These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 966 fasta sequence [TGCCTCTGTTCTGGAGATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCATTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAGGCAGCACTATCGTATTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAGTGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCAGTACGAGGGTCCCCACATGCACTCCTCTGCTCCCAGCAGCCTGGGCTTCGATTCAGGACAGGCTCCTACTTTCATGCACACGAAGTCCGGGTCCATCATCTGCAGGAGCAGCTGGACGAGCACCGGCTCGTATTGTTCCACCAGCTGATCACACTCAGTCTGCATGGAGTCTGGCAGGAAGCTGCAGACTTTCCTCACAGCTTCCTCAATCTGGGATTCTGTAGAATTCTTCTCCAGGATGCTGTCGATGTACGTGACAGCCATCTTACAAACCTCACAGTAGCCACCAACATTGAAGCGCGTCCTGTCCAGGGCAGCAACA] [-] EMBL FR0056673 [TGCCTCTGTTCTGGAGATGGGTCAGTTTTATTGCTGAAAAACACTTGAATCACATCAATCTGAACATTCTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCGACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGG ] [+] EMBL CA332597 [ TTTTTTGGAGAAGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCAT ] [+] EMBL CA332094 [ AGATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATG ] [+] EMBL CA333008 [ ATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACAT ] [+] EMBL CA329601 [ GGGTCAGTTTTATTGTTGATAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCGTTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAAGCAGCACTATCGTATTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAGTGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCA ] [-] EMBL FR0057696 [ TTAATTTACATGCGTTGCATTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAGGCAGCACTATCGTATTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAGTGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCAGTACGAGGGTCCCCACATGCACTCCTCTGCTCCCAGCAGCCTGGGCTTCGATTCAGGACAGGCTCCTACTTTCATGCACACGAAGTCCGGGTCCATCATCTGCAGGAGCAGCTGGACGAGCACCGGCTCGTATTGTTCCACCAGCTGATCACACTCAGTCTGCATGGAGTCTGGCAGGAAGCTGCAGACTTTCCTCACAGCTTCCTCAATCTGGGATTCTGTAGAATTCTTCTCCAGGATGCTGTCGATGTACGTGACAGCCATCTTACAAACCTCACAGTAGCCACCAACATTGAAGCGCGTCCTGTCCAGGGCAGCAACA] consensusID : consensus_2555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [GAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGCACAGCGCAACGGCGTTCAGTTTTCAGGAAAATCCCACTTCACAAAGGTCCAGATTAATTGACCGTGCGTGGCGGCGATTGAGGCGAATCATACATAACGACCACGTTTCACCTGTTGGCTGCGTAACTGCGCTTGATAACCCACCAA] [-] EMBL CA332807 [GAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGCACAGCGCAACGGCGTTCAGTTTTCAGGAAAATCCCACTTCACAAAGGTCCAGATTAATTGACCGTGCGTGGCGGCGATTGAGGCGAATCATACATAACGACCACGTTTCACCTGTTGGCTGCGTAACTGCGCTTGATAACCCACCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2555#0 TGCCTCTGTTCTGGAGATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATT 60 consensus_2555#1 -----------------------------------GAAAAACACTTGAATCACATCAATT 25 ************************* consensus_2555#0 TGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTG 120 consensus_2555#1 TGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTG 85 ************************************************************ consensus_2555#0 AGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCT 180 consensus_2555#1 AGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCT 145 ************************************************************ consensus_2555#0 ACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTC 240 consensus_2555#1 ACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTC 205 ************************************************************ consensus_2555#0 GTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCG 300 consensus_2555#1 GTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCG 265 ************************************************************ consensus_2555#0 TGTCATCATACATCTCTTTAACACCCAGTAAGAAACAA--ACCCAGAAGGTTAAAAAAAA 358 consensus_2555#1 TGTCATCATACATCTCTTTAACACCCAGCACAGCGCAACGGCGTTCAGTTTTCAGGAAAA 325 **************************** * *** * * ** * **** consensus_2555#0 TCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAA-CA 417 consensus_2555#1 TCC-CACTTCACAAAGGTCCAGATTAATTGACCGTGCGTGGCGGCGATTGAGGCGAATCA 384 ** ** * ** * *** ** ** * * * * *** ** consensus_2555#0 TCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCA 477 consensus_2555#1 TACATAACGACCACGTTTCACCTGTTGGCTGCGTAACTGCGCTTGATAACCCACCAA--- 441 * ** * ** * * * * * * * * * * * * ** * consensus_2555#0 TTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAGGCAGCACTATCGTA 537 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 TTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAG 597 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 TGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCAGTACGAGGGTCCC 657 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 CACATGCACTCCTCTGCTCCCAGCAGCCTGGGCTTCGATTCAGGACAGGCTCCTACTTTC 717 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 ATGCACACGAAGTCCGGGTCCATCATCTGCAGGAGCAGCTGGACGAGCACCGGCTCGTAT 777 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 TGTTCCACCAGCTGATCACACTCAGTCTGCATGGAGTCTGGCAGGAAGCTGCAGACTTTC 837 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 CTCACAGCTTCCTCAATCTGGGATTCTGTAGAATTCTTCTCCAGGATGCTGTCGATGTAC 897 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 GTGACAGCCATCTTACAAACCTCACAGTAGCCACCAACATTGAAGCGCGTCCTGTCCAGG 957 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 GCAGCAACA 966 consensus_2555#1 --------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |