These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 670 fasta sequence [CGCACCGAGAAGCTTCCAGGACGAAATTGGGACTTTCTGCACCGGCTGACTCACACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGGCGGGCCAGCTGTTCCCAACCCATCGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTT-ATTTCTCGTGGCGTTGAGG-ACATGTCCCACCAGAGACCAACGTGTCACAACCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTCCACTCCTGGACACTCACCATCATAACGCCCGCTGAG] [+] EMBL CA590474 [CGCACCGAGAAGCTTCCAGGACGAAATTGGGACTTTCTGCACCGGCTGACTCACACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGGACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGGCGGGCCAGCTGTTCCCCACCCATCGGCAAACCAAGGTGAAGAGCCCAGTGGCTATCTGAACATAGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTTAATTTCTCGGGGGGTTGAGGAAAATGTCCCCCCGAAGACCAAAGTGGCACAACCCGCAa ] [+] EMBL BU805128 [ AATTGGGACTTTCTGCACCGGCTGACTCACACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCTAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGCTGGGCCAGCTGTTCCCAACCCATCGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTT ATATCTCGTGGCGTTGAGG ACATGTCCCACCAGAGACCAACGTGTCACAATCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTC ] [+] EMBL CA588924 [ GTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGTATTGCTCCAGCTATTCCACTTTCTGGTGCCGGGCCAGCTGTTCCCAACCCATCGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCACCCTCAAGCCCACTT ATTTCTCGTGGCGTTGAGG ACATGTCCCACCAGAGACCAACGTGTCACAACCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTCCACTCCTGGACACTCACCATCATAACGCCCGCTGAG] [+] EMBL FR0063869 [ CCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGA TTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGGCTTGCTCGTTCATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCCACTTCGGATTGCTCCAGCTATTCCACTTTCTGG GGCTGGCCAGCTGGTCCCAACCCATCGGCAAAC ] [+] EMBL CA591536 [ ACTCCTCAGAACTCTATCGCATCTCTACCTTCTCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGGGTCTACACGGGGGTGGGCGACCGCGTGCAGTGTATCAAGTGCAACGTGACACCCGAGGGCTGGCAAGCTGGATACTGTCCCAACGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCATGCATCCAGAGCCTCCCGTCCACG ] consensusID : consensus_2517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [TGACGTAATGAGAGAAGAGCAGCCATAGAATTCGACATTTTCAGACGGATTGTGCACTATAATAATGAAAAGAAAAAAAAACGAATCTCTTTGGCTATGGGGCATTCCAACAATTATGTCATTTGTTGTCGCGGAAATACCAAGAGAATGTATCATTGGACGGAACCTCTTATCGGATTCACTAGAAATTGATGTGACTGATAAACAACTAAAAGGGCGAATTTGAAGTCATTCGTAATATCCGTTATTATTTGGCATTCTGTCAGTTTTTCATTTATTGAGCAAATGCTAACTACACAATACTGAATAAGAGCCTAATGGGAAACACTGAAACTTCTTCGCTCTCTTTAGTGTGTCTGTGAGATCCTGGCTCTTTGCTCAGCCCTGACCCCCCCCTGGGAGGACCCACCTTTACTCTCATATTGCTCTGCTTTCATACAAAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTG] [+] EMBL BU806218 [TGACGTAATGAGAGAAGAGCAGCCATAGAATTCGACATTTTCAGACGGATTGTGCACTATAATAATGAAAAGAAAAAAAAACGAATCTCTTTGGCTATGGGGCATTCCAACAATTATGTCATTTGTTGTCGCGGAAATACCAAGAGAATGTATCATTGGACGGAACCTCTTATCGGATTCACTAGAAATTGATGTGACTGATAAACAACTAAAAGGGCGAATTTGAAGTCATTCGTAATATCCGTTATTATTTGGCATTCTGTCAGTTTTTCATTTATTGAGCAAATGCTAACTACACAATACTGAATAAGAGCCTAATGGGAAACACTGAAACTTCTTCGCTCTCTTTAGTGTGTCTGTGAGATCCTGGCTCTTTGCTCAGCCCTGACCCCCCCCTGGGAGGACCCACCTTTACTCTCATATTGCTCTGCTTTCATACAAAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTCTACCTTCGCGCGATTTCCGACTTCGGGGGTG] consensusID : consensus_2517#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [ATGGGCTTTCTTCCCGCTGACTCACACAGCAGGTGGGGGGACATCCTGCTCTTTGCTCACCCTGACCCCCCCCTGTGAGGACCCACCTTTACTCTCATATTGCTCGGTATCATACAAAGATGGAAACAACTTGTTCAACTCAAGAACAACCCGTTTTTGATGTGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTATACCTTCGCGCGATTGCCGACTTCGAGGGGGACTGAGCGTAGCCTGGCCCGTACCGCGTGGAT] [+] EMBL FR0058619 [ATGGGCTTTCTTCCCGCTGACTCACACAGCAGGTGGGGGGACATCCTGCTCTTTGCTCACCCTGACCCCCCCCTGTGAGGACCCACCTTTACTCTCATATTGCTCGGTATCATACAAAGATGGAAACAACTTGTTCAACTCAAGAACAACCCGTTTTTGATGTGGCTGTGTCGCAACTGTCCGCCACCTGACCTGCAGTATGACAACTCCTCAGAACTCTATCGCATCTATACCTTCGCGCGATTGCCGACTTCGAGGGGGACTGAGCGTAGCCTGGCCCGTACCGCGTGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2517#1 TGACGTAATGAGAGAAGAGCAGCCATAGAATTCGACATTTTCAGACGGATTGTGCACTAT 60 consensus_2517#2 ------------------------------------------------------------ consensus_2517#0 ---CGCACCGAGAAGCTTCCAGG-ACGAAATTGGGACTTTCTGCACCGGCTG---ACTCA 53 consensus_2517#1 AATAATGAAAAGAAAAAAAAACGAATCTCTTTGGCTATGGGGCATTCCAACAATTATGTC 120 consensus_2517#2 ------------------------------------------------------------ consensus_2517#0 CACAGCAGATGGAAACACTTGTTCAACTCAAGAACAACCCGTTTTTGATGGGGCTGTGTC 113 consensus_2517#1 ATTTGTTGTCGCGGAAATACCAAGAGAATGTATCATTGGACGGAACCTCTTATCGGATTC 180 consensus_2517#2 ------------------------------------------------------------ consensus_2517#0 GCAACTGTCCGCCACCTGACCTGCAGTATG-ACAACTCCTCAGAACTCTATCGCATCTCT 172 consensus_2517#1 ACTAGAAATTGATGT--GACTG-ATAAACAACTAAAAG--GGCGAATTTGAAGTCATTCG 235 consensus_2517#2 ------------------------------------------------------------ consensus_2517#0 ACCTTCGCGCGATTTCCGACTTCGGGGGTGACTGAGCGTAGCCTGGCCCGGGCCGGCTGG 232 consensus_2517#1 TAATATCCGTTATTATTTGGCATTCTGTCAGTTTTTCATTTATTGAGCAAATGCTAACTA 295 consensus_2517#2 ------------------------------------------------------------ consensus_2517#0 TTCTACACGGGGGTGGGCGACCGCGTG-CAGTGTTTCAAGTGCAACGTGACAGCCGAGGG 291 consensus_2517#1 CACA-ATACTGAATAAGAGCCTAATGGGAAACACTGA-AACTTCTTCGCTCTCTTTAGTG 353 consensus_2517#2 -----------------------ATGGGCTTTCTTCC-CGCTGACTCACAC-----AGCA 31 consensus_2517#0 CTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGCAGCTGTCGCCGTCTTGCTCGTT 351 * ** * * * consensus_2517#1 TGTCTGTGAGATCCTGGCTCTTTGCTCAGCCCTGACCCCCCCCTGGGAGGACCCACCTTT 413 consensus_2517#2 GGTGGGGGGACATCCTGCTCTTTGCTCA-CCCTGACCCCCCCCTGTGAGGACCCACCTTT 90 consensus_2517#0 CATCCAGAGCCTCCCGTCCACGTCGAACCTCCTCTCCTCCTCGCACTCTGCCTTTTCCCC 411 * * * * *** ** ** * * * * consensus_2517#1 ACTCTCATATTGCTCTGC---TTTCATACAAAGATGG-AAACA-CTTGTTC--AACTCAA 466 consensus_2517#2 ACTCTCATATTGCTCGG----TATCATACAAAGATGG-AAACAACTTGTTC--AACTCAA 143 consensus_2517#0 ACT-TCGTATTGCTCCAGCTATTCCACTTTCTGGTGGCGGGCCAGCTGTTCCCAACCCAT 470 *** ** ******** * ** * *** * ***** *** ** consensus_2517#1 GAACAACCCGTTTTTGATGG------GGCTGTGT-----CGCAACTGTCCGCCACCTGAC 515 consensus_2517#2 GAACAACCCGTTTTTGATGT------GGCTGTGT-----CGCAACTGTCCGCCACCTGAC 192 consensus_2517#0 CGGCAAACCAAGGTGAAGAGCCAGTTGGCTATCTGAACATGGGTTTCTCCGCTCCGCCAC 530 *** ** * * **** * * * * ***** * ** consensus_2517#1 CTGCAGTATGACA-ACTCCTCAGAACTCTATCG-CATCTCT--------ACCTTCGCGCG 565 consensus_2517#2 CTGCAGTATGACA-ACTCCTCAGAACTCTATCG-CATCTAT--------ACCTTCGCGCG 242 consensus_2517#0 CCTCAAGCCCACTTATTTCTCGTGGCGTTGAGGACATGTCCCACCAGAGACCAACGTGTC 590 * ** ** * * *** * * * *** * *** ** * consensus_2517#1 AT--TTCCGACTTCGGGGGTG--------------------------------------- 584 consensus_2517#2 AT--TGCCGACTTCGAGGGGGACTGAGCGTAGCCTGGCCCGTACCGCGTGGAT------- 293 consensus_2517#0 ACAACCCCAACATGCGCAGAGAACAGGACCGCTTGGAATCCTTCCACTCCTGGACACTCA 650 * ** ** * * * consensus_2517#1 -------------------- consensus_2517#2 -------------------- consensus_2517#0 CCATCATAACGCCCGCTGAG 670 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |