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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 879 fasta sequence
[AGGCGGCTCTGGCTGCGCTCCGCGCTCTTTAACTTCTTGGGCAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCAGGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGTTGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCATTCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGGCTCAGGTGGACAGCCTCGCGCTTGATAGACAGGTCAAGGACATGATGACCAAACGGGTGGAGTTTTTGGATGAGGTCCCCAAAATGCCGGACTTTATCATAGCCCTGCGGCCCCACACTGTGTGGGAGAAGACCCCCATCAAACTGTTCTGCACTGTGCAGGGAAACCCAAGACCCATTGTTAAATGGTATAAAGAAGGAGTGCCCGTCGACCCCCTGAGCACTCCAGGAAAGTACAAGATTGAGAGCAAATATGGAGTTCACAGTTTGGTCATCAGCAGGTGTGCTGTGAGCGACACAGCGGAGTACAGCGCCGTGGCCACCAACTCACACGGGATGGCTACCAGCAAGGCTACAGTCATCGTGAAGAGAGCATCAGGAGCCGGAGCGTCCTGCCATCTTGGATTAGTGCCCCGCATGACCGAGATCCACCCCAGCAAGCTGGAGGTAACCCTAATCGATCACTTCCCAGTGAGCTTTGGCGATGAGGGCGACTCCATCAGGCTGGTTTGTAGCATGGTGGGTGTCCCCAACCTGCCCAACCTGGCCCCTTGGCCCAGTGGTACAGAGATGATAAGCTGCTGAAACCCAATAAGTTTGTAGAGATGTCGGTGGGTGGAGAAGCAGCCCGGGTTACACTGCC]
[+] EMBL BU805651 [AGGCGGCTCTGGCTGCGCTCCGCGCTCTTTAACTTCTTGGGCAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCAGGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGTTGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCATTCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGGCTCAGGTGGACAGCCTCGCGCTTGATAGACAGGTCAAGGACATGATGACCAAACGGGTGGAGTTTTTGGATGAGGTCCCCAAAATGCCGGACTTTATCATAGCCCTGCGGCCCCACACTGTGTGGGAGAAGACCCCCATCAAACTGTTCTGCACTGTGCAGGGAAACCCAAGACCCATTGTTAAATGGTATAAAGAAGGAGTGCCCGTCGACCCCCTGAGCACTCCAGGAAAGTACAAGATTGAGAGCAAATATGGAGTTCACAGTTTGGTCATCAGCAGGTGTGCTGTGAGCGACACAGCGGAGTACAGCGCCGTGGCCACCAACTCACACGGGATGGCTACCAGCAAGGCTACAGTCATCGTGAA ]
[+] EMBL FR0063478 [ CGGAGTACAGCGCCGTGGCCACCAACTCACACGGGATGGCTACCAGCAAGGCTACAGTCATCGTGAAGAGAGCATCAGGAGCCGGAGCGTCCTGCCATCTTGGATTAGTGCCCCGCATGACCGAGATCCACCCCAGCAAGCTGGAGGTAACCCTAATCGATCACTTCCCAGTGAGCTTTGGCGTTGAGGGCGACTCCATCAGTCTGGTTTGTAGCATGGTGGTTGTCCCCAACCTGCCCAACCTGCCCCCTTGGCCCAGTGGTACAGAGATGATAAGCTGCTGAAACCCAATAAGTTTGT ]
[+] EMBL FR0063479 [ GAGTACAGCGCCGTGGCCACCAACTGACACGGTATGGCTACCAGCAAGGCTACAGTCATCGTGAAGAGAGCATCAGGAGCCGGAGCGTCCTGCCATCTTGGATTAGTGCCCCGCATGACCGAGATCCACCCCAGCAAGCTGGAGGTAACCCTAATCGATCACTTCCCAGTGAGCTTTGGCGATGAGGGCGACTCCATCAGGCTGGTTTGTAGCATGCTGGGTGTCCCCAACCTGCCCAACCTGGCCCCTTGGCCCAGTGGTACAGAGATGATAAGCTGCTGAAACCCAATAAGTTTGTAGAGATGTCGGTGGGTGGAGAAGCAGCCCGGGTTACACTGCC]
consensusID : consensus_2513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 597 fasta sequence
[GTGTTGAGCCAAGGAGGACAGGTCGTCTTCAGGAGCCTAAAAAGGTCTCACACAGTTTACAGCATCGGGATTTGCCAACAGATTAAACTCAAAAAGACTTTCCAGCTCCTGTTCTGAGGGAATATTTGAGGAATCTGAAGGTGTCTTTCAAGCAACTCCAGTCATGGCTTCAGTCAAGAAGTGTGTGTGTCAAGTCAAAAGCGATTATGCATTTCAGCACAATAAATATGTAATGAAGCAGCAACAGCAGCACACTCAAAGGAAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCAGGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGTTGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCATTCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGGCTCAGGTGGACAGCCTCGCGCTTGATAGACAGGTCAAGGACATGATGACCAAACGGGTGGAGTTTTTGGATGAGGGCCCCAAAATGCCGGACTTTATCATAGCCCTGCGGCCCCACACTGGGTGGGAGAAGACCCCCAT]
[+] EMBL BU804744 [GTGTTGAGCCAAGGAGGACAGGTCGTCTTCAGGAGCCTAAAAAGGTCTCACACAGTTTACAGCATCGGGATTTGCCAACAGATTAAACTCAAAAAGACTTTCCAGCTCCTGTTCTGAGGGAATATTTGAGGAATCTGAAGGTGTCTTTCAAGCAACTCCAGTCATGGCTTCAGTCAAGAAGTGTGTGTGTCAAGTCAAAAGCGATTATGCATTTCAGCACAATAAATATGTAATGAAGCAGCAACAGCAGCACACTCAAAGGAAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCAGGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGTTGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCATTCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGG ]
[+] EMBL FR0063538 [ CCTGTTCTGAGGGAATATTTGAGGAATCTGAAGGTGTCTTTCAAGCAACTCCAGTCATGGCTGGAGTCAAGAAGTGTGTGTGTCAAGTCAAAAGCGATTATGCATTTCAGCACAATAAATATGTAATGAAGCAGCAACAGCAGCACACTCAAAGGAAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCAGGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGTTGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCATTCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGGCTCAGGTGGACAGCCTCGCGCTTGATAGACAGGTCAAGGACATGATGACCAAACGGGTGGAGTTTTTGGATGAGGGCCCCAAAATGCCGGACTTTATCATAGCCCTGCGGCCCCACACTGGGTGGGAGAAGACCCCCAT]
[+] EMBL FR0063166 [ aGCAGGTGTCTTTCAAGCAACTCCAGTCATGGCTTCAGTCAAGAAGTGTGTGTGTCAAGTCAAAAGCGATTATGCATTTCAGCACAATAAATATGTAATGAAGCAGCAACAGCAGCACACTCAAAGGAAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCAGGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGTTGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCATTCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGGCTCAGGTGGACAGCCTCGCGCTTGATAGACAGGTCAAGGACATGATGACCAAACGGGTGGAGTTTT ]
consensusID : consensus_2513#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[TAACTTCTTGGGTGTCTTTCAAGCAACTCCAGTCATGGCTTCAGTCAAGAAGTGTGTGTGTCAAGTCAAAAGCGATTATGCATTTCAGCACAATAAATATGTAATGAAGCAGCAACAGCAGCACACTCAAAGGAAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCAGGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGTTGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCATTCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGGCTCAGGTGGACAGCCTCGCGCTTGATAGACAGGTCAAGGACATGATGACCAAACGGGTGGAGTTTTTGGATGAGGTCCCCAAAATGCCGGACTTTATCATAGCCC]
[+] EMBL BU805279 [TAACTTCTTGGGTGTCTTTCAAGCAACTCCAGTCATGGCTTCAGTCAAGAAGTGTGTGTGTCAAGTCAAAAGCGATTATGCATTTCAGCACAATAAATATGTAATGAAGCAGCAACAGCAGCACACTCAAAGGAAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCAGGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGTTGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCATTCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGGCTCAGGTGGACAGCCTCGCGCTTGATAGACAGGTCAAGGACATGATGACCAAACGGGTGGAGTTTTTGGATGAGGTCCCCAAAATGCCGGACTTTATCATAGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2513#1 GTGTTGAGCCAAGGAGGACAGGTCGTCTTCAGGAGCCTAAAAAGGTCTCACACAGTTTAC 60
consensus_2513#2 ------------------------------------------------------------
consensus_2513#0 ------------------------------------------------------------
consensus_2513#1 AGCATCGGGATTTGCCAACAGATTAAACTCAAAAAGACTTTCCAGCTCCTGTTCTGAGGG 120
consensus_2513#2 ------------------------------------------------------------
consensus_2513#0 ------------------------------------------------------------
consensus_2513#1 AATATTTGAGGAATCTGAAGGTGTCTTTCAAGCAACTCCAGTCATGGCTTCAGTCAAGAA 180
consensus_2513#2 ---------TAACTTCTTGGGTGTCTTTCAAGCAACTCCAGTCATGGCTTCAGTCAAGAA 51
consensus_2513#0 ------------------------------------------------------------
consensus_2513#1 GTGTGTGTGTCAAGTCAAAAGCGATTATGCATTTCAGCACAATAAATATGTAATGAAGCA 240
consensus_2513#2 GTGTGTGTGTCAAGTCAAAAGCGATTATGCATTTCAGCACAATAAATATGTAATGAAGCA 111
consensus_2513#0 -----------------------------------------AGGCGGCTCTGGCTGCGCT 19
* * * **
consensus_2513#1 GCAACAGCAGCACACTCAAAGGAAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCA 300
consensus_2513#2 GCAACAGCAGCACACTCAAAGGAAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCA 171
consensus_2513#0 CCGCGCTCTTTAACTTCTTGGGCAATCAAGCTTTAAATCTCTGAGCCAGGTCCGGGCCCA 79
* * * ** ** *************************************
consensus_2513#1 GGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGT 360
consensus_2513#2 GGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGT 231
consensus_2513#0 GGCCACAGAGGCAATGGCAGAGCAAGAGTACACCATTCCGGTGTTCCGGGAGAGGAGCGT 139
************************************************************
consensus_2513#1 TGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCAT 420
consensus_2513#2 TGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCAT 291
consensus_2513#0 TGAGGAGAGGGAGGAGTACCAGCGGGTGTCTTCAAATGTGGAGAAAGGACTCAGTGTCAT 199
************************************************************
consensus_2513#1 TCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGGCTCAGGTGGACAGCCTCGCGCT 480
consensus_2513#2 TCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGGCTCAGGTGGACAGCCTCGCGCT 351
consensus_2513#0 TCAGGAGGAGCTCCACAGGATGCGGATGGCCACCAAGGCTCAGGTGGACAGCCTCGCGCT 259
************************************************************
consensus_2513#1 TGATAGACAGGTCAAGGACATGATGACCAAACGGGTGGAGTTTTTGGATGAGGGCCCCAA 540
consensus_2513#2 TGATAGACAGGTCAAGGACATGATGACCAAACGGGTGGAGTTTTTGGATGAGGTCCCCAA 411
consensus_2513#0 TGATAGACAGGTCAAGGACATGATGACCAAACGGGTGGAGTTTTTGGATGAGGTCCCCAA 319
***************************************************** ******
consensus_2513#1 AATGCCGGACTTTATCATAGCCCTGCGGCCCCACACTGGGTGGGAGAAGACCCCCAT--- 597
consensus_2513#2 AATGCCGGACTTTATCATAGCCC------------------------------------- 434
consensus_2513#0 AATGCCGGACTTTATCATAGCCCTGCGGCCCCACACTGTGTGGGAGAAGACCCCCATCAA 379
***********************
consensus_2513#1 ------------------------------------------------------------
consensus_2513#2 ------------------------------------------------------------
consensus_2513#0 ACTGTTCTGCACTGTGCAGGGAAACCCAAGACCCATTGTTAAATGGTATAAAGAAGGAGT 439
consensus_2513#1 ------------------------------------------------------------
consensus_2513#2 ------------------------------------------------------------
consensus_2513#0 GCCCGTCGACCCCCTGAGCACTCCAGGAAAGTACAAGATTGAGAGCAAATATGGAGTTCA 499
consensus_2513#1 ------------------------------------------------------------
consensus_2513#2 ------------------------------------------------------------
consensus_2513#0 CAGTTTGGTCATCAGCAGGTGTGCTGTGAGCGACACAGCGGAGTACAGCGCCGTGGCCAC 559
consensus_2513#1 ------------------------------------------------------------
consensus_2513#2 ------------------------------------------------------------
consensus_2513#0 CAACTCACACGGGATGGCTACCAGCAAGGCTACAGTCATCGTGAAGAGAGCATCAGGAGC 619
consensus_2513#1 ------------------------------------------------------------
consensus_2513#2 ------------------------------------------------------------
consensus_2513#0 CGGAGCGTCCTGCCATCTTGGATTAGTGCCCCGCATGACCGAGATCCACCCCAGCAAGCT 679
consensus_2513#1 ------------------------------------------------------------
consensus_2513#2 ------------------------------------------------------------
consensus_2513#0 GGAGGTAACCCTAATCGATCACTTCCCAGTGAGCTTTGGCGATGAGGGCGACTCCATCAG 739
consensus_2513#1 ------------------------------------------------------------
consensus_2513#2 ------------------------------------------------------------
consensus_2513#0 GCTGGTTTGTAGCATGGTGGGTGTCCCCAACCTGCCCAACCTGGCCCCTTGGCCCAGTGG 799
consensus_2513#1 ------------------------------------------------------------
consensus_2513#2 ------------------------------------------------------------
consensus_2513#0 TACAGAGATGATAAGCTGCTGAAACCCAATAAGTTTGTAGAGATGTCGGTGGGTGGAGAA 859
consensus_2513#1 --------------------
consensus_2513#2 --------------------
consensus_2513#0 GCAGCCCGGGTTACACTGCC 879
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |