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Takifugu rubripes
cluster # 2516 cluster # 2516       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2516#0 length = 640 sequences # 5  
consensus_2516#1 length = 345 sequences # 2  

consensusID : consensus_2516#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 640
fasta sequence
                              [TTTTGCTTCGTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCTCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGTTCTCCACCATTGAATATGTGGTTCAGCGTGGCCCTCAGATGCCA]

[+] EMBL CA590386             [TTTTGCTTCGTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGNACTACAGGGNCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCCTCCATCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGNTCTCC                                       ]
[+] EMBL CA333272             [         GTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCTCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGTTCTCCACCATTGAATATGTGGTTCAGCGTGGCCCTCAGATGCCA]
[+] EMBL CA846060             [         ccTTTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATCTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTG                                                                                                                                                                   ]
[+] EMBL CA590459             [                CTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTCTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCTCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGCCTCAGTTCTCCACCATTGAATATGTGGTTCAGCGTGGTCCTCAG      ]
[+] EMBL FR0063319            [                       GGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCAGGCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGGTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGGACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGGCCGCGAGCCGACTGGAGGCGACCCCGATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGGCCTGCCTC                                                                                                                                                                                                                                   ]


>consensus_2516#0 TTTTGCTTCGTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCC ACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACT TATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCA AGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCAT TAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGA CGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGT GGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCA GTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCA AGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCC TCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGTTCTC CACCATTGAATATGTGGTTCAGCGTGGCCCTCAGATGCCA



consensusID : consensus_2516#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 345
fasta sequence
                              [GCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGGGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGGGGTCCCAGGGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCC]

[+] EMBL FR0060343            [GCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCC]
[+] EMBL FR0060194            [                                                           AAACCTCACCCGGACCCACTTATTTACCCGGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGGGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGGGGTCCCAGGGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCT       ]


>consensus_2516#1 GCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAA AACCTCACCCGGACCCACTTATTTACCCGGTGGCGCCAGACGGCCAAGCCTGAGCTCACT GACGTCACAGCTATCCCATCTTTTTCCAAGGGCGTTCCATCCCCATTAACCCCAAAATCG TCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCA GTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGGGGTCCCAGGGGCAT CCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2516#0      TTTTGCTTCGTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCC 60
consensus_2516#1      -----------------------------------------GCGACGGTGATTTACCTCC 19
                                                               *******************

consensus_2516#0      ACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACT 120
consensus_2516#1      ACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACT 79
                      ************************************************************

consensus_2516#0      TATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCA 180
consensus_2516#1      TATTTACCCGGTG---------------------------------GCGCCAGACGGCCA 106
                      *************                                 **************

consensus_2516#0      AGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCAT 240
consensus_2516#1      AGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGGGCGTTCCATCCCCAT 166
                      ******************************************** ***************

consensus_2516#0      TAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGA 300
consensus_2516#1      TAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGA 226
                      ************************************************************

consensus_2516#0      CGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGT 360
consensus_2516#1      CGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGG 286
                      *********************************************************** 

consensus_2516#0      GGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCA 420
consensus_2516#1      GGTCCCAGGGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCC- 345
                      ******** ************************************************** 

consensus_2516#0      GTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCA 480
consensus_2516#1      ------------------------------------------------------------
                                                                                  

consensus_2516#0      AGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCC 540
consensus_2516#1      ------------------------------------------------------------
                                                                                  

consensus_2516#0      TCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGTTCTC 600
consensus_2516#1      ------------------------------------------------------------
                                                                                  

consensus_2516#0      CACCATTGAATATGTGGTTCAGCGTGGCCCTCAGATGCCA 640
consensus_2516#1      ----------------------------------------
                                                              




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)