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Takifugu rubripes
cluster # 2558 cluster # 2558       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2558#0 length = 770 sequences # 3  
consensus_2558#1 length = 678 sequences # 5  

consensusID : consensus_2558#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 770
fasta sequence
                              [CCCCAGCCTTAATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCCAGCGTTGCCGCCGCTTCACCTGCGGCACAAGCAGAGGGTGCAGCTAAAGGAGTCAGGACAGAGAGCAGGGTTAAGATGAACCGCATGAGGCTGAGAATTGCC]

[+] EMBL FR0063864            [CCCCAGCCTTAATGTTATCCCATTCCCGTTGTCTCACCAGGAATTTCAGCCGGTCTCTGTCTGCCCTCCGCCA GGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAAATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA846237             [            TGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCCAGCGTTGCCGCCGCTTCACCTGCGGCACAAGCAGAGGGTGCAGCTAAAGGAGTCAGGACAGAGAGCAGGGTTAAGATGAACCGCATGAGGCTGAGAATTGCC]
[+] EMBL CA590494             [              TTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCA                                                                                                                                                                                                                                    ]


>consensus_2558#0 CCCCAGCCTTAATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGT CTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTA ACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAA TCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTG CCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCG TCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGT CTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGG GAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAA AAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCAC CACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCA GTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCA TCAAGCCCAGCGTTGCCGCCGCTTCACCTGCGGCACAAGCAGAGGGTGCAGCTAAAGGAG TCAGGACAGAGAGCAGGGTTAAGATGAACCGCATGAGGCTGAGAATTGCC



consensusID : consensus_2558#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 678
fasta sequence
                              [GCCTTTGAAGTTTCCCTTCCGTTTTCGGGCTGCTGTCACACAGCCATAATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCC]

[+] EMBL CA588132             [GCCTTTGAAGTTTCCCTTCCGTTTTCGGGCTGCTGTCACACAGCCATTATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCC]
[+] EMBL FR0062363            [                                             ATAATGTTATCCCATTCCCGGTGTCTCACCAGGTATTTCAGCCGTTCTCTGTCTGCCCTGCGCCAGTGGAATCAGGCGCTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGCTGGAGACACCGTCACTGAGGATGAGGGGGGGTGTGAAATTGAGACTGATAAGACATCAGGGCA                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BU806809             [                                              TAATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCATAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTC                                                                                                     ]
[+] EMBL BU806958             [                                                      TCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGT                ]
[+] EMBL FR0062389            [                                                                                TTTCAGCCG TCTCTGTCTGCCCTCCGCCA GGGAATCAGG GAGCGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGATAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGAGGGAGAAAGCTGCTGGAGACACCGTCACTGAGGATGAGGCGGTGTGCGAAATTGAGACTGATAAGAAATCAGTGCAGGTTCCGGCTCCTGCTGCTGGA                                                                                                                                                                                                                                                                           ]


>consensus_2558#1 GCCTTTGAAGTTTCCCTTCCGTTTTCGGGCTGCTGTCACACAGCCATAATGTTATCCCAT TCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAG GCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAAC ATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTT GCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAG GGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGT GAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAA GAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGA AAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCA GCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCC ATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCG GTATCAGCCATCAAGCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2558#0      -------------------------------------CCCCAGCCTTAATGTTATCCCAT 23
consensus_2558#1      GCCTTTGAAGTTTCCCTTCCGTTTTCGGGCTGCTGTCACACAGCCATAATGTTATCCCAT 60
                                                            * ***** **************

consensus_2558#0      TCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAG 83
consensus_2558#1      TCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAG 120
                      ************************************************************

consensus_2558#0      GCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAAC 143
consensus_2558#1      GCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAAC 180
                      ************************************************************

consensus_2558#0      ATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTT 203
consensus_2558#1      ATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTT 240
                      ************************************************************

consensus_2558#0      GCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAG 263
consensus_2558#1      GCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAG 300
                      ************************************************************

consensus_2558#0      GGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGT 323
consensus_2558#1      GGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGT 360
                      ************************************************************

consensus_2558#0      GAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAA 383
consensus_2558#1      GAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAA 420
                      ************************************************************

consensus_2558#0      GAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGA 443
consensus_2558#1      GAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGA 480
                      ************************************************************

consensus_2558#0      AAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCA 503
consensus_2558#1      AAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCA 540
                      ************************************************************

consensus_2558#0      GCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCA 563
consensus_2558#1      GCCCCACCACCACCTTCTGCTGCTGC---------------------------TTCTCCA 573
                      **************************                           *******

consensus_2558#0      CCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTG 623
consensus_2558#1      CCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTG 633
                      ************************************************************

consensus_2558#0      CCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCCAGCGTTGCCGCCGCT 683
consensus_2558#1      CCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCC--------------- 678
                      *********************************************               

consensus_2558#0      TCACCTGCGGCACAAGCAGAGGGTGCAGCTAAAGGAGTCAGGACAGAGAGCAGGGTTAAG 743
consensus_2558#1      ------------------------------------------------------------
                                                                                  

consensus_2558#0      ATGAACCGCATGAGGCTGAGAATTGCC 770
consensus_2558#1      ---------------------------
                                                 




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)