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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2504#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1554 fasta sequence
[GTTTGATGGCCGCAGGAAGAAGCGACTGAGACTCTGGCGTGAAGGAAGAAAAAGGAGGGACGACGACGGTGGGAACGACGAGAAAGGATTTTTGTTTTGCGCCGAGTTGGAATTTGCGCGGAAAGGAGAGAAGGCCAGCAGTCAGTGGGGCTTTTTTTTAGGGGTGAACACCGCCTTTGTGTCAGTGCCTCTGTGCCGGTGCGTCTCTCCCTTGGTGGGTCAAAAAAAAACTGGGTTCGGGGAGTGCCGCTCCTCGGTAGTGAAGTGCTAAATCTGAGCGCCTGGGCGGAGAGAGGAGACAAGATTTTGCTGTTTCCAGTCAATGTGATACAAACAGCGGAAACCCTCGATTGAAGCGGAACAGAAGAGTCTAGGCAGCGGAGCGAAGCACACCATTAGAGAGGAAAATGAGTGAACTGGATCAGCTACGCCAGGAGGCTGAGCAGCTCAAGAACCAGATCAGAGATGCTAGAAAAGCGTGTGCGGATGCTACCCTGTCTCAGATTACAGCCAACATCGACCCTGGTGGCCGAATTCAGATGCGCACTAGACGGACACTGAGGGGGCATCTGGCTAAAATCTACGCCATGCACTGGGGTACTGACTCAAGGCTTTTGGTCAGTGCTTCCCAGGATGGCAAACCCATTATTTGGGACAGCTATACCACAAACAAGGTTCACGCTACCCCACTACGCTCCTCCTGGGTGATGACGTGCGCCTATGCTCCGTCTGGAAACTATGTTGCTTGTGGAGGCCTGGACAACATCTGCTCTATCTACAACCTGAAAACCCGTGAGGGAAATGTGCGTGTCAGCCGTGAGCTGGCTGGGCACACAGGCTACCTGTCCTGCTGTCGTTTCCTGGATGATAACCAGATCGTCACTAGCTCTGGAGACACCACCTGTGCTCTGTGGGACATCGAGACTGGTCAGCAGACGACCACATTTGCTGGTCACACAGGCGATGTGATGAGCCTGTCTCTGGCACCTGACACCAGGATGTTTGTCTCTGGAGCCTGCGATGCTTCTGCCAAGCTCTGGGACATCAGAGAAGGAATGTGCCGACAAACCTTCACTGGCCACGAGTCAGACATCAATGCTATCTGTTTCTTCCCCAATGGCAACGCTTTTGCCACAGGCTCAGATGATGCTACGTGCCGGCTGTTTGACCTGCGTGCAGACCAGGAGCTGATGGTTTACTCACACGACAACATCATCTGTGGCATCACCTCTGTGGCGTTCTCCAAGAGTGGCCGCCTACTGCTGGCTGGCTATGATGATTTCAACTGCAACGTGTGGGACACTTTGAAGGCTGACCGTGCTGGAGTCCTCGCGGGTCACGACAACAGAGTGAGCTGCTTGGGTGTGACCGACGATGGCATGGCAGTGGCAACAGGGTCCTGGGACAGCTTCCTCAAGATCTGGAACTAGAGTCTGAAGATGGCATCTGGACTCCAAAGTTGAGTGGAAGACCATTCCAACGTCACAATGTTCAATTTTATTGCATATCCAATCTTTTCACCATGATACTGAGTCCACCCCCACCCCCCCACCC]
[+] EMBL CA590853 [GTTTGATGGCCGCAGGAAGAAGCGACTGAGACTCTGGCGTGAAGGAAGAAAAAGGAGGGACGACGACGGTGGGAACGACGAGAAAGGATTTTTGTTTTGCGCCGAGTTGGAATTTGCGCGGAAAGGAGAGAAGGCCAGCAGTCAGTGGGGCTTTTTTTTAGGGGTGAACACCGCCTTTGTGTCAGTGCCTCTGTGCCGGTGCGTCTCTCCCTTGGTGGGTCAAAAAAAAACTGGGTTCGGGGAGTGCCGCTCCTCGGTAGTGAAGTGCTAAATCTGAGCGCCTGGGCGGAGAGAGGAGACAAGATTTTGCTGTTTCCAGTCAATGTGATACAAACAGCGGAAACCCTCGATTGAAGCGGAACAGAAGAGTCTAGGCAGCGGAGCGAAGCACACCATTAGAGAGGAAAATGAGTGAACTGGATCAGCTACGCCAGGAGGCTG ]
[+] EMBL CA590440 [ GACTCTGGCGTGAAGGAAGAAAAAGGAGGGACGACGACGGTGGGAACGACGAGAAAGGATTTTTGTTTTGCGCCGAGTTGGAATTTGCGCGGAAAGGAGAGAAGGCCAGCAGTCAGTGGGGCTTTTTTTTAGGGGTGAACACCGCCTTTGTGTCAGTGCCTCTGTGCCGGTGCGTCTCTCCCTTGGTGGGTC AAAAAAAACTGGGTTCGGGGAGTGCCGCTCCTCGGTAGTGAAGTGCTAAATCTGAGCGCCTGGGCGGAGAGAGGAGACAAGATTTTGCTGTTTCCAGTCAATGTGATACAAACAGCGGAAACCCTCGATTGAAGCG GAAGAGTCTAGGCAGCGGAGCGAAGCACACCATTAGAGAGGAAAATGAGTGAACTGGATCAGCTACGCCAGGAGGCTGAGCAGCTCAAGAACCAGATCAGAGATGCTAGAAAAGCGTGTGCGGATGCTACCCTGTCTCAGATTACAGCCAACATCGACCCTGGTGGCCGAATTCAGATGCGCACTAGACGGACACTGAGG ]
[+] EMBL CA846310 [ TCTGTCGAGAAGGAAGAAAAAGGAGGGACGACGACGGTGGGAACGTCGAGAAAGGATTTTTGTTTTGCGCCGAGTTGGAATTTGCGCGGAAAGGAGAGAAGGCCAGCAGTCAGTGGGGC TTTTTTTAGGGGTGAACACCGCCTTTGTGTCAGTGCCTCTGTGCCGGTGCGTCTCTCCCTTGGTGGGTCAAAAAAAAACTGGGTTCGGGGAGTGCCGCTCCTCGGTAGTGAAGTGCTAAATCTGAGCGCCTGGGCGGAGAGAGGAGACAAGATTTTGCTGTTTCCAGTCAATGTGATACAAACAGCGGAAACCCTCGATTGAAGCGGAACAGAAGAGTCTAGGCAGCGGAGCGAAGCACACCATTAGAGAGGAAAATGAGTGAACTGGATCAGCTACGCCAGGAGGCTGAGCAGCTCAAGAACCAGATCAGAGATGCTAGAAAAGCGTGTGCGGATGCTACCCTGTCTCAGATTACAGCCAACATCGACCCTGTTGGCCGAATTCAGATGCGCACTAGACGGACACTGAGGGGGCATCTGGCTAAAATCTACGCCATGCACTGGGGTACTGACTCAAGGCTTTTGGTCAGTGCTTCCCAGGATGGCAAACCCATTATTTGGGACAGCTATACCACAAACAAGGTTCACGCTACCCCACTACGCTCCTCCTGGGTGATGACGTGCGCCTATGCTCCGTCTGGAAACTATGTTGCTTGTGGAGGCCTGGACAACATCTGCTCTATCTACAACCTGAAAACCCGTGAGGGAAATGTGCGTGTCAGCCGTGAGCTGGCTGGGCACACAGGCTACC ]
[+] EMBL FR0059999 [ TGATACAAACAGCGGAAACCCTCGATTGAAGCGGAACAGAAGAGTCTAGGCAGCGGCGCGACACCCACCATTAGAGAGGAAAATGAGT ]
[+] EMBL BU805812 [ GCGCCTATGCTCCGTCTGGAAACTATGTTGCTTGTGGAGGCCTGGACAACATCTGCTCTATCTACAACCTGAAAACCCGTGAGGGAAATGTGCGTGTCAGCCGTGAGCTGGCTGGGCACACAGGCTACCTGTCCTGCTGTCGTTTCCTGGATGATAACCAGATCGTCACTAGCTCTGGAGACACCACCTGTGCTCTGTGGGACATCGAGACTGGTCAGCAGACGACCACATTTGCTGGTCACACAGGCGATGTGATGAGCCTGTCTCTGGCACCTGACACCAGGATGTTTGTCTCTGGAGCCTGCGATGCTTCTGCCAAGCTCTGGGACATCAGAGAAGGAATGTGCCGACAAACCTTCACTGGCCACGAGTCAGACATCAATGCTATCTGTTTCTTCCCCAATGGCAACGCTTTTGCCACAGGCTCAGATGATGCTACGTGCCGGCTG ]
[-] EMBL CA331077 [ GGAATGTGCCGACAAACCTTCACTGGCCACGAGTCAGACATCAATGCTATCTGTTTCTTCCCCAATGGCAACGCTTTTGCCACAGGCTCAGATGATGCTACGTGCCGGCTGTTTGACCTGCGTGCAGACCAGGAGCTGATGGTTTACTCACACGACAACATCATCTGTGGCATCACCTCTGTGGCGTTCTCCAAGAGTGGCCGCCTACTGCTGGCTGGCTATGATGATTTCAACTGCAACGTGTGGGACACTTTGAAGGCTGACCGTGCTGGAGTCCTCGCGGGTCACGACAACAGAGTGAGCTGCTTGGGTGTGACCGACGATGGCATGGCAGTGGCAACAGGGTCCTGGGACAGCTTCCTCAAGATCTGGAACTAGAGTCTGAAGATGGCATCTGGACTCCAAAGTTGAGTGGAAGACCATTCCAACGTCACAATGTTCAATTTTATTGCATATCCAATCTTTTCACCATGATACTGAGTCCACCCCCACCCCCCCACCC]
consensusID : consensus_2504#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence
[GTTTGATGGCCGCAGGAAGAAGCGACTGAGACTCTGGCGTGAAGGAAGAAAAAGGAGGGACGACGACGGTGGGAACGACGAGAAAGGATTTTTGTTTTGCGCCGAGTTGGAATTTGCGCGGAAAGGAGAGAAGGCCAGCAGTCAGTGGGGCTTTTTTTAGGGGTGAACACCGCCTTTGTGTCAGTGCCTCTGTGCCGAAGAGTCTAGGCAGCGGAGCGAAGCACACCATTAGAGAGGAAAATGAGTGAACTGGATCAGCTACGCCAGGAGGCTGAGCAGCTCAAGAACCAGATCAGAGATGCTAGAAAAGCGTGTGCGGATGCTACCCTGTCTCAGATTACAGCCAACATCGACCCTGTTGGCCGAATTCAGATGCGCACTAGACGGACACTGAGGGGGCATCTGGCTAAAATCTACGCCATGCACTGGGGTACTGACTCAAGGCTTTTG]
[+] EMBL BU806654 [GTTTGATGGCCGCAGGAAGAAGCGACTGAGACTCTGGCGTGAAGGAAGAAAAAGGAGGGACGACGACGGTGGGAACGACGAGAAAGGATTTTTGTTTTGCGCCGAGTTGGAATTTGCGCGGAAAGGAGAGAAGGCCAGCAGTCAGTGGGGCTTTTTTTAGGGGTGAACACCGCCTTTGTGTCAGTGCCTCTGTGCCGAAGAGTCTAGGCAGCGGAGCGAAGCACACCATTAGAGAGGAAAATGAGTGAACTGGATCAGCTACGCCAGGAGGCTGAGCAGCTCAAGAACCAGATCAGAGATGCTAGAAAAGCGTGTGCGGATGCTACCCTGTCTCAGATTACAGCCAACATCGACCCTGTTGGCCGAATTCAGATGCGCACTAGACGGACACTGAGGGGGCATCTGGCTAAAATCTACGCCATGCACTGGGGTACTGACTCAAGGCTTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2504#0 GTTTGATGGCCGCAGGAAGAAGCGACTGAGACTCTGGCGTGAAGGAAGAAAAAGGAGGGA 60
consensus_2504#1 GTTTGATGGCCGCAGGAAGAAGCGACTGAGACTCTGGCGTGAAGGAAGAAAAAGGAGGGA 60
************************************************************
consensus_2504#0 CGACGACGGTGGGAACGACGAGAAAGGATTTTTGTTTTGCGCCGAGTTGGAATTTGCGCG 120
consensus_2504#1 CGACGACGGTGGGAACGACGAGAAAGGATTTTTGTTTTGCGCCGAGTTGGAATTTGCGCG 120
************************************************************
consensus_2504#0 GAAAGGAGAGAAGGCCAGCAGTCAGTGGGGCTTTTTTTTAGGGGTGAACACCGCCTTTGT 180
consensus_2504#1 GAAAGGAGAGAAGGCCAGCAGTCAGTGGGGCTTTTTTT-AGGGGTGAACACCGCCTTTGT 179
************************************** *********************
consensus_2504#0 GTCAGTGCCTCTGTGCCGGTGCGTCTCTCCCTTGGTGGGTCAAAAAAAAACTGGGTTCGG 240
consensus_2504#1 GTCAGTGCCTCTGTGCCG------------------------------------------ 197
******************
consensus_2504#0 GGAGTGCCGCTCCTCGGTAGTGAAGTGCTAAATCTGAGCGCCTGGGCGGAGAGAGGAGAC 300
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 AAGATTTTGCTGTTTCCAGTCAATGTGATACAAACAGCGGAAACCCTCGATTGAAGCGGA 360
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 ACAGAAGAGTCTAGGCAGCGGAGCGAAGCACACCATTAGAGAGGAAAATGAGTGAACTGG 420
consensus_2504#1 ----AAGAGTCTAGGCAGCGGAGCGAAGCACACCATTAGAGAGGAAAATGAGTGAACTGG 253
********************************************************
consensus_2504#0 ATCAGCTACGCCAGGAGGCTGAGCAGCTCAAGAACCAGATCAGAGATGCTAGAAAAGCGT 480
consensus_2504#1 ATCAGCTACGCCAGGAGGCTGAGCAGCTCAAGAACCAGATCAGAGATGCTAGAAAAGCGT 313
************************************************************
consensus_2504#0 GTGCGGATGCTACCCTGTCTCAGATTACAGCCAACATCGACCCTGGTGGCCGAATTCAGA 540
consensus_2504#1 GTGCGGATGCTACCCTGTCTCAGATTACAGCCAACATCGACCCTGTTGGCCGAATTCAGA 373
********************************************* **************
consensus_2504#0 TGCGCACTAGACGGACACTGAGGGGGCATCTGGCTAAAATCTACGCCATGCACTGGGGTA 600
consensus_2504#1 TGCGCACTAGACGGACACTGAGGGGGCATCTGGCTAAAATCTACGCCATGCACTGGGGTA 433
************************************************************
consensus_2504#0 CTGACTCAAGGCTTTTGGTCAGTGCTTCCCAGGATGGCAAACCCATTATTTGGGACAGCT 660
consensus_2504#1 CTGACTCAAGGCTTTTG------------------------------------------- 450
*****************
consensus_2504#0 ATACCACAAACAAGGTTCACGCTACCCCACTACGCTCCTCCTGGGTGATGACGTGCGCCT 720
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 ATGCTCCGTCTGGAAACTATGTTGCTTGTGGAGGCCTGGACAACATCTGCTCTATCTACA 780
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 ACCTGAAAACCCGTGAGGGAAATGTGCGTGTCAGCCGTGAGCTGGCTGGGCACACAGGCT 840
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 ACCTGTCCTGCTGTCGTTTCCTGGATGATAACCAGATCGTCACTAGCTCTGGAGACACCA 900
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 CCTGTGCTCTGTGGGACATCGAGACTGGTCAGCAGACGACCACATTTGCTGGTCACACAG 960
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 GCGATGTGATGAGCCTGTCTCTGGCACCTGACACCAGGATGTTTGTCTCTGGAGCCTGCG 1020
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 ATGCTTCTGCCAAGCTCTGGGACATCAGAGAAGGAATGTGCCGACAAACCTTCACTGGCC 1080
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 ACGAGTCAGACATCAATGCTATCTGTTTCTTCCCCAATGGCAACGCTTTTGCCACAGGCT 1140
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 CAGATGATGCTACGTGCCGGCTGTTTGACCTGCGTGCAGACCAGGAGCTGATGGTTTACT 1200
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 CACACGACAACATCATCTGTGGCATCACCTCTGTGGCGTTCTCCAAGAGTGGCCGCCTAC 1260
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 TGCTGGCTGGCTATGATGATTTCAACTGCAACGTGTGGGACACTTTGAAGGCTGACCGTG 1320
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 CTGGAGTCCTCGCGGGTCACGACAACAGAGTGAGCTGCTTGGGTGTGACCGACGATGGCA 1380
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 TGGCAGTGGCAACAGGGTCCTGGGACAGCTTCCTCAAGATCTGGAACTAGAGTCTGAAGA 1440
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 TGGCATCTGGACTCCAAAGTTGAGTGGAAGACCATTCCAACGTCACAATGTTCAATTTTA 1500
consensus_2504#1 ------------------------------------------------------------
consensus_2504#0 TTGCATATCCAATCTTTTCACCATGATACTGAGTCCACCCCCACCCCCCCACCC 1554
consensus_2504#1 ------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |