These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 640 fasta sequence [TTTTGCTTCGTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCTCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGTTCTCCACCATTGAATATGTGGTTCAGCGTGGCCCTCAGATGCCA] [+] EMBL CA590386 [TTTTGCTTCGTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGNACTACAGGGNCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCCTCCATCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGNTCTCC ] [+] EMBL CA333272 [ GTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCTCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGTTCTCCACCATTGAATATGTGGTTCAGCGTGGCCCTCAGATGCCA] [+] EMBL CA846060 [ ccTTTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATCTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTG ] [+] EMBL CA590459 [ CTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTCTGAAGGAGCGACCTGACCTGCCTCCTATCCAGTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCAAGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCCTCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGCCTCAGTTCTCCACCATTGAATATGTGGTTCAGCGTGGTCCTCAG ] [+] EMBL FR0063319 [ GGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCAGGCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGGTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGGACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGGCCGCGAGCCGACTGGAGGCGACCCCGATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGGCCTGCCTC ] consensusID : consensus_2516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 345 fasta sequence [GCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGGGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGGGGTCCCAGGGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCC] [+] EMBL FR0060343 [GCGACGGTGATTTACCTCCACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACTTATTTACCCGGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGTGGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCC] [+] EMBL FR0060194 [ AAACCTCACCCGGACCCACTTATTTACCCGGTGGCGCCAGACGGCCAAGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGGGCGTTCCATCCCCATTAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGACGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGGGGTCCCAGGGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2516#0 TTTTGCTTCGTTGTCACTGGAGTGGACGCGGCAGGAGCGGAGCGACGGTGATTTACCTCC 60 consensus_2516#1 -----------------------------------------GCGACGGTGATTTACCTCC 19 ******************* consensus_2516#0 ACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACT 120 consensus_2516#1 ACCTCCTCACGCAGAGACCCACCCGGGCTACTAACACCGAAAACCTCACCCGGACCCACT 79 ************************************************************ consensus_2516#0 TATTTACCCGGTGTGTCCTGCATAAACTGCTCGCTTGTGTAACGTGGCGCCAGACGGCCA 180 consensus_2516#1 TATTTACCCGGTG---------------------------------GCGCCAGACGGCCA 106 ************* ************** consensus_2516#0 AGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGTGCGTTCCATCCCCAT 240 consensus_2516#1 AGCCTGAGCTCACTGACGTCACAGCTATCCCATCTTTTTCCAAGGGCGTTCCATCCCCAT 166 ******************************************** *************** consensus_2516#0 TAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGA 300 consensus_2516#1 TAACCCCAAAATCGTCATGGCAACCTTCCCAGAGTACATCGCTCAGAACGAGGAGCGCGA 226 ************************************************************ consensus_2516#0 CGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGT 360 consensus_2516#1 CGGCGTGCGGTTCAGTTGGAACGTGTGGCCGTCGAGCCGACTGGAGGCGACCCGCATGGG 286 *********************************************************** consensus_2516#0 GGTCCCAGTGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCCA 420 consensus_2516#1 GGTCCCAGGGGCATCCCTGATCACCCCTTTGAAGGAGCGACCTGACCTGCCTCCTATCC- 345 ******** ************************************************** consensus_2516#0 GTATGAACCAGTTCTGTGCAGCCGCGCAACCTGCCGTGCTGTGCTCAATCCTCTGTGTCA 480 consensus_2516#1 ------------------------------------------------------------ consensus_2516#0 AGTGGACTACAGAGCCAAGCTGTGGGCCTGTAATTTCTGCTACCAGAGAAACCAGTTTCC 540 consensus_2516#1 ------------------------------------------------------------ consensus_2516#0 TCCATCCTATGCTGGGATCTCTGAAGTGAATCAGCCCGCTGAGCTGCTGGCTCAGTTCTC 600 consensus_2516#1 ------------------------------------------------------------ consensus_2516#0 CACCATTGAATATGTGGTTCAGCGTGGCCCTCAGATGCCA 640 consensus_2516#1 ---------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |