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Takifugu rubripes
cluster # 2517 cluster # 2517       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2517#0 length = 670 sequences # 5  
consensus_2517#1 length = 584 sequences # 1  
consensus_2517#2 length = 293 sequences # 1  

consensusID : consensus_2517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 670
fasta sequence
                              [CGCACCGAGAAGCTTCCAGGACGAAATTGGGACTTTCTGCACCGGCTGACTCACACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGGCGGGCCAGCTGTTCCCAACCCATCGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTT-ATTTCTCGTGGCGTTGAGG-ACATGTCCCACCAGAGACCAACGTGTCACAACCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTCCACTCCTGGACACTCACCATCATAACGCCCGCTGAG]

[+] EMBL CA590474             [CGCACCGAGAAGCTTCCAGGACGAAATTGGGACTTTCTGCACCGGCTGACTCACACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGGACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGGCGGGCCAGCTGTTCCCCACCCATCGGCAAACCAAGGTGAAGAGCCCAGTGGCTATCTGAACATAGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTTAATTTCTCGGGGGGTTGAGGAAAATGTCCCCCCGAAGACCAAAGTGGCACAACCCGCAa                                                                     ]
[+] EMBL BU805128             [                        AATTGGGACTTTCTGCACCGGCTGACTCACACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCTAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGCTGGGCCAGCTGTTCCCAACCCATCGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTT ATATCTCGTGGCGTTGAGG ACATGTCCCACCAGAGACCAACGTGTCACAATCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTC                                    ]
[+] EMBL CA588924             [                                                                                                                       GTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGCCGGGCCAGCTGTTCCCAACCCATCGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTT ATTTCTCGTGGCGTTGAGG ACATGTCCCACCAGAGACCAACGTGTCACAACCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTCCACTCCTGGACACTCACCATCATAACGCCCGCTGAG]
[+] EMBL FR0063869            [                                                                                                                         CCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGA TTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGGCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGGATTGCTCCAGCTATTCCACTTTCTGG GGCTGGCCAGCTGGTCCCAACCCATCGGCAAAC                                                                                                                                                                                                  ]
[+] EMBL CA591536             [                                                                                                                                                  ACTCCTCAGAACTCTATCGCATCTCTACCTTCTCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGGTCTACACGGGGGTGGGCGACCGCGTGCAGTGTATCAAGTGCAACGTGACACCCGAGGGCTGGCAAGCTGGATACTGTCCCAACGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCATGCATCCAGAGCCTCCCGTCCACG                                                                                                                                                                                                                                                                                                           ]


>consensus_2517#0 CGCACCGAGAAGCTTCCAGGACGAAATTGGGACTTTCTGCACCGGCTGACTCACACAGCA GATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTG TCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGC GCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACAC GGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGC TGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAG CCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGTAT TGCTCCAGCTATTCCACTTTCTGGTGGCGGGCCAGCTGTTCCCAACCCATCGGCAAACCA AGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCACCCTCAAGCCC ACTTATTTCTCGTGGCGTTGAGGACATGTCCCACCAGAGACCAACGTGTCACAACCCCAA CATGCGCAGAGAACAGGACCGCTTGGAATCCTTCCACTCCTGGACACTCACCATCATAAC GCCCGCTGAG



consensusID : consensus_2517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence
                              [TGACGTAATGAGAGAAGAGCAGCCATAGAATTCGACATTTTCAGACGGATTGTGCACTATAATAATGAAAAGAAAAAAAAACGAATCTCTTTGGCTATGGGGCATTCCAACAATTATGTCATTTGTTGTCGCGGAAATACCAAGAGAATGTATCATTGGACGGAACCTCTTATCGGATTCACTAGAAATTGATGTGACTGATAAACAACTAAAAGGGCGAATTTGAAGTCATTCGTAATATCCGTTATTATTTGGCATTCTGTCAGTTTTTCATTTATTGAGCAAATGCTAACTACACAATACTGAATAAGAGCCTAATGGGAAACACTGAAACTTCTTCGCTCTCTTTAGTGTGTCTGTGAGATCCTGGCTCTTTGCTCAGCCCTGACCCCCCCCTGGGAGGACCCACCTTTACTCTCATATTGCTCTGCTTTCATACAAAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTG]

[+] EMBL BU806218             [TGACGTAATGAGAGAAGAGCAGCCATAGAATTCGACATTTTCAGACGGATTGTGCACTATAATAATGAAAAGAAAAAAAAACGAATCTCTTTGGCTATGGGGCATTCCAACAATTATGTCATTTGTTGTCGCGGAAATACCAAGAGAATGTATCATTGGACGGAACCTCTTATCGGATTCACTAGAAATTGATGTGACTGATAAACAACTAAAAGGGCGAATTTGAAGTCATTCGTAATATCCGTTATTATTTGGCATTCTGTCAGTTTTTCATTTATTGAGCAAATGCTAACTACACAATACTGAATAAGAGCCTAATGGGAAACACTGAAACTTCTTCGCTCTCTTTAGTGTGTCTGTGAGATCCTGGCTCTTTGCTCAGCCCTGACCCCCCCCTGGGAGGACCCACCTTTACTCTCATATTGCTCTGCTTTCATACAAAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTG]


>consensus_2517#1 TGACGTAATGAGAGAAGAGCAGCCATAGAATTCGACATTTTCAGACGGATTGTGCACTAT AATAATGAAAAGAAAAAAAAACGAATCTCTTTGGCTATGGGGCATTCCAACAATTATGTC ATTTGTTGTCGCGGAAATACCAAGAGAATGTATCATTGGACGGAACCTCTTATCGGATTC ACTAGAAATTGATGTGACTGATAAACAACTAAAAGGGCGAATTTGAAGTCATTCGTAATA TCCGTTATTATTTGGCATTCTGTCAGTTTTTCATTTATTGAGCAAATGCTAACTACACAA TACTGAATAAGAGCCTAATGGGAAACACTGAAACTTCTTCGCTCTCTTTAGTGTGTCTGT GAGATCCTGGCTCTTTGCTCAGCCCTGACCCCCCCCTGGGAGGACCCACCTTTACTCTCA TATTGCTCTGCTTTCATACAAAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTT TGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAAC TCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTG



consensusID : consensus_2517#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence
                              [ATGGGCTTTCTTCCCGCTGACTCACACAGCAGGTGGGGGGACATCCTGCTCTTTGCTCACCCTGACCCCCCCCTGTGAGGACCCACCTTTACTCTCATATTGCTCGGTATCATACAAAGATGGAAACAACTTGTTCAACTCAAGAACAACCCGTTTTTGATGTGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTATACCTTCGCGCGATTGCCGACTTCGAGGGGGACTGAGCGTAGCCTGGCCCGTACCGCGTGGAT]

[+] EMBL FR0058619            [ATGGGCTTTCTTCCCGCTGACTCACACAGCAGGTGGGGGGACATCCTGCTCTTTGCTCACCCTGACCCCCCCCTGTGAGGACCCACCTTTACTCTCATATTGCTCGGTATCATACAAAGATGGAAACAACTTGTTCAACTCAAGAACAACCCGTTTTTGATGTGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTATACCTTCGCGCGATTGCCGACTTCGAGGGGGACTGAGCGTAGCCTGGCCCGTACCGCGTGGAT]


>consensus_2517#2 ATGGGCTTTCTTCCCGCTGACTCACACAGCAGGTGGGGGGACATCCTGCTCTTTGCTCAC CCTGACCCCCCCCTGTGAGGACCCACCTTTACTCTCATATTGCTCGGTATCATACAAAGA TGGAAACAACTTGTTCAACTCAAGAACAACCCGTTTTTGATGTGGCTGTGTCGCAACTGT CCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTATACCTTCGCG CGATTGCCGACTTCGAGGGGGACTGAGCGTAGCCTGGCCCGTACCGCGTGGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2517#1      TGACGTAATGAGAGAAGAGCAGCCATAGAATTCGACATTTTCAGACGGATTGTGCACTAT 60
consensus_2517#2      ------------------------------------------------------------
consensus_2517#0      ---CGCACCGAGAAGCTTCCAGG-ACGAAATTGGGACTTTCTGCACCGGCTG---ACTCA 53
                                                                                  

consensus_2517#1      AATAATGAAAAGAAAAAAAAACGAATCTCTTTGGCTATGGGGCATTCCAACAATTATGTC 120
consensus_2517#2      ------------------------------------------------------------
consensus_2517#0      CACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTC 113
                                                                                  

consensus_2517#1      ATTTGTTGTCGCGGAAATACCAAGAGAATGTATCATTGGACGGAACCTCTTATCGGATTC 180
consensus_2517#2      ------------------------------------------------------------
consensus_2517#0      GCAACTGTCCGCCACCTGACCTGCAGTATG-ACAACTCCTCAGAACTCTATCGCATCTCT 172
                                                                                  

consensus_2517#1      ACTAGAAATTGATGT--GACTG-ATAAACAACTAAAAG--GGCGAATTTGAAGTCATTCG 235
consensus_2517#2      ------------------------------------------------------------
consensus_2517#0      ACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGG 232
                                                                                  

consensus_2517#1      TAATATCCGTTATTATTTGGCATTCTGTCAGTTTTTCATTTATTGAGCAAATGCTAACTA 295
consensus_2517#2      ------------------------------------------------------------
consensus_2517#0      TTCTACACGGGGGTGGGCGACCGCGTG-CAGTGTTTCAAGTGCAACGTGACAGCCGAGGG 291
                                                                                  

consensus_2517#1      CACA-ATACTGAATAAGAGCCTAATGGGAAACACTGA-AACTTCTTCGCTCTCTTTAGTG 353
consensus_2517#2      -----------------------ATGGGCTTTCTTCC-CGCTGACTCACAC-----AGCA 31
consensus_2517#0      CTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTT 351
                                               *              **    *   *      *  

consensus_2517#1      TGTCTGTGAGATCCTGGCTCTTTGCTCAGCCCTGACCCCCCCCTGGGAGGACCCACCTTT 413
consensus_2517#2      GGTGGGGGGACATCCTGCTCTTTGCTCA-CCCTGACCCCCCCCTGTGAGGACCCACCTTT 90
consensus_2517#0      CATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCC 411
                        *          *   *    *       ***  ** ** *       * *    *   

consensus_2517#1      ACTCTCATATTGCTCTGC---TTTCATACAAAGATGG-AAACA-CTTGTTC--AACTCAA 466
consensus_2517#2      ACTCTCATATTGCTCGG----TATCATACAAAGATGG-AAACAACTTGTTC--AACTCAA 143
consensus_2517#0      ACT-TCGTATTGCTCCAGCTATTCCACTTTCTGGTGGCGGGCCAGCTGTTCCCAACCCAT 470
                      *** ** ********      *  **      * ***    *    *****  *** ** 

consensus_2517#1      GAACAACCCGTTTTTGATGG------GGCTGTGT-----CGCAACTGTCCGCCACCTGAC 515
consensus_2517#2      GAACAACCCGTTTTTGATGT------GGCTGTGT-----CGCAACTGTCCGCCACCTGAC 192
consensus_2517#0      CGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCAC 530
                         *** **    *  *         **** * *      *    * *****  *   **

consensus_2517#1      CTGCAGTATGACA-ACTCCTCAGAACTCTATCG-CATCTCT--------ACCTTCGCGCG 565
consensus_2517#2      CTGCAGTATGACA-ACTCCTCAGAACTCTATCG-CATCTAT--------ACCTTCGCGCG 242
consensus_2517#0      CCTCAAGCCCACTTATTTCTCGTGGCGTTGAGGACATGTCCCACCAGAGACCAACGTGTC 590
                      *  **     **  * * ***    *  *   * *** *          ***  ** *  

consensus_2517#1      AT--TTCCGACTTCGGGGGTG--------------------------------------- 584
consensus_2517#2      AT--TGCCGACTTCGAGGGGGACTGAGCGTAGCCTGGCCCGTACCGCGTGGAT------- 293
consensus_2517#0      ACAACCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTCCACTCCTGGACACTCA 650
                      *     ** ** *     * *                                       

consensus_2517#1      --------------------
consensus_2517#2      --------------------
consensus_2517#0      CCATCATAACGCCCGCTGAG 670
                                          




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)