These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 829 fasta sequence [GCCCTTAAAGTCGATTTTCAGCCCAGATATCAAAATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGTTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGTGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACAGGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGATGAGGAAACAGCCCGCATCAAGCAGGAGCGTCTGGATGCCTACGCTGCCAAGAAGTCCAAGAAACCTGCCCTCATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGACGATGAGACGGACATGTCAATGCTGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTGTGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTGTGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGAGGACTTTGTCCAGAGTGTGGATGTCGCTGCCTTCAATAAGATCTAAAATCCTGACAGATCCACCAGTGTTGCTGCTGCTCCAGATTTGCATTAATAAAATGTCAGGTTTTGACAAAAA] [+] EMBL CA844665 [GCCCTTAAAGTCGATTTTCAGCCCAGATATCAACATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGTTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGTGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACAGGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGATGAGGACACAGCCCGCATCAAGCAGGAGCGTCTGGATGCCTACGCTGCCAAGAAGTCCAAGAAACCTGCCCTCATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGACGATGAGACGGACATGTCAATGCTGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTGTGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTGTGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGAGGACTTTGTCCAGAGTGTGGATGTCGCT ] [+] EMBL FR0057248 [ TTCAGCCCAGATATCAAAATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGTTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGTGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGGAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCATGGTCGCTCCAGTCCAGGCCGC ] [+] EMBL CA845273 [ GCCTGCACAAAGTGGTGGAGAACATGAA CCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACAGGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGATGAG AACAGCCCGCATCAAGCAGGAGCGTCTGTATGCCTACGCTGCCAAGAAGTCCAAGAAACCTGCCCTCATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGAC ] [+] EMBL CA330539 [ TGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTGTGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTGTGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGAGGACTTTGTCCAGAGTGTGGATGTCGCTGCCTTCAATAAGATCTAAAATCCTGACAGATCCACCAGTGTTGCTGCTGCTCCAGATTTGCATTAATAAAATGTCAGGTTTTGACAAAAA] consensusID : consensus_2546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 730 fasta sequence [CCACCGCAGTGCCTTTGAGCAGGCAGAGAGCACTGACCAATGCTGGGCTCGGTCTAATAGCAATGGAGGGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGCTGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTACCCACCATCAAAGCATTAGAGGCCGAAATCGTACCTCCTCTGATACGGAGCCCAGGGCCAAGAGCAGCAAAACACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTGGACTCTGAGGGACAATATCAACATGAGTGGACTGCAGTGCCTTGCCTCAGAGAACGTATGGGTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAAGGAGCCAAACGGCCCTGCCCCACAGCAGCAACAGGTGAAAACGGCCACGCATCAGGCCAAAGGGCGCCATCAGAAACGACAGCATAGAAACTCTTCCTCACATGGGGATCAAGAGCTGGGTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGGGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGGTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAAACAGGGGGAAACGGTGGCGACGACGACCA] [+] EMBL FR0063436 [CCACCGCAGTGCCTTTGAGCAGGCAGAGAGCACTGACCAATGCTGGGCTCGGTCTAATAGCAATGAAGGGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGCTGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTACCCACCATCAAAGCATTAGAGGCCGAAATCGTACCTCCTCTGATACGGAGCCCAGGGCCAAGAGCAGCAAAACACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTGGACTCTGAGGGACAATATCAACATGAGGGGGCTGCAGTGCCTTGCCTCAGAGAACGGATTGGTCGATAAACACCGCTTTGATGAAACAGAAAAACGCTTTTACGAAAGGACCAA ] [+] EMBL FR0063452 [ CAATGCTGGGCTCGGTCTAATAGCAATGGAGGGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGCTGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTACCCACCATCAAAGCATTAGAGGCCGAAATCGTACCTCCTCTGATACGGAGCCCAGGGCCAAGAGCAGCAAAACACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTGGACTCTGAGGGACAATATCAACATGAGTGGACTGCAGGGCCTTGCCTCAGAGAACGTATGGGTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAAGGAGCCCAACGGCCCTGCCCCACAGC ] [+] EMBL FR0062747 [ TATCAACATGAGTGGACTGCAGTGCCTTGCCTCANANAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGGAGCC AACGGCCCTGCCCCACAGCAGCAACAGGTGAAAACGGCCACGCATCAGGCCAAAGGGCGCCATCAGAAACGACAGCATAGAAACTCTTCCTCACATGGGGATCAAGAGCTGGGTTCACGAATGAAGAGCCTGGAACTGGAGAACCAGAGCCTGCACAAAGTGGGGGAGAACATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGGTTTGGAAAAGGCTCCTACTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAAACAGGGGGAAACGGTGGCGACGACGACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2546#0 GCCCTTAAAGTCGATTTTCAGCCCAGATATCAAAATGAGTGGACTGCAGTGCCTTGCCTC 60 consensus_2546#1 ---------------------------------------------CCACCGCAGTGCCTT 15 ** ** ***** consensus_2546#0 AGAGAACGTATGGTTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTTTTACGAGGG 120 consensus_2546#1 TGAGCAGGCAGAGAGCACTGACCAATGCTGGGCTCGGTCTAATAG-------CAATGGAG 68 *** * * * * * * * ** *** * * * * * * * * consensus_2546#0 AGCCAACGGCCCTGCCCCACAGCAGCAACAGTCTTCCTCACATGGGGATCAAGAGCTGGT 180 consensus_2546#1 GGCTGTCATCTTCTCCACGGAGCCCAAATACTCGGAGCTACTTTGGCTCCCAGTCTGGGC 128 ** * * ** * *** ** * ** ** * ** * ** ** consensus_2546#0 TTCACGAATGAAGAGCCTGGAACTGGAGAA---CCAGAGCCTGCACAAAGTGGTGGAGAA 237 consensus_2546#1 TGTCCCGTAGTCTGCATCAGAACAAGGGACACCCCGCTGCTCCCATGAAATCATCTGGTA 188 * * * **** * ** ** ** ** ** * * * * consensus_2546#0 CATGAAGGCTGCACTACAGAAACTGGAGTCCAGAGTGGCTGTTTTGGAAAAGGCTCCTA- 296 consensus_2546#1 CCCACCATCAAAGCATTAGAGGCCGAAATC----GTACCTCCTCTGATACGGAGCCCAGG 244 * * * *** * * * ** ** ** * ** * * ** consensus_2546#0 --CTAAAGCGGCTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAACA 354 consensus_2546#1 GCCAAGAGCAGCAAAAC-ACCCACCCAGAGGAAGAGAGGCCTCTCTGAGACGGAAAGCTG 303 * * *** ** * * ** ** ** ** * * * * * consensus_2546#0 GGTGGCAAACGGTGACGACGACGACGATGACTTAGATTTGTTTGGCAGCGATGAAGAGGA 414 consensus_2546#1 GACTCTGAGGGACAATATCAACATGAGTGGACTGCAGTGCCTTGCCTCAGA--GAACGTA 361 * * * * * ** ** * * * *** * ** * * * consensus_2546#0 TGAGGAAACAGCCCGCATCAAGCAGGAGCGTCTGGATGCCTACGCTGCCAAGAAGTCCAA 474 consensus_2546#1 TGGGTCGATAAACACCGCTTTGATGAAGCAGAAAAACGCTT---TTACGAAGGAGCCAAA 418 ** * * * * * * * *** * ** * * * *** ** * ** consensus_2546#0 GAAACCTGCCCT-CATTGCCAAATCATCTATCCTGCTGGATGTGAAGCCTTGGGACGATG 533 consensus_2546#1 CGGCCCTGCCCCACAGCAGCAACAGGTGAAAACGGCCACGCATCAGGCCAAAGGGCGCCA 478 ******* ** *** * * * ** * * *** ** ** consensus_2546#0 AGACGGACATGTCAATGCTGGAGAAGTGCGTGCGCTCGGTGCAGATGGATGGGCTCCTG- 592 consensus_2546#1 T--CAGAAACGACAGCATAGAAACTCTTCCTCACATGGGGATCAAGAGCTGGGTTCACGA 536 * ** * * ** * * * * * * ** * * **** ** * consensus_2546#0 -TGGGGCGCCTCCAAACTGGTGCCAGTTGGCTACGGCATCAAGAAGCTGCAGATCAACTG 651 consensus_2546#1 ATGAAGAGCCTG-GAACTGGAGAACCAGAGCCTGCACAAAGTGGGGGAGAACATGAAGGC 595 ** * **** ****** * ** ** * * * * ** ** consensus_2546#0 TGTGGTTGAAGATGACAAAGTTGGCACGGACATCCTGGAGGAGGAGATCACCAAATTCGA 711 consensus_2546#1 TGCACTACAGAAACTGGAGTCCAGAGTGGCTGGTTTGGAAAAGGCTCCTACTAAAGCGG- 654 ** * * * * * ** **** *** ** *** * consensus_2546#0 GGACTTTGTCCAGAGTGTGGATGTCGCTGCCTTCAATAAGATCTAAAATCCTGACAGATC 771 consensus_2546#1 -----CTGTCCCATGTGCCAAGGCCGCTCCAGTCCAGGCCGCACCAGTGAAAACAGGGGG 709 ***** *** * * **** * ** * * * consensus_2546#0 CACCAGTGTTGCTGCTGCTCCAGATTTGCATTAATAAAATGTCAGGTTTTGACAAAAA 829 consensus_2546#1 AAACGGTGGCGACGACGACCA------------------------------------- 730 * * *** * * * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |