These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence [CCCCAGCCTTAATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCCAGCGTTGCCGCCGCTTCACCTGCGGCACAAGCAGAGGGTGCAGCTAAAGGAGTCAGGACAGAGAGCAGGGTTAAGATGAACCGCATGAGGCTGAGAATTGCC] [+] EMBL FR0063864 [CCCCAGCCTTAATGTTATCCCATTCCCGTTGTCTCACCAGGAATTTCAGCCGGTCTCTGTCTGCCCTCCGCCA GGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAAATGA ] [+] EMBL CA846237 [ TGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCCAGCGTTGCCGCCGCTTCACCTGCGGCACAAGCAGAGGGTGCAGCTAAAGGAGTCAGGACAGAGAGCAGGGTTAAGATGAACCGCATGAGGCTGAGAATTGCC] [+] EMBL CA590494 [ TTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCA ] consensusID : consensus_2558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 678 fasta sequence [GCCTTTGAAGTTTCCCTTCCGTTTTCGGGCTGCTGTCACACAGCCATAATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCC] [+] EMBL CA588132 [GCCTTTGAAGTTTCCCTTCCGTTTTCGGGCTGCTGTCACACAGCCATTATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCC] [+] EMBL FR0062363 [ ATAATGTTATCCCATTCCCGGTGTCTCACCAGGTATTTCAGCCGTTCTCTGTCTGCCCTGCGCCAGTGGAATCAGGCGCTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGCTGGAGACACCGTCACTGAGGATGAGGGGGGGTGTGAAATTGAGACTGATAAGACATCAGGGCA ] [+] EMBL BU806809 [ TAATGTTATCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCATAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTC ] [+] EMBL BU806958 [ TCCCATTCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAGGCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGTGAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAAGAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGAAAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCACCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTGCCAGCACATGCTATGGACACCAAACCGGT ] [+] EMBL FR0062389 [ TTTCAGCCG TCTCTGTCTGCCCTCCGCCA GGGAATCAGG GAGCGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAACATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTTGCCTACAGGGATGAAGTTGTCACAGATAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAGGGGGACGTAAGGAGGGAGAAAGCTGCTGGAGACACCGTCACTGAGGATGAGGCGGTGTGCGAAATTGAGACTGATAAGAAATCAGTGCAGGTTCCGGCTCCTGCTGCTGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2558#0 -------------------------------------CCCCAGCCTTAATGTTATCCCAT 23 consensus_2558#1 GCCTTTGAAGTTTCCCTTCCGTTTTCGGGCTGCTGTCACACAGCCATAATGTTATCCCAT 60 * ***** ************** consensus_2558#0 TCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAG 83 consensus_2558#1 TCCCGGTGTCTCACCAGGAATTTCAGCCGTTCTCTGTCTGCCCTCCGCCAGGGGAATCAG 120 ************************************************************ consensus_2558#0 GCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAAC 143 consensus_2558#1 GCGTTGGCTCGTCGCTCATCCACTGCTCTAACAATTAACCACTCTATCTCTCTCAACAAC 180 ************************************************************ consensus_2558#0 ATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTT 203 consensus_2558#1 ATTGTAAAGTCAAACCTCCCCACTAATGTCTTCCAAATCCAGTACTTCAGGACATCTGTT 240 ************************************************************ consensus_2558#0 GCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAG 263 consensus_2558#1 GCCTACAGGGATGAAGTTGTCACAGTTAAGACCCCTGCCTTTGCAGAGTCTGTCACAGAG 300 ************************************************************ consensus_2558#0 GGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGT 323 consensus_2558#1 GGGGACGTAAGGTGGGAGAAAGCTGTTGGAGACACCGTCACTGAGGATGAGGTGGTGTGT 360 ************************************************************ consensus_2558#0 GAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAA 383 consensus_2558#1 GAAATTGAGACTGATAAGACATCAGTGCAGGTTCCGTCTCCTGCTGCTGGAGTGATTGAA 420 ************************************************************ consensus_2558#0 GAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGA 443 consensus_2558#1 GAGCTTTTGGTCCCTGATGGAGGGAAGGTTGAAGGGGGAACGCCACTCTTCAAGCTTCGA 480 ************************************************************ consensus_2558#0 AAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCA 503 consensus_2558#1 AAAGGAGCGGGTGCTCCTAAAGCTGCCGAAGCTCCAAAAGCTGAAGCCCCTGCTGCTGCA 540 ************************************************************ consensus_2558#0 GCCCCACCACCACCTTCTGCTGCTGCAGCCCCACCACCACCTTCTGCTGCTGCTTCTCCA 563 consensus_2558#1 GCCCCACCACCACCTTCTGCTGCTGC---------------------------TTCTCCA 573 ************************** ******* consensus_2558#0 CCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTG 623 consensus_2558#1 CCTCCTCCTGCCTCCACCGTGGGACCCATTCCCACCAGTATGCCCCCTGTGCCACCTGTG 633 ************************************************************ consensus_2558#0 CCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCCAGCGTTGCCGCCGCT 683 consensus_2558#1 CCAGCACATGCTATGGACACCAAACCGGTATCAGCCATCAAGCCC--------------- 678 ********************************************* consensus_2558#0 TCACCTGCGGCACAAGCAGAGGGTGCAGCTAAAGGAGTCAGGACAGAGAGCAGGGTTAAG 743 consensus_2558#1 ------------------------------------------------------------ consensus_2558#0 ATGAACCGCATGAGGCTGAGAATTGCC 770 consensus_2558#1 --------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |