These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 993 fasta sequence [AATAACGTCTCTCCGACTAATGAAGCCACAACAGCGCCCGTCACCACAACTGCCCGGTGCAACGAACCATGGGACAAGTACCGGCTGCCCAAGAGCCTGGTTCCCCAGAGCTACAAGGTCACGCTGTGGCCCCGGCTCACCCCGGACGAGAACGGTCTTTACATCTTTAGTGGTGAATCCACTGTGGAGTTTGAGTGTGTTGAGGACACCGACCTGATTCTCATTCATTCCAACAAGCTGAACTACAACGAACAACCCAACAAGCATCTGGCTCAGCTGACGGCGCTGGGTGGTGCTGACGCTCCGTCCATCACAGAGTCCAGGCTGGAGCCCGTGACCCAGAACATGGGCCTACGGCTGGGCGCTAACCTGGGGAAGGGCAGCAGATACAGTCTCCACACTGTATTTACAGGGGAGCTGGCTGACGACCTGGGGGGCTTCTACAGAAGCGAGTACGTCGAGGACGGCAAAACAAAGGTGGTCGCCACCACGCAGATGCAACCCACCGATGCCAGGAAGGCGTTCCCCTGCTTCGATGAGCCGGCTCTCAAAGCCACCTTCAACATCACTCTGCTCCATGACAACAACACCGTGGCGCTCTCCAACGGCAGACAGCTGGAATCGGGACCCTTCCAACAGGACGATAAATGGATCCTCAGGACGGTTTTTGAGGAAACACCAAGAATGTCCACCTACCTGCTGGCCTTCATCGTCAGTGAATTTGACTACATCAACAACACCGTGGATGACGTCTTGATCAGAATCTTCGCCCGGAAGTCTGCTATTGCTGCTAACCAGGGAGAATACGCCCTGAACAAGACGGGTCTGATCCTGCAGTTCTTTGAGGACTACTACAACATCAGCTACCCTCTGCTCAAATCTGATCAGATTGCGCTNCNNCCAGAACTTCAATGGCCTGGTGCCATGGGGAGAACTGGGGGCTGATCACCTACAGGGAGACTGCCCCTGCTCTATGATCCCAGCCTCTCCCTC] [+] EMBL FR0059299 [AATAACGTCTCTCCGACTAATGAAGCCACAACAGCGCCCGTCACCACAACTGCCCGGTGCAACGAACCATGGGACAAGTACCGGCTGCCCAAGAGCCTGGTTCCCCAGAGCTACAAGGTCACGCTGTGGCCCCGGCTCACCCCGGACGAGAACGGTCTTTACATCTTTAGTGGTGAATCCACTGTGGAGTTTGAGTGTGTTGAGGACACCGACCTGATTCTCATTCATTCCAACAAGCTGAACTACAACAAACAACCCAACAAGCATCTGGCTCAGCTGACGGCGCTGGGTGGTGCTGACGCTCCGTCCATCACAGAGTCCAGGCTGGAGCCCGTGACCCAGAACATGGGCCTACGGCTGGGCGCTAACCTGGGGAAGGGCAGCAG ] [+] EMBL CA589539 [ AGCTGAACTACAACGAACAACCCAACAAGCATCTGGCTCAGCTGACGGCGCTGGGTGGTGCTGACGCTCCGTCCATCACAGAGTCCAGGCTGGAGCCCGTGACCCAGTACATGGTCCTACGGCTGGGCGCTAACCTGGTGAAGGGCAGCAGATACAGTCTCCACACTGTATTTACAGGGGAGCTGGCTGACGACCTGGGGGGCTTCTACAGAAGCGAGTACGTCGAGGACGGCAAAACAAAGGTGGTCGCCACCACGCAGATGCAACCCACCGATGCCAGGAAGGCGTTCCCCTGCTTCGATGAGCCGGCTCTCAAAGCCACCTTCAACATCACTCTGCTCCATGACAACAACACCGTGGCGCTCTCCAACGGCAGACAGCTGGAATCGGGACCCTTCCAACAGGACGATAAATGGATCCTCAGGACGGTTTTTGAGGAAACACCAAGAATGTCCACCTACCTGCTGGCCTTCATCGTCAGTGAATTTGACTACATCAACAACACCGTGGATGACGTCTTGATCAGAATCTTCGCCCGGAAGTCTGCTATTGCTGCTAACCAGGGAGAATACGCCCTGAACAAGACGGGTCTGATCCTGCAGTTCTTTG ] [+] EMBL CA590892 [ GGATGACGTCTTGATCAGAATCTTCGCCCGGAAGTCTGCTATTGCTGCTAACCAGGGAGAATACGCCCTGAACAAGACGGGTCTGATCCTGCAGTTCTTTGAGGACTACTACAACATCAGCTACCCTCTGCTCAAATCTGATCAGATTGCGCTNCNNCCAGAACTTCAATGGCCTGGTGCCATGGGGAGAACTGGGGGCTGATCACCTACAGGGAGACTGCCCCTGCTCTATGATCCCAGCCTCTCCCTC] consensusID : consensus_2534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 804 fasta sequence [GCCCTGAACAAGAGGGGAGAGATCCTGCAGTTCTTTGAGGACTACTACAACATCA-GCTACCCTCTGCTCAAATCTGATCAGATTGCACTCCCAGACTTCAATGCTGGGGCCATGGAGAACTGGGGCCTGATCACCTACAGGGAGACTGCCCTGCTCTATGATCCCAGCTTCTCCTCCAACTCCAACAAGGAACGGGTGGCGACCATCATCGCCCATGAGCTGGCTCACATGTGGTTCGGTAATCTGGTCACCCTGGACTGGTGGAACGACCTGTGGCTGAACGAGGGC-TTTGCGTCCTACGTGGAGTACCTGGGGGCGGATAAAGCTGAGCCCGACTGGAACGTGAAAGATCTGATCGTTCTGAACGATGTCCACCGGGTGTTTGCCATTGATGCCCTGACCTCCTCACACCCCCTGTCCTCCAGAGAAGAGGACATCCAGAAGCCAGCACAGATCAGTGAGCTCTTTGGTGCTATTTCTTACAGCAAGGGCGCGTCGGATCTGAGGATGCTGGCGGATTTCTTAACTGAAGATGTCTTCAAAGCAGGACTCACGAGCTACTTAACTAAGTTTGAGTTTGAGAACGCCGTCTACACCGACCTGTGGGACCACCTCCAAATGGCTGTGAACAGCAGCAGCCTCAGACTGAACAACTCAGTGGCTGAAATCATGAACACCTGGGTGCTGCAGATGGGCTTCCCTGTGGTCACCATCAACACCACCACTGGGCAGGTGTCCCAGGAGCACTTCCTGTTGGACCGAGACTCTGATGTCACGCCGTCTCCCCTCGGTTATAAATGGATT] [+] EMBL FR0059371 [GCCCTGAACAAGACGGGTCTGATCCTGCAGTTCTTTGAGGACTACTACAACATGA GCTACCCTCTGCTCAAATCTGATCAGATCGCACTCCCAGACTTCAATGCTGGAGCCATGGAGAACTGGGGCCTGATCACCTACAGGGAGACTGCCCTGCTCTATGATCCCAGCTTCTCCTCCAACTCCAACAAGGAACGGGTGGCGACCATCATCGCCCATGAGCTGGCTCACATGTGGTTCGGTAATCTGGTCACCCTGGACTGGTGGAACGACCTGTGGCTGAACGAGGGC TTTGCGGCCTACGTGGAGTACCTGGGGGCGGATAAAGCTGAGCCCGACTGGAACGTGAAAGATCTGATCGTTCTGAACGATGTCCACCGGGTGGTTGCCATTGATGCCCTGACCTTCTTAAAACCCC ] [+] EMBL CA588311 [ cgtacAGAGATCCTGCAGTTCTTTGAGGACTACTACAACATCACCCTACCCTCTGCTCAAATCTGATCAGATTGCACTCCCAGACTTCAATGCTGGTGCCACGGAGAACTGGGGCCTGATCACCTACAGGGAGACTGCCCTGCTCTATGATCCCAGCTTCTCCTCCAACTCCAACAAGGAACGGGTGGCGACCATCATCGCCCATGAGCTGGCTCACATGTGGTTCGGTAATCTGGTCACCCTGGACTGGTGGAACGACCTGTGGCTGAACGAGGGC TTTGCGTCCTACGTGGAGTACCTGGGGGCGGATAGAGCTGAGCCCGACTGGAACGTGAAAGATCTGATCGTTCTGAACGATGTCCACCGGGTGTTTGCCATTGATGCCCTGACCTCCTCACACCCCCTGTCCTCCAGAGAAGAGGACATCCAGAAGCCAGCACAGATCAGTGAGCTCTTTGATGCTATTTCTTACAGCAAGGGCGCGTCGGTTCTGAGGATGCTGTCGGATTTCTTAACTGAAGATGTCTTCAAAGCAGGACTCACGAGCTACTTAACTAAGTTTAAGTTTGAGAACGCCGTCTACACCGACCTGTGGGACCACCTCCAAATGGCTGTGAACAGCAGCAGCCTCAGACTGAACAACTCAGTGGCTGAAATCATGAACACCTGGGTGCTGCAGATGGGCTTCCCTGTGGTCACCATCAACACCACCACTGGGCAGGTGTCCCAGGAGCACTTCCTGTTGGACCGAGACTCTGATGTCACGCCGTCTCCCCTCGGTTATAAATGGATT] [+] EMBL FR0059417 [ TCGTTGAGGACTACTACAACATCA GCTACCCTCTGCTCAAATCTGATCAGATTGCACTCCCAGACTTCAATGCTGGGGCCATGGAGAACTGGGGCCTGATCACCTACAGGGAGACTGCCCTGCTCTATGATCCCAGCTTCTCCTCCAACTCCAACAAGGAACGGGTGGCGACCATCATCGCCCATGAGCTGGCTCACATGTGGGTCGGAAATCTGGTCACCCTGGACTGTGGGAACGACCTGTGGCTGAACGAGGGCTTTTGGGCCCTACGGGGAGTACCTGGGGGCGGATAAAGCTGAGCCCGACTGGA ] [+] EMBL CA589783 [ ACGACCTGTGGCTGAACGAGGGC TTTGCGTCCTACGTGGAGTACCTGGGGGCGGATAAAGCTGAGCCCGACTGGAACGTGAAAGATCTGATCGTTCTGAACGATGTCCACCGGGTGTTTGGCATTGATGCCCTGACCTCCTCACACCCCCTGTCCTCCAGAGAAGAGGACATCCAGAAGCCATTTTTTATCAGTGAGCTCTTTGGTGCTATTTCTTACAGCAAGGGCGCGTCCGATCTGAGGATGCTGGCGGATTTCTTAACTGAAGATGTCTTCAAAGCAGGACTCACGAGCTACTTAACTAAGTTTGAGTTTGAGAACGCCGTCTACACCGACCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2534#0 AATAACGTCTCTCCGACTAATGAAGCCACAACAGCGCCCGTCACCACAACTGCCCGGTGC 60 consensus_2534#1 ------------------------------------------------------------ consensus_2534#0 AACGAACCATGGGACAAGTACCGGCTGCCCAAGAGCCTG--GTTCCCC-AGAGCTACAAG 117 consensus_2534#1 ------------GCCCTGAACAAGAGGGGAGAGATCCTGCAGTTCTTTGAGGACTACTAC 48 * * * ** * * *** **** **** ** **** * consensus_2534#0 GTCACGCTGTGGCCCCGGCTCACCCCGGACGAGAACGGTCTTTACATCTTTAGTGGTGAA 177 consensus_2534#1 AACATCAGCTACCCTCTGCTCAAATCTGATCAGATTGCACTCCCAGACTTCAATGCTGGG 108 ** * ** * ***** * ** *** * ** *** * ** ** consensus_2534#0 TCCACTGTGGAGTTTGAGTGTGTTGAGGACACCGACCTGATTCTCATTCATTCCAACAAG 237 consensus_2534#1 GCCA-TGGAGAACTGGGGCCTGAT-----CACCTACAGGGAGACTGCCCTGCTCTATGAT 162 *** ** ** * * * ** * **** ** * * * * * consensus_2534#0 CTGAACTACAACGAACAACCCAACAAGCATCTGGCTCAGCTGACGGCGCTGGGTGGTGCT 297 consensus_2534#1 CCCAGCTTCTCCTCCAACTCCAACAAGGA---------ACGGGTGGCGACCATCATCGCC 213 * * ** * * * ******** * * * **** ** consensus_2534#0 GACGCTCCGTCCATCACAGAGTCCAGGCTGGAGCCCGTGACCCAGAACATGGGCCTACGG 357 consensus_2534#1 CATGAGCTGGCTCACATGTGGTTCGGT---AATCTGGTCACCCTGGAC-TGGTGGAACGA 269 * * * * * ** ** * * * * ** **** * ** *** *** consensus_2534#0 CTGGGCGCTAACCTGGGGAAGGGCAGCAGATACAGTCT-CCACACTGTATTTACAGGGGA 416 consensus_2534#1 CCTGTGGCTGAACGAGGGCTTTGCGTCCTACGTGGAGTACCTGGGGGCGGATAAAGCTGA 329 * * *** * * *** ** * * * * ** * ** ** ** consensus_2534#0 GCTGGCTGACGACCTGGGGGGCTTC----TACAGAAGCGAGTACGTCGAGGACGGCAAAA 472 consensus_2534#1 GCCCGACTGGAACGTGAAAGATCTGATCGTTCTGAACGATGTCCACCGGGTGTT-TGCCA 388 ** * ** ** * * * * *** ** * ** * * consensus_2534#0 CAAAGGTGGTCGCCACCACGCAGATGCAACCCACCGATGCCAGGAAGGCGTTCC----CC 528 consensus_2534#1 TTGATGCCCTGACCTCCTCACACCCCCTGTCCTCCAGAG--AAGAGGACATCCAGAAGCC 446 * * * ** ** * ** * ** ** * * ** * * * * ** consensus_2534#0 TGCTTCGATGAGCCGGCTCTCAAA-GCCACCTTCAACATCACTC-TGCTCCATGAC-AAC 585 consensus_2534#1 AGCACAGATCAGTGAGCTCTTTGGTGCTATTTCTTACAGCAAGGGCGCGTCGGATCTGAG 506 ** *** ** ***** ** * * *** ** ** * * * consensus_2534#0 AACACCGTGGCGCTCTCCAACGGCAGACAGCTGGAATCGGGACCCTTCCAACAGGACGAT 645 consensus_2534#1 GATGCTGGCGGATTTCTTAACTGAAGATGTCTTCAAAGCAGGACTCACGAGCTACTTAAC 566 * * * * * *** * *** ** ** * * * * * * consensus_2534#0 AAA--TGGATCCTCAGGACGGTTTTTGAGGAAACACCAAGAATGTCCACCTACCTGCTGG 703 consensus_2534#1 TAAGTTTGAGTTTGAGAACGCCGTCTACACCGACCTGTGGGA---CCACCT-CCAAATGG 622 ** * ** * ** *** * * ** * * ****** ** *** consensus_2534#0 CCTTCATCGTCAGTGAATTTGACTACATCAACAACACCGTGGATGACGTCTTGATCAGAA 763 consensus_2534#1 CTGTGAACAGCAGCAGCCTCAGAC---TGAACAACTCAGTGGCTGAAATCATGAACA--- 676 * * * * *** * * ****** * **** *** ** *** ** consensus_2534#0 TCTTCGCCCGGAAGTCTGCTATTGCTGC--TAACCAGGGAGAATACGCCCTGAACAAGAC 821 consensus_2534#1 CCTGGGTGCTGCAGATGGGCTTCCCTGTGGTCACCATCAACACCAC-CACTGGGCAGG-T 734 ** * * * ** * * *** * **** * * ** * *** ** * consensus_2534#0 GGGTCTGATCCTGCAGTTCTTTGAGGACTACTACAACATCAGCTACCCTCTGCTCAAATC 881 consensus_2534#1 GTCCCAGGAGCACTTCCTGTTGGACCGAGACTCTGATGTCACGCCGTCTCCCCTCGGTTA 794 * * * * * ** ** *** * *** *** *** * consensus_2534#0 TGATCAGATTGCGCTNCNNCCAGAACTTCAATGGCCTGGTGCCATGGGGAGAACTGGGGG 941 consensus_2534#1 TAAATGGATT-------------------------------------------------- 804 * * **** consensus_2534#0 CTGATCACCTACAGGGAGACTGCCCCTGCTCTATGATCCCAGCCTCTCCCTC 993 consensus_2534#1 ---------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |