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Takifugu rubripes
cluster # 2538 cluster # 2538       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2538#0 length = 661 sequences # 6  
 consensus_2538#1 length = 232 sequences # 1  
consensusID : consensus_2538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 661
fasta sequence 
                              [GGGGTGGGTAGATTAGGTGCCGACACTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTTCTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCC-TTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC-GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGTGATTGGGGGAGGATCTGGAGGTCTTGCTTGCTCAAAGGAAGCGGCTCTATTGGGAAAGAAGGTCATGGTCCTGGACTATGTCGTGCCCACACCCAAAGGAACGTCCTGGGGTCTTGGTGGAA]

[+] EMBL CA590362             [GGGGTGGGTAGATTAGGTGCCGACACTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTTCTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCC TTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTC                                                                                                                               ]
[+] EMBL CA590789             [GGGGTGGGTAGATTAGGTGCCGACACTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTTCTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCCTTTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTACATCTGATAAGGGATGGAGCCGGGTACGAGGGGAGGTTGGTCGGAGATG CTGGG                                                                                                                                                                                                                                                                   ]
[+] EMBL BU808173             [                         CTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTTCTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCC TTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGTGATTGGGGGAGGATCTGGAGGTCTTGCTTGCTCAAAGGAAGCGGCTCTATTGGGAAAGAAGGTCATGGTCCTGGACTATGTCGTGCCCACACCCAAAGGAACGTCCTGGGGTCTTGGTGGAA]
[+] EMBL BU808114             [                                      AGTTGCCTTCTAGTGTTTTCTTCTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCC TTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGTGATTGGGGGAGGATCTGGAGGTCTTGCTTGCTCAAAGGAAGCGGCTCTATTGGGAAAGAAGGTCATGGTCCTGGACTATGTCGTGCCCACACCCAAAGGAACGTCCTGGGGTCTT       ]
[+] EMBL CA591396             [                                                                AAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTACCCC TTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTC                                                                                                                               ]
[+] EMBL FR0058763            [                                                                                                               GGCTTTTACCCC TTCTAA GGGCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAAATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTTATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTC GAGATGACTGGGCAGAAAAGTGTTCCTAATGTCTTCATCAACAAGACCCACGTCGGTGGCTGGGACAAAACCCTGCAGGCTCATAAAGACGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGTGATTGGGGG                                                                                                                 ]




>consensus_2538#0
GGGGTGGGTAGATTAGGTGCCGACACTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTT
CTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTAC
CCCTTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAA
ATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTT
ATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTC
AAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAG
GATGGAACCAACTACCAGGAGATGCTGCTCGAGATGACTGGGCAGAAAAGTGTTCCTAAT
GTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGAC
GGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGTG
ATTGGGGGAGGATCTGGAGGTCTTGCTTGCTCAAAGGAAGCGGCTCTATTGGGAAAGAAG
GTCATGGTCCTGGACTATGTCGTGCCCACACCCAAAGGAACGTCCTGGGGTCTTGGTGGA
A

consensusID : consensus_2538#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence 
                              [TTTCTTTTGCATGCAGATTTGATGTGAATTATTCATGGCACCAATGTCTGTGTGTTGTCAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGNGGGGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTCGAGATGACTGGGCAGAAAAGTGTTCCTAAATGTCTTCATCAACAAGACCCACGGCGGTGGTTGTGACAAAAACCCTTG]

[+] EMBL FR0058947            [TTTCTTTTGCATGCAGATTTGATGTGAATTATTCATGGCACCAATGTCTGTGTGTTGTCAGGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGNGGGGTTGGATCTGATAGAGGATGGAACCAACTACCAGGAGATGCTGCTCGAGATGACTGGGCAGAAAAGTGTTCCTAAATGTCTTCATCAACAAGACCCACGGCGGTGGTTGTGACAAAAACCCTTG]




>consensus_2538#1
TTTCTTTTGCATGCAGATTTGATGTGAATTATTCATGGCACCAATGTCTGTGTGTTGTCA
GGTCAAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGNGGGGTTGGATCTGAT
AGAGGATGGAACCAACTACCAGGAGATGCTGCTCGAGATGACTGGGCAGAAAAGTGTTCC
TAAATGTCTTCATCAACAAGACCCACGGCGGTGGTTGTGACAAAAACCCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2538#0      GGGGTGGGTAGATTAGGTGCCGACACTGGACGCTGACAAGTTGCCTTCTAGTGTTTTCTT 60
consensus_2538#1      ------------------------------------------------------------
                                                                                  

consensus_2538#0      CTAGAAAGCTCTTGACACACTCGTTAAAAGAGCGTTGCTGTGGCGTCAGCGGGCTTTTAC 120
consensus_2538#1      ------------------------------------------------------------
                                                                                  

consensus_2538#0      CCCTTCTAATCACCCATCTTTCGACGCATGCCTCTGTAGGCAGGTGGAGTTATCTTCAAA 180
consensus_2538#1      ------------------------------------------------------------
                                                                                  

consensus_2538#0      ATGCCTCCCATCGAAAACGAATCCGGGAAAAATGATCTCAAATCTCGAATACAGCAACTT 240
consensus_2538#1      ------------------------------------------------------TTTCTT 6
                                                                               ***

consensus_2538#0      ATCGACTCCAACCAAGTGATGGTTTTCAGTAAAAGCTACTGTCCATACTGCGTGAAGGTC 300
consensus_2538#1      TTGCATGCAGATTTGATGTGAATTATTCATGGCA-CCAATGTCTGTGTGTTGTCA-GGTC 64
                       *  *  *  *     **    ** *   *   * * * ****  *     ** * ****

consensus_2538#0      AAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGTGGAGTTGGATCTGATAGAG 360
consensus_2538#1      AAAGACTTGTTCAAAGAGCTGCAGGTGGAGTGTAACGTGGNGGGGTTGGATCTGATAGAG 124
                      **************************************** ** ****************

consensus_2538#0      GATGGAACCAACTACCAGGAGATGCTGCTCGAGATGACTGGGCAGAAAAGTGTTCCTAA- 419
consensus_2538#1      GATGGAACCAACTACCAGGAGATGCTGCTCGAGATGACTGGGCAGAAAAGTGTTCCTAAA 184
                      *********************************************************** 

consensus_2538#0      TGTCTTCATCAACAAGACCCACGTCGGTGGCTGTGACAAAACCCTGCAGGCTCATAAAGA 479
consensus_2538#1      TGTCTTCATCAACAAGACCCACGGCGGTGGTTGTGACAAAAACCCTTG------------ 232
                      *********************** ****** ********** **                

consensus_2538#0      CGGCAGCCTGCAGCAGTTGCTAAACGGACAGAATGAATCCTATGACTATGATCTCATTGT 539
consensus_2538#1      ------------------------------------------------------------
                                                                                  

consensus_2538#0      GATTGGGGGAGGATCTGGAGGTCTTGCTTGCTCAAAGGAAGCGGCTCTATTGGGAAAGAA 599
consensus_2538#1      ------------------------------------------------------------
                                                                                  

consensus_2538#0      GGTCATGGTCCTGGACTATGTCGTGCCCACACCCAAAGGAACGTCCTGGGGTCTTGGTGG 659
consensus_2538#1      ------------------------------------------------------------
                                                                                  

consensus_2538#0      AA 661
consensus_2538#1      --


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)