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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 966 fasta sequence
[TGCCTCTGTTCTGGAGATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCATTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAGGCAGCACTATCGTATTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAGTGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCAGTACGAGGGTCCCCACATGCACTCCTCTGCTCCCAGCAGCCTGGGCTTCGATTCAGGACAGGCTCCTACTTTCATGCACACGAAGTCCGGGTCCATCATCTGCAGGAGCAGCTGGACGAGCACCGGCTCGTATTGTTCCACCAGCTGATCACACTCAGTCTGCATGGAGTCTGGCAGGAAGCTGCAGACTTTCCTCACAGCTTCCTCAATCTGGGATTCTGTAGAATTCTTCTCCAGGATGCTGTCGATGTACGTGACAGCCATCTTACAAACCTCACAGTAGCCACCAACATTGAAGCGCGTCCTGTCCAGGGCAGCAACA]
[-] EMBL FR0056673 [TGCCTCTGTTCTGGAGATGGGTCAGTTTTATTGCTGAAAAACACTTGAATCACATCAATCTGAACATTCTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCGACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGG ]
[+] EMBL CA332597 [ TTTTTTGGAGAAGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCAT ]
[+] EMBL CA332094 [ AGATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATG ]
[+] EMBL CA333008 [ ATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACAT ]
[+] EMBL CA329601 [ GGGTCAGTTTTATTGTTGATAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGTAAGAAACAAACCCAGAAGGTTAAAAAAAATCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAACATCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCGTTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAAGCAGCACTATCGTATTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAGTGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCA ]
[-] EMBL FR0057696 [ TTAATTTACATGCGTTGCATTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAGGCAGCACTATCGTATTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAGTGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCAGTACGAGGGTCCCCACATGCACTCCTCTGCTCCCAGCAGCCTGGGCTTCGATTCAGGACAGGCTCCTACTTTCATGCACACGAAGTCCGGGTCCATCATCTGCAGGAGCAGCTGGACGAGCACCGGCTCGTATTGTTCCACCAGCTGATCACACTCAGTCTGCATGGAGTCTGGCAGGAAGCTGCAGACTTTCCTCACAGCTTCCTCAATCTGGGATTCTGTAGAATTCTTCTCCAGGATGCTGTCGATGTACGTGACAGCCATCTTACAAACCTCACAGTAGCCACCAACATTGAAGCGCGTCCTGTCCAGGGCAGCAACA]
consensusID : consensus_2555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[GAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGCACAGCGCAACGGCGTTCAGTTTTCAGGAAAATCCCACTTCACAAAGGTCCAGATTAATTGACCGTGCGTGGCGGCGATTGAGGCGAATCATACATAACGACCACGTTTCACCTGTTGGCTGCGTAACTGCGCTTGATAACCCACCAA]
[-] EMBL CA332807 [GAAAAACACTTGAATCACATCAATTTGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTGAGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCTACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTCGTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCGTGTCATCATACATCTCTTTAACACCCAGCACAGCGCAACGGCGTTCAGTTTTCAGGAAAATCCCACTTCACAAAGGTCCAGATTAATTGACCGTGCGTGGCGGCGATTGAGGCGAATCATACATAACGACCACGTTTCACCTGTTGGCTGCGTAACTGCGCTTGATAACCCACCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2555#0 TGCCTCTGTTCTGGAGATGGGTCAGTTTTATTGTTGAAAAACACTTGAATCACATCAATT 60
consensus_2555#1 -----------------------------------GAAAAACACTTGAATCACATCAATT 25
*************************
consensus_2555#0 TGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTG 120
consensus_2555#1 TGAACATTTTGTTCTGTATTAGGAAGTAATTTTGAAATGGCACAAGACATGCAAGCAGTG 85
************************************************************
consensus_2555#0 AGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCT 180
consensus_2555#1 AGATGGCAGGTGCACAGAATCAATACCCCAACATCAGCTCATTAACAAAAAGCATTTCCT 145
************************************************************
consensus_2555#0 ACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTC 240
consensus_2555#1 ACAAAACAAGTCGTAGCTAAACCTAATGCCAGCCGGCTGTATCACGCCGAGCCACCTCTC 205
************************************************************
consensus_2555#0 GTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCG 300
consensus_2555#1 GTTTGGAACGAGGAGTCACATCGCTGAAGGGGTCCTTCAGAACGTGGCCATCTGCTGCCG 265
************************************************************
consensus_2555#0 TGTCATCATACATCTCTTTAACACCCAGTAAGAAACAA--ACCCAGAAGGTTAAAAAAAA 358
consensus_2555#1 TGTCATCATACATCTCTTTAACACCCAGCACAGCGCAACGGCGTTCAGTTTTCAGGAAAA 325
**************************** * *** * * ** * ****
consensus_2555#0 TCTGCAAAGCCTGAAAATACAGCTTTATCACCAACATCCTCCCACCCCCACAGAGAA-CA 417
consensus_2555#1 TCC-CACTTCACAAAGGTCCAGATTAATTGACCGTGCGTGGCGGCGATTGAGGCGAATCA 384
** ** * ** * *** ** ** * * * * *** **
consensus_2555#0 TCCAGTCCCGGAACCATCAAGCCGCCGCCCTCAAATATCAGTTAATTTACATGCGTTGCA 477
consensus_2555#1 TACATAACGACCACGTTTCACCTGTTGGCTGCGTAACTGCGCTTGATAACCCACCAA--- 441
* ** * ** * * * * * * * * * * * * ** *
consensus_2555#0 TTAGCGGTTTTAAAACAACACGAGGACAAAGATTAAAAAGGGGAAGGCAGCACTATCGTA 537
consensus_2555#1 ------------------------------------------------------------
consensus_2555#0 TTCACTTTAATTTCCTACAGGTCACCCTTCTTCCTCTATACCCACACATGGCGCTTGCAG 597
consensus_2555#1 ------------------------------------------------------------
consensus_2555#0 TGTTCCACGGCGCTGCACAGAGCTGCAGTCTCCATGTTCTTGCACCAGTACGAGGGTCCC 657
consensus_2555#1 ------------------------------------------------------------
consensus_2555#0 CACATGCACTCCTCTGCTCCCAGCAGCCTGGGCTTCGATTCAGGACAGGCTCCTACTTTC 717
consensus_2555#1 ------------------------------------------------------------
consensus_2555#0 ATGCACACGAAGTCCGGGTCCATCATCTGCAGGAGCAGCTGGACGAGCACCGGCTCGTAT 777
consensus_2555#1 ------------------------------------------------------------
consensus_2555#0 TGTTCCACCAGCTGATCACACTCAGTCTGCATGGAGTCTGGCAGGAAGCTGCAGACTTTC 837
consensus_2555#1 ------------------------------------------------------------
consensus_2555#0 CTCACAGCTTCCTCAATCTGGGATTCTGTAGAATTCTTCTCCAGGATGCTGTCGATGTAC 897
consensus_2555#1 ------------------------------------------------------------
consensus_2555#0 GTGACAGCCATCTTACAAACCTCACAGTAGCCACCAACATTGAAGCGCGTCCTGTCCAGG 957
consensus_2555#1 ------------------------------------------------------------
consensus_2555#0 GCAGCAACA 966
consensus_2555#1 ---------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |