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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 993 fasta sequence
[AATAACGTCTCTCCGACTAATGAAGCCACAACAGCGCCCGTCACCACAACTGCCCGGTGCAACGAACCATGGGACAAGTACCGGCTGCCCAAGAGCCTGGTTCCCCAGAGCTACAAGGTCACGCTGTGGCCCCGGCTCACCCCGGACGAGAACGGTCTTTACATCTTTAGTGGTGAATCCACTGTGGAGTTTGAGTGTGTTGAGGACACCGACCTGATTCTCATTCATTCCAACAAGCTGAACTACAACGAACAACCCAACAAGCATCTGGCTCAGCTGACGGCGCTGGGTGGTGCTGACGCTCCGTCCATCACAGAGTCCAGGCTGGAGCCCGTGACCCAGAACATGGGCCTACGGCTGGGCGCTAACCTGGGGAAGGGCAGCAGATACAGTCTCCACACTGTATTTACAGGGGAGCTGGCTGACGACCTGGGGGGCTTCTACAGAAGCGAGTACGTCGAGGACGGCAAAACAAAGGTGGTCGCCACCACGCAGATGCAACCCACCGATGCCAGGAAGGCGTTCCCCTGCTTCGATGAGCCGGCTCTCAAAGCCACCTTCAACATCACTCTGCTCCATGACAACAACACCGTGGCGCTCTCCAACGGCAGACAGCTGGAATCGGGACCCTTCCAACAGGACGATAAATGGATCCTCAGGACGGTTTTTGAGGAAACACCAAGAATGTCCACCTACCTGCTGGCCTTCATCGTCAGTGAATTTGACTACATCAACAACACCGTGGATGACGTCTTGATCAGAATCTTCGCCCGGAAGTCTGCTATTGCTGCTAACCAGGGAGAATACGCCCTGAACAAGACGGGTCTGATCCTGCAGTTCTTTGAGGACTACTACAACATCAGCTACCCTCTGCTCAAATCTGATCAGATTGCGCTNCNNCCAGAACTTCAATGGCCTGGTGCCATGGGGAGAACTGGGGGCTGATCACCTACAGGGAGACTGCCCCTGCTCTATGATCCCAGCCTCTCCCTC]
[+] EMBL FR0059299 [AATAACGTCTCTCCGACTAATGAAGCCACAACAGCGCCCGTCACCACAACTGCCCGGTGCAACGAACCATGGGACAAGTACCGGCTGCCCAAGAGCCTGGTTCCCCAGAGCTACAAGGTCACGCTGTGGCCCCGGCTCACCCCGGACGAGAACGGTCTTTACATCTTTAGTGGTGAATCCACTGTGGAGTTTGAGTGTGTTGAGGACACCGACCTGATTCTCATTCATTCCAACAAGCTGAACTACAACAAACAACCCAACAAGCATCTGGCTCAGCTGACGGCGCTGGGTGGTGCTGACGCTCCGTCCATCACAGAGTCCAGGCTGGAGCCCGTGACCCAGAACATGGGCCTACGGCTGGGCGCTAACCTGGGGAAGGGCAGCAG ]
[+] EMBL CA589539 [ AGCTGAACTACAACGAACAACCCAACAAGCATCTGGCTCAGCTGACGGCGCTGGGTGGTGCTGACGCTCCGTCCATCACAGAGTCCAGGCTGGAGCCCGTGACCCAGTACATGGTCCTACGGCTGGGCGCTAACCTGGTGAAGGGCAGCAGATACAGTCTCCACACTGTATTTACAGGGGAGCTGGCTGACGACCTGGGGGGCTTCTACAGAAGCGAGTACGTCGAGGACGGCAAAACAAAGGTGGTCGCCACCACGCAGATGCAACCCACCGATGCCAGGAAGGCGTTCCCCTGCTTCGATGAGCCGGCTCTCAAAGCCACCTTCAACATCACTCTGCTCCATGACAACAACACCGTGGCGCTCTCCAACGGCAGACAGCTGGAATCGGGACCCTTCCAACAGGACGATAAATGGATCCTCAGGACGGTTTTTGAGGAAACACCAAGAATGTCCACCTACCTGCTGGCCTTCATCGTCAGTGAATTTGACTACATCAACAACACCGTGGATGACGTCTTGATCAGAATCTTCGCCCGGAAGTCTGCTATTGCTGCTAACCAGGGAGAATACGCCCTGAACAAGACGGGTCTGATCCTGCAGTTCTTTG ]
[+] EMBL CA590892 [ GGATGACGTCTTGATCAGAATCTTCGCCCGGAAGTCTGCTATTGCTGCTAACCAGGGAGAATACGCCCTGAACAAGACGGGTCTGATCCTGCAGTTCTTTGAGGACTACTACAACATCAGCTACCCTCTGCTCAAATCTGATCAGATTGCGCTNCNNCCAGAACTTCAATGGCCTGGTGCCATGGGGAGAACTGGGGGCTGATCACCTACAGGGAGACTGCCCCTGCTCTATGATCCCAGCCTCTCCCTC]
consensusID : consensus_2534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 804 fasta sequence
[GCCCTGAACAAGAGGGGAGAGATCCTGCAGTTCTTTGAGGACTACTACAACATCA-GCTACCCTCTGCTCAAATCTGATCAGATTGCACTCCCAGACTTCAATGCTGGGGCCATGGAGAACTGGGGCCTGATCACCTACAGGGAGACTGCCCTGCTCTATGATCCCAGCTTCTCCTCCAACTCCAACAAGGAACGGGTGGCGACCATCATCGCCCATGAGCTGGCTCACATGTGGTTCGGTAATCTGGTCACCCTGGACTGGTGGAACGACCTGTGGCTGAACGAGGGC-TTTGCGTCCTACGTGGAGTACCTGGGGGCGGATAAAGCTGAGCCCGACTGGAACGTGAAAGATCTGATCGTTCTGAACGATGTCCACCGGGTGTTTGCCATTGATGCCCTGACCTCCTCACACCCCCTGTCCTCCAGAGAAGAGGACATCCAGAAGCCAGCACAGATCAGTGAGCTCTTTGGTGCTATTTCTTACAGCAAGGGCGCGTCGGATCTGAGGATGCTGGCGGATTTCTTAACTGAAGATGTCTTCAAAGCAGGACTCACGAGCTACTTAACTAAGTTTGAGTTTGAGAACGCCGTCTACACCGACCTGTGGGACCACCTCCAAATGGCTGTGAACAGCAGCAGCCTCAGACTGAACAACTCAGTGGCTGAAATCATGAACACCTGGGTGCTGCAGATGGGCTTCCCTGTGGTCACCATCAACACCACCACTGGGCAGGTGTCCCAGGAGCACTTCCTGTTGGACCGAGACTCTGATGTCACGCCGTCTCCCCTCGGTTATAAATGGATT]
[+] EMBL FR0059371 [GCCCTGAACAAGACGGGTCTGATCCTGCAGTTCTTTGAGGACTACTACAACATGA GCTACCCTCTGCTCAAATCTGATCAGATCGCACTCCCAGACTTCAATGCTGGAGCCATGGAGAACTGGGGCCTGATCACCTACAGGGAGACTGCCCTGCTCTATGATCCCAGCTTCTCCTCCAACTCCAACAAGGAACGGGTGGCGACCATCATCGCCCATGAGCTGGCTCACATGTGGTTCGGTAATCTGGTCACCCTGGACTGGTGGAACGACCTGTGGCTGAACGAGGGC TTTGCGGCCTACGTGGAGTACCTGGGGGCGGATAAAGCTGAGCCCGACTGGAACGTGAAAGATCTGATCGTTCTGAACGATGTCCACCGGGTGGTTGCCATTGATGCCCTGACCTTCTTAAAACCCC ]
[+] EMBL CA588311 [ cgtacAGAGATCCTGCAGTTCTTTGAGGACTACTACAACATCACCCTACCCTCTGCTCAAATCTGATCAGATTGCACTCCCAGACTTCAATGCTGGTGCCACGGAGAACTGGGGCCTGATCACCTACAGGGAGACTGCCCTGCTCTATGATCCCAGCTTCTCCTCCAACTCCAACAAGGAACGGGTGGCGACCATCATCGCCCATGAGCTGGCTCACATGTGGTTCGGTAATCTGGTCACCCTGGACTGGTGGAACGACCTGTGGCTGAACGAGGGC TTTGCGTCCTACGTGGAGTACCTGGGGGCGGATAGAGCTGAGCCCGACTGGAACGTGAAAGATCTGATCGTTCTGAACGATGTCCACCGGGTGTTTGCCATTGATGCCCTGACCTCCTCACACCCCCTGTCCTCCAGAGAAGAGGACATCCAGAAGCCAGCACAGATCAGTGAGCTCTTTGATGCTATTTCTTACAGCAAGGGCGCGTCGGTTCTGAGGATGCTGTCGGATTTCTTAACTGAAGATGTCTTCAAAGCAGGACTCACGAGCTACTTAACTAAGTTTAAGTTTGAGAACGCCGTCTACACCGACCTGTGGGACCACCTCCAAATGGCTGTGAACAGCAGCAGCCTCAGACTGAACAACTCAGTGGCTGAAATCATGAACACCTGGGTGCTGCAGATGGGCTTCCCTGTGGTCACCATCAACACCACCACTGGGCAGGTGTCCCAGGAGCACTTCCTGTTGGACCGAGACTCTGATGTCACGCCGTCTCCCCTCGGTTATAAATGGATT]
[+] EMBL FR0059417 [ TCGTTGAGGACTACTACAACATCA GCTACCCTCTGCTCAAATCTGATCAGATTGCACTCCCAGACTTCAATGCTGGGGCCATGGAGAACTGGGGCCTGATCACCTACAGGGAGACTGCCCTGCTCTATGATCCCAGCTTCTCCTCCAACTCCAACAAGGAACGGGTGGCGACCATCATCGCCCATGAGCTGGCTCACATGTGGGTCGGAAATCTGGTCACCCTGGACTGTGGGAACGACCTGTGGCTGAACGAGGGCTTTTGGGCCCTACGGGGAGTACCTGGGGGCGGATAAAGCTGAGCCCGACTGGA ]
[+] EMBL CA589783 [ ACGACCTGTGGCTGAACGAGGGC TTTGCGTCCTACGTGGAGTACCTGGGGGCGGATAAAGCTGAGCCCGACTGGAACGTGAAAGATCTGATCGTTCTGAACGATGTCCACCGGGTGTTTGGCATTGATGCCCTGACCTCCTCACACCCCCTGTCCTCCAGAGAAGAGGACATCCAGAAGCCATTTTTTATCAGTGAGCTCTTTGGTGCTATTTCTTACAGCAAGGGCGCGTCCGATCTGAGGATGCTGGCGGATTTCTTAACTGAAGATGTCTTCAAAGCAGGACTCACGAGCTACTTAACTAAGTTTGAGTTTGAGAACGCCGTCTACACCGACCTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2534#0 AATAACGTCTCTCCGACTAATGAAGCCACAACAGCGCCCGTCACCACAACTGCCCGGTGC 60
consensus_2534#1 ------------------------------------------------------------
consensus_2534#0 AACGAACCATGGGACAAGTACCGGCTGCCCAAGAGCCTG--GTTCCCC-AGAGCTACAAG 117
consensus_2534#1 ------------GCCCTGAACAAGAGGGGAGAGATCCTGCAGTTCTTTGAGGACTACTAC 48
* * * ** * * *** **** **** ** **** *
consensus_2534#0 GTCACGCTGTGGCCCCGGCTCACCCCGGACGAGAACGGTCTTTACATCTTTAGTGGTGAA 177
consensus_2534#1 AACATCAGCTACCCTCTGCTCAAATCTGATCAGATTGCACTCCCAGACTTCAATGCTGGG 108
** * ** * ***** * ** *** * ** *** * ** **
consensus_2534#0 TCCACTGTGGAGTTTGAGTGTGTTGAGGACACCGACCTGATTCTCATTCATTCCAACAAG 237
consensus_2534#1 GCCA-TGGAGAACTGGGGCCTGAT-----CACCTACAGGGAGACTGCCCTGCTCTATGAT 162
*** ** ** * * * ** * **** ** * * * * *
consensus_2534#0 CTGAACTACAACGAACAACCCAACAAGCATCTGGCTCAGCTGACGGCGCTGGGTGGTGCT 297
consensus_2534#1 CCCAGCTTCTCCTCCAACTCCAACAAGGA---------ACGGGTGGCGACCATCATCGCC 213
* * ** * * * ******** * * * **** **
consensus_2534#0 GACGCTCCGTCCATCACAGAGTCCAGGCTGGAGCCCGTGACCCAGAACATGGGCCTACGG 357
consensus_2534#1 CATGAGCTGGCTCACATGTGGTTCGGT---AATCTGGTCACCCTGGAC-TGGTGGAACGA 269
* * * * * ** ** * * * * ** **** * ** *** ***
consensus_2534#0 CTGGGCGCTAACCTGGGGAAGGGCAGCAGATACAGTCT-CCACACTGTATTTACAGGGGA 416
consensus_2534#1 CCTGTGGCTGAACGAGGGCTTTGCGTCCTACGTGGAGTACCTGGGGGCGGATAAAGCTGA 329
* * *** * * *** ** * * * * ** * ** ** **
consensus_2534#0 GCTGGCTGACGACCTGGGGGGCTTC----TACAGAAGCGAGTACGTCGAGGACGGCAAAA 472
consensus_2534#1 GCCCGACTGGAACGTGAAAGATCTGATCGTTCTGAACGATGTCCACCGGGTGTT-TGCCA 388
** * ** ** * * * * *** ** * ** * *
consensus_2534#0 CAAAGGTGGTCGCCACCACGCAGATGCAACCCACCGATGCCAGGAAGGCGTTCC----CC 528
consensus_2534#1 TTGATGCCCTGACCTCCTCACACCCCCTGTCCTCCAGAG--AAGAGGACATCCAGAAGCC 446
* * * ** ** * ** * ** ** * * ** * * * * **
consensus_2534#0 TGCTTCGATGAGCCGGCTCTCAAA-GCCACCTTCAACATCACTC-TGCTCCATGAC-AAC 585
consensus_2534#1 AGCACAGATCAGTGAGCTCTTTGGTGCTATTTCTTACAGCAAGGGCGCGTCGGATCTGAG 506
** *** ** ***** ** * * *** ** ** * * *
consensus_2534#0 AACACCGTGGCGCTCTCCAACGGCAGACAGCTGGAATCGGGACCCTTCCAACAGGACGAT 645
consensus_2534#1 GATGCTGGCGGATTTCTTAACTGAAGATGTCTTCAAAGCAGGACTCACGAGCTACTTAAC 566
* * * * * *** * *** ** ** * * * * * *
consensus_2534#0 AAA--TGGATCCTCAGGACGGTTTTTGAGGAAACACCAAGAATGTCCACCTACCTGCTGG 703
consensus_2534#1 TAAGTTTGAGTTTGAGAACGCCGTCTACACCGACCTGTGGGA---CCACCT-CCAAATGG 622
** * ** * ** *** * * ** * * ****** ** ***
consensus_2534#0 CCTTCATCGTCAGTGAATTTGACTACATCAACAACACCGTGGATGACGTCTTGATCAGAA 763
consensus_2534#1 CTGTGAACAGCAGCAGCCTCAGAC---TGAACAACTCAGTGGCTGAAATCATGAACA--- 676
* * * * *** * * ****** * **** *** ** *** **
consensus_2534#0 TCTTCGCCCGGAAGTCTGCTATTGCTGC--TAACCAGGGAGAATACGCCCTGAACAAGAC 821
consensus_2534#1 CCTGGGTGCTGCAGATGGGCTTCCCTGTGGTCACCATCAACACCAC-CACTGGGCAGG-T 734
** * * * ** * * *** * **** * * ** * *** ** *
consensus_2534#0 GGGTCTGATCCTGCAGTTCTTTGAGGACTACTACAACATCAGCTACCCTCTGCTCAAATC 881
consensus_2534#1 GTCCCAGGAGCACTTCCTGTTGGACCGAGACTCTGATGTCACGCCGTCTCCCCTCGGTTA 794
* * * * * ** ** *** * *** *** *** *
consensus_2534#0 TGATCAGATTGCGCTNCNNCCAGAACTTCAATGGCCTGGTGCCATGGGGAGAACTGGGGG 941
consensus_2534#1 TAAATGGATT-------------------------------------------------- 804
* * ****
consensus_2534#0 CTGATCACCTACAGGGAGACTGCCCCTGCTCTATGATCCCAGCCTCTCCCTC 993
consensus_2534#1 ----------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |