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Takifugu rubripes
cluster # 2555 cluster # 2555       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2555#0 length = 966 sequences # 6  
consensus_2555#1 length = 441 sequences # 1  

consensusID : consensus_2555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 966
fasta sequence
                              [TGCCTCTGTTCTGGAGATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCATTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAGGCAGCACTATCGTATTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAGTGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCAGTACGAGGGTCCCCACATGCACTCCTCTGCTCCCAGCAGCCTGGGCTTCGATTCAGGACAGGCTCCTACTTTCATGCACACGAAGTCCGGGTCCATCATCTGCAGGAGCAGCTGGACGAGCACCGGCTCGTATTGTTCCACCAGCTGATCACACTCAGTCTGCATGGAGTCTGGCAGGAAGCTGCAGACTTTCCTCACAGCTTCCTCAATCTGGGATTCTGTAGAATTCTTCTCCAGGATGCTGTCGATGTACGTGACAGCCATCTTACAAACCTCACAGTAGCCACCAACATTGAAGCGCGTCCTGTCCAGGGCAGCAACA]

[-] EMBL FR0056673            [TGCCTCTGTTCTGGAGATGGGTCAGTTTTATTGCTGAAAAACACTTGAATCACATCAATCTGAACATTCTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCGACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA332597             [      TTTTTTGGAGAAGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA332094             [              AGATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA333008             [                ATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA329601             [                  GGGTCAGTTTTATTGTTGATAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCGTTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAAGCAGCACTATCGTATTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAGTGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCA                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL FR0057696            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTAATTTACATGCGTTGCATTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAGGCAGCACTATCGTATTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAGTGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCAGTACGAGGGTCCCCACATGCACTCCTCTGCTCCCAGCAGCCTGGGCTTCGATTCAGGACAGGCTCCTACTTTCATGCACACGAAGTCCGGGTCCATCATCTGCAGGAGCAGCTGGACGAGCACCGGCTCGTATTGTTCCACCAGCTGATCACACTCAGTCTGCATGGAGTCTGGCAGGAAGCTGCAGACTTTCCTCACAGCTTCCTCAATCTGGGATTCTGTAGAATTCTTCTCCAGGATGCTGTCGATGTACGTGACAGCCATCTTACAAACCTCACAGTAGCCACCAACATTGAAGCGCGTCCTGTCCAGGGCAGCAACA]


>consensus_2555#0 TGCCTCTGTTCTGGAGATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATT TGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTG AGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCT ACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTC GTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCG TGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATC TGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCC AGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCATTA GCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAGGCAGCACTATCGTATTC ACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAGTGT TCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCAGTACGAGGGTCCCCAC ATGCACTCCTCTGCTCCCAGCAGCCTGGGCTTCGATTCAGGACAGGCTCCTACTTTCATG CACACGAAGTCCGGGTCCATCATCTGCAGGAGCAGCTGGACGAGCACCGGCTCGTATTGT TCCACCAGCTGATCACACTCAGTCTGCATGGAGTCTGGCAGGAAGCTGCAGACTTTCCTC ACAGCTTCCTCAATCTGGGATTCTGTAGAATTCTTCTCCAGGATGCTGTCGATGTACGTG ACAGCCATCTTACAAACCTCACAGTAGCCACCAACATTGAAGCGCGTCCTGTCCAGGGCA GCAACA



consensusID : consensus_2555#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence
                              [GAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGCACAGCGCAACGGCGTTCAGTTTTCAGGAAAATCCCACTTCACAAAGGTCCAGATTAATTGACCGTGCGTGGCGGCGATTGAGGCGAATCATACATAACGACCACGTTTCACCTGTTGGCTGCGTAACTGCGCTTGATAACCCACCAA]

[-] EMBL CA332807             [GAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGCACAGCGCAACGGCGTTCAGTTTTCAGGAAAATCCCACTTCACAAAGGTCCAGATTAATTGACCGTGCGTGGCGGCGATTGAGGCGAATCATACATAACGACCACGTTTCACCTGTTGGCTGCGTAACTGCGCTTGATAACCCACCAA]


>consensus_2555#1 GAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGA AATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATC AGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCG GCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCC TTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGCACAGCG CAACGGCGTTCAGTTTTCAGGAAAATCCCACTTCACAAAGGTCCAGATTAATTGACCGTG CGTGGCGGCGATTGAGGCGAATCATACATAACGACCACGTTTCACCTGTTGGCTGCGTAA CTGCGCTTGATAACCCACCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2555#0      TGCCTCTGTTCTGGAGATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATT 60
consensus_2555#1      -----------------------------------GAAAAACACTTGAATCACATCAATT 25
                                                         *************************

consensus_2555#0      TGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTG 120
consensus_2555#1      TGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTG 85
                      ************************************************************

consensus_2555#0      AGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCT 180
consensus_2555#1      AGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCT 145
                      ************************************************************

consensus_2555#0      ACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTC 240
consensus_2555#1      ACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTC 205
                      ************************************************************

consensus_2555#0      GTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCG 300
consensus_2555#1      GTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCG 265
                      ************************************************************

consensus_2555#0      TGTCATCATACATCTCTTTAACACCCAGTAAGAAACAA--ACCCAGAAGGTTAAAAAAAA 358
consensus_2555#1      TGTCATCATACATCTCTTTAACACCCAGCACAGCGCAACGGCGTTCAGTTTTCAGGAAAA 325
                      **************************** *     ***   *    *   ** *  ****

consensus_2555#0      TCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAA-CA 417
consensus_2555#1      TCC-CACTTCACAAAGGTCCAGATTAATTGACCGTGCGTGGCGGCGATTGAGGCGAATCA 384
                      **  **   *   **  * *** ** **   *         *  *       * *** **

consensus_2555#0      TCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCA 477
consensus_2555#1      TACATAACGACCACGTTTCACCTGTTGGCTGCGTAACTGCGCTTGATAACCCACCAA--- 441
                      * **   *    **  *  * * *  * *  *  *  *  * *   * **   *      

consensus_2555#0      TTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAGGCAGCACTATCGTA 537
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      TTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAG 597
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      TGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCAGTACGAGGGTCCC 657
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      CACATGCACTCCTCTGCTCCCAGCAGCCTGGGCTTCGATTCAGGACAGGCTCCTACTTTC 717
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      ATGCACACGAAGTCCGGGTCCATCATCTGCAGGAGCAGCTGGACGAGCACCGGCTCGTAT 777
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      TGTTCCACCAGCTGATCACACTCAGTCTGCATGGAGTCTGGCAGGAAGCTGCAGACTTTC 837
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      CTCACAGCTTCCTCAATCTGGGATTCTGTAGAATTCTTCTCCAGGATGCTGTCGATGTAC 897
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      GTGACAGCCATCTTACAAACCTCACAGTAGCCACCAACATTGAAGCGCGTCCTGTCCAGG 957
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      GCAGCAACA 966
consensus_2555#1      ---------
                               




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)