Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 2546 cluster # 2546       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2546#0 length = 829 sequences # 4  
consensus_2546#1 length = 730 sequences # 3  

consensusID : consensus_2546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 829
fasta sequence
                              [GCCCTTAAAGTCGATTTTCAGCCCAGATATCAAAATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGTTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGTGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACAGGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGATGAGGAAACAGCCCGCATCAAGCAGGAGCGTCTGGATGCCTACGCTGCCAAGAAGTCCAAGAAACCTGCCCTCATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGACGATGAGACGGACATGTCAATGCTGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTGTGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTGTGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGAGGACTTTGTCCAGAGTGTGGATGTCGCTGCCTTCAATAAGATCTAAAATCCTGACAGATCCACCAGTGTTGCTGCTGCTCCAGATTTGCATTAATAAAATGTCAGGTTTTGACAAAAA]

[+] EMBL CA844665             [GCCCTTAAAGTCGATTTTCAGCCCAGATATCAACATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGTTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGTGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACAGGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGATGAGGACACAGCCCGCATCAAGCAGGAGCGTCTGGATGCCTACGCTGCCAAGAAGTCCAAGAAACCTGCCCTCATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGACGATGAGACGGACATGTCAATGCTGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTGTGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTGTGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGAGGACTTTGTCCAGAGTGTGGATGTCGCT                                                                                          ]
[+] EMBL FR0057248            [                TTCAGCCCAGATATCAAAATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGTTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGTGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGGAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCATGGTCGCTCCAGTCCAGGCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA845273             [                                                                                                                                                                                                                       GCCTGCACAAAGTGGTGGAGAACATGAA CCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACAGGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGATGAG  AACAGCCCGCATCAAGCAGGAGCGTCTGTATGCCTACGCTGCCAAGAAGTCCAAGAAACCTGCCCTCATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGAC                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA330539             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTGTGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTGTGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGAGGACTTTGTCCAGAGTGTGGATGTCGCTGCCTTCAATAAGATCTAAAATCCTGACAGATCCACCAGTGTTGCTGCTGCTCCAGATTTGCATTAATAAAATGTCAGGTTTTGACAAAAA]


>consensus_2546#0 GCCCTTAAAGTCGATTTTCAGCCCAGATATCAAAATGAGTGGACTGCAGTGCCTTGCCTC AGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGG AGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGT TTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGTGGAGAACAT GAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTACTAA AGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACAGGTGGC AAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGATGAGGA AACAGCCCGCATCAAGCAGGAGCGTCTGGATGCCTACGCTGCCAAGAAGTCCAAGAAACC TGCCCTCATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGACGATGAGACGGA CATGTCAATGCTGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTGTGGGGCGC CTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTGTGTGGTTGA AGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGAGGACTTTGT CCAGAGTGTGGATGTCGCTGCCTTCAATAAGATCTAAAATCCTGACAGATCCACCAGTGT TGCTGCTGCTCCAGATTTGCATTAATAAAATGTCAGGTTTTGACAAAAA



consensusID : consensus_2546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 730
fasta sequence
                              [CCACCGCAGTGCCTTTGAGCAGGCAGAGAGCACTGACCAATGCTGGGCTCGGTCTAATAGCAATGGAGGGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGCTGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTACCCACCATCAAAGCATTAGAGGCCGAAATCGTACCTCCTCTGATACGGAGCCCAGGGCCAAGAGCAGCAAAACACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTGGACTCTGAGGGACAATATCAACATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGGTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAAGGAGCCAAACGGCCCTGCCCCACAGCAGCAACAGGTGAAAACGGCCACGCATCAGGCCAAAGGGCGCCATCAGAAACGACAGCATAGAAACTCTTCCTCACATGGGGATCAAGAGCTGGGTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGGGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGGTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAAACAGGGGGAAACGGTGGCGACGACGACCA]

[+] EMBL FR0063436            [CCACCGCAGTGCCTTTGAGCAGGCAGAGAGCACTGACCAATGCTGGGCTCGGTCTAATAGCAATGAAGGGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGCTGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTACCCACCATCAAAGCATTAGAGGCCGAAATCGTACCTCCTCTGATACGGAGCCCAGGGCCAAGAGCAGCAAAACACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTGGACTCTGAGGGACAATATCAACATGAGGGGGCTGCAGTGCCTTGCCTCAGAGAACGGATTGGTCGATAAACACCGCTTTGATGAAACAGAAAAACGCTTTTACGAAAGGACCAA                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL FR0063452            [                                     CAATGCTGGGCTCGGTCTAATAGCAATGGAGGGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGCTGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTACCCACCATCAAAGCATTAGAGGCCGAAATCGTACCTCCTCTGATACGGAGCCCAGGGCCAAGAGCAGCAAAACACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTGGACTCTGAGGGACAATATCAACATGAGTGGACTGCAGGGCCTTGCCTCAGAGAACGTATGGGTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAAGGAGCCCAACGGCCCTGCCCCACAGC                                                                                                                                                                                                                                                                                                       ]
[+] EMBL FR0062747            [                                                                                                                                                                                                                                                                                                                              TATCAACATGAGTGGACTGCAGTGCCTTGCCTCANANAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCC AACGGCCCTGCCCCACAGCAGCAACAGGTGAAAACGGCCACGCATCAGGCCAAAGGGCGCCATCAGAAACGACAGCATAGAAACTCTTCCTCACATGGGGATCAAGAGCTGGGTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGGGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGGTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAAACAGGGGGAAACGGTGGCGACGACGACCA]


>consensus_2546#1 CCACCGCAGTGCCTTTGAGCAGGCAGAGAGCACTGACCAATGCTGGGCTCGGTCTAATAG CAATGGAGGGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCA GTCTGGGCTGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATC ATCTGGTACCCACCATCAAAGCATTAGAGGCCGAAATCGTACCTCCTCTGATACGGAGCC CAGGGCCAAGAGCAGCAAAACACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAG CTGGACTCTGAGGGACAATATCAACATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGT ATGGGTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAAGGAGCCAAACG GCCCTGCCCCACAGCAGCAACAGGTGAAAACGGCCACGCATCAGGCCAAAGGGCGCCATC AGAAACGACAGCATAGAAACTCTTCCTCACATGGGGATCAAGAGCTGGGTTCACGAATGA AGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGGGGAGAACATGAAGGCTGCAC TACAGAAACTGGAGTCCAGAGTGGCTGGTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCC CATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAAACAGGGGGAAACGGTGGCG ACGACGACCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2546#0      GCCCTTAAAGTCGATTTTCAGCCCAGATATCAAAATGAGTGGACTGCAGTGCCTTGCCTC 60
consensus_2546#1      ---------------------------------------------CCACCGCAGTGCCTT 15
                                                                    **  **  ***** 

consensus_2546#0      AGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGG 120
consensus_2546#1      TGAGCAGGCAGAGAGCACTGACCAATGCTGGGCTCGGTCTAATAG-------CAATGGAG 68
                       *** * * *  *  *  * * **  ***  * *    *  * *         *   * *

consensus_2546#0      AGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGT 180
consensus_2546#1      GGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGC 128
                       **   *  *    ** *  ***   ** * **      ** * **   * **    ** 

consensus_2546#0      TTCACGAATGAAGAGCCTGGAACTGGAGAA---CCAGAGCCTGCACAAAGTGGTGGAGAA 237
consensus_2546#1      TGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTA 188
                      *   *    *         ****  * **    **   **   **  ** *  *   * *

consensus_2546#0      CATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTA- 296
consensus_2546#1      CCCACCATCAAAGCATTAGAGGCCGAAATC----GTACCTCCTCTGATACGGAGCCCAGG 244
                      *       *    *   ***  * * * **    **  **  * **  *  *   **   

consensus_2546#0      --CTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACA 354
consensus_2546#1      GCCAAGAGCAGCAAAAC-ACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTG 303
                        * * *** **    * *    ** **        ** **   * *   * *  *    

consensus_2546#0      GGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGA 414
consensus_2546#1      GACTCTGAGGGACAATATCAACATGAGTGGACTGCAGTGCCTTGCCTCAGA--GAACGTA 361
                      *      *  *   *   * **     **   *  * *   *** *   **   *  * *

consensus_2546#0      TGAGGAAACAGCCCGCATCAAGCAGGAGCGTCTGGATGCCTACGCTGCCAAGAAGTCCAA 474
consensus_2546#1      TGGGTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTT---TTACGAAGGAGCCAAA 418
                      ** *   * *  *  *     *  * ***      * ** *    * * *** ** * **

consensus_2546#0      GAAACCTGCCCT-CATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGACGATG 533
consensus_2546#1      CGGCCCTGCCCCACAGCAGCAACAGGTGAAAACGGCCACGCATCAGGCCAAAGGGCGCCA 478
                          *******  **    ***    *  *  * **      * * ***   ** **   

consensus_2546#0      AGACGGACATGTCAATGCTGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTG- 592
consensus_2546#1      T--CAGAAACGACAGCATAGAAACTCTTCCTCACATGGGGATCAAGAGCTGGGTTCACGA 536
                         * ** * * **     * *    * * *    * **     *  * **** **  * 

consensus_2546#0      -TGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTG 651
consensus_2546#1      ATGAAGAGCCTG-GAACTGGAGAACCAGAGCCTGCACAAAGTGGGGGAGAACATGAAGGC 595
                       **  * ****   ****** *       **     **    *  *  * * ** **   

consensus_2546#0      TGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGA 711
consensus_2546#1      TGCACTACAGAAACTGGAGTCCAGAGTGGCTGGTTTGGAAAAGGCTCCTACTAAAGCGG- 654
                      **   *  *  *     *     *   **      ****  ***     ** ***   * 

consensus_2546#0      GGACTTTGTCCAGAGTGTGGATGTCGCTGCCTTCAATAAGATCTAAAATCCTGACAGATC 771
consensus_2546#1      -----CTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAAACAGGGGG 709
                            *****   ***   * * **** *  ** *         *          *   

consensus_2546#0      CACCAGTGTTGCTGCTGCTCCAGATTTGCATTAATAAAATGTCAGGTTTTGACAAAAA 829
consensus_2546#1      AAACGGTGGCGACGACGACCA------------------------------------- 730
                       * * ***  *  *  *  *                                      




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)