cluster # 256

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Takifugu rubripes
cluster # 256 cluster # 256 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_256#0 length = 534 sequences # 1

consensus_256#1 length = 378 sequences # 1

consensusID : consensus_256#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [TGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCTACAGACACTGGGGTGGTTGACAAGTGGGTCATAGACAGTGGAGCGACATCTGACTGGAACACCGGCAGCTTACCAGACAATCGTGGTATGGCCTGTTTAAGGAGCCATGGCACTGAAACAAGCCACAGGGCACGACAGGTGACCAAAGATGACTTCATGACCTTTGACTACATCCTCTGCATGGATGAAAGCAACTTGAGAGAGTTGAACAGGAAAGTGAAGTCGGTGAAGAACTGTAAAGCAAAGATTGAGCTGCTCGGTTCCTACGACCCTCAGAAGCAGCTCATCATTAAAGACCCCTATTATGGGAGCGACAATGACTTTGAGATGGTGTACCAACAGTGTGTACGATGCTGCGAGGCGTTCCTGGAAACGAACTCCTAATGTCTACCCTGAACGTAACTTTCGGAATGGGACACATATTTCTGCTGTCTGCTATAATCCGGAATACCGTTTCACGTCTCATCAGCTTTCTGT]

[+] EMBL FR0055192            [TGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCTACAGACACTGGGGTGGTTGACAAGTGGGTCATAGACAGTGGAGCGACATCTGACTGGAACACCGGCAGCTTACCAGACAATCGTGGTATGGCCTGTTTAAGGAGCCATGGCACTGAAACAAGCCACAGGGCACGACAGGTGACCAAAGATGACTTCATGACCTTTGACTACATCCTCTGCATGGATGAAAGCAACTTGAGAGAGTTGAACAGGAAAGTGAAGTCGGTGAAGAACTGTAAAGCAAAGATTGAGCTGCTCGGTTCCTACGACCCTCAGAAGCAGCTCATCATTAAAGACCCCTATTATGGGAGCGACAATGACTTTGAGATGGTGTACCAACAGTGTGTACGATGCTGCGAGGCGTTCCTGGAAACGAACTCCTAATGTCTACCCTGAACGTAACTTTCGGAATGGGACACATATTTCTGCTGTCTGCTATAATCCGGAATACCGTTTCACGTCTCATCAGCTTTCTGT]




>consensus_256#0
TGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCTACA
GACACTGGGGTGGTTGACAAGTGGGTCATAGACAGTGGAGCGACATCTGACTGGAACACC
GGCAGCTTACCAGACAATCGTGGTATGGCCTGTTTAAGGAGCCATGGCACTGAAACAAGC
CACAGGGCACGACAGGTGACCAAAGATGACTTCATGACCTTTGACTACATCCTCTGCATG
GATGAAAGCAACTTGAGAGAGTTGAACAGGAAAGTGAAGTCGGTGAAGAACTGTAAAGCA
AAGATTGAGCTGCTCGGTTCCTACGACCCTCAGAAGCAGCTCATCATTAAAGACCCCTAT
TATGGGAGCGACAATGACTTTGAGATGGTGTACCAACAGTGTGTACGATGCTGCGAGGCG
TTCCTGGAAACGAACTCCTAATGTCTACCCTGAACGTAACTTTCGGAATGGGACACATAT
TTCTGCTGTCTGCTATAATCCGGAATACCGTTTCACGTCTCATCAGCTTTCTGT

consensusID : consensus_256#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [GTATGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCTACAGACACTGGGGTGGTTGACAAGGTAAGTACCCCTTGTTAAACGATAAAGACTGCTTTCTGTACCTTTTTGTTAAATTTTTAACAAATAATTGTTAAAAGTTTTTGAAGACAGAAGACATGTCTCTTCCACTTGCAGTCACGCAGGCCTAACAATGTACCAAACTGACAGAATTCTGAAAATCCATATATCCGTGTGATGCCACGAGCACCCTTTTCCTCCAGTGTATAAATCTTTTGTACTATCTTATTGTTCTCCATGCTTCGCTCTGCTTAGGGGAGGATAGACAGTGCTGCCACCTCCACCTATGAGATAGGA]

[+] EMBL FR0058480            [GTATGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCTACAGACACTGGGGTGGTTGACAAGGTAAGTACCCCTTGTTAAACGATAAAGACTGCTTTCTGTACCTTTTTGTTAAATTTTTAACAAATAATTGTTAAAAGTTTTTGAAGACAGAAGACATGTCTCTTCCACTTGCAGTCACGCAGGCCTAACAATGTACCAAACTGACAGAATTCTGAAAATCCATATATCCGTGTGATGCCACGAGCACCCTTTTCCTCCAGTGTATAAATCTTTTGTACTATCTTATTGTTCTCCATGCTTCGCTCTGCTTAGGGGAGGATAGACAGTGCTGCCACCTCCACCTATGAGATAGGA]




>consensus_256#1
GTATGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCT
ACAGACACTGGGGTGGTTGACAAGGTAAGTACCCCTTGTTAAACGATAAAGACTGCTTTC
TGTACCTTTTTGTTAAATTTTTAACAAATAATTGTTAAAAGTTTTTGAAGACAGAAGACA
TGTCTCTTCCACTTGCAGTCACGCAGGCCTAACAATGTACCAAACTGACAGAATTCTGAA
AATCCATATATCCGTGTGATGCCACGAGCACCCTTTTCCTCCAGTGTATAAATCTTTTGT
ACTATCTTATTGTTCTCCATGCTTCGCTCTGCTTAGGGGAGGATAGACAGTGCTGCCACC
TCCACCTATGAGATAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_256#0      ---TGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCT 57
consensus_256#1      GTATGTTTGGGGAATATTTGCAGATCCCCCATTGCCGAAGCAGTTTTCAGGAAAATGGCT 60
                        *********************************************************

consensus_256#0      ACAGACACTGGGGTGGTTGACAAGTGGGTCATAGACAGTGGAGCGACATCTGACTGGAAC 117
consensus_256#1      ACAGACACTGGGGTGGTTGACAAGGTAAGTACCCCTTGTTAAACGATA---------AAG 111
                     ************************      *      **  * *** *         ** 

consensus_256#0      ACCGGCAGCTTACCAGACAATCGTGGTATGGCCTGTTTAAGGAGCCATGGCACTGAAACA 177
consensus_256#1      ACT----GCTTTCTGTACCTTTTTGTTAAA---TTTTTAACAAATAAT-----TGTTAAA 159
                     **     **** *   **  *  ** **     * *****  *   **     **  * *

consensus_256#0      AGCCACAGGGCACGACAGGTGACCAAAGATGACTTCATGACCTTTGACTACATCCTCTGC 237
consensus_256#1      AGTTTTTGAA---GACAGAAGAC-----ATGTCTCTTCCACTTGCAGTCACGCAGGCC-T 210
                     **     *     *****  ***     *** **     ** *      **     *   

consensus_256#0      ATGGATGAAAGCAACTTGAGAGAGTTGAACAGGAAAGTGAAGTCGGTGAAGAACTGTAAA 297
consensus_256#1      AACAATGTAC-CAAACTGACAGAATTCTGAAAATCCAT-ATATCCGTGTGATGCCACGA- 267
                     *   *** *  ***  *** *** **    *      * *  ** ***     *    * 

consensus_256#0      GCAAAGATTGAGCTGCTCGGTTCCTACGACCCTCAGAAGCAGCTCATCATTAAAGACCCC 357
consensus_256#1      GCACCCTTT---TCCTCCAGTGTATA-AATCTTTTGTACTATCTTATTGTTCTCCATGCT 323
                     ***    **        * **   **  * * *  * *  * ** **  **    *  * 

consensus_256#0      TATTATGGGAGCGACAATGACTTTGAGATGGTG-TACCAACAGTGTGTACGATGCTGCGA 416
consensus_256#1      TCGCTCTGCTTAGGGGAGGAT----AGACAGTGCTGCCACCTCCACCTATGA-GATAGGA 378
                     *      *    *   * **     ***  *** * *** *      ** ** * *  **

consensus_256#0      GGCGTTCCTGGAAACGAACTCCTAATGTCTACCCTGAACGTAACTTTCGGAATGGGACAC 476
consensus_256#1      ------------------------------------------------------------
                                                                                 

consensus_256#0      ATATTTCTGCTGTCTGCTATAATCCGGAATACCGTTTCACGTCTCATCAGCTTTCTGT 534
consensus_256#1      ----------------------------------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)