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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1147 fasta sequence
[CACTAGAAAGAATCCCCGTCCAGGAACAGTTCGCTCGCCGTTCCAGCGGCATTTAAAGGGGTTTATCTCGTCGCTTCCCCTCTCATT-TAAACCACCGACTCCCGGTTTGGATTAACTCTGACTCTCCCACTTTGGTATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGATCAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGTTCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGTACTGCCGTAAACACTACTGGGAGAAGTTTGGAGAGCTCTGTCACGGCTGCTCGCTCCTCATGACCGGCCCCGCCATGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGTCAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGGTGGGGACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGATGATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGGCAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACCTCCCGCATGCGTCTGTCCTCTCCTTCCAATGCAGTCCTGGAAAGAACCGAATCCGTCGAGGACAGCTCGCTGAAACGGAGGTCTTTGAGGCGCAGCAACAGCATCTGCAAGTCGCCCGGGCCCAATTCACCCAAAGAGCTCCCTTTTATGACGAGAGACATCGGCCGCTCCGAGTCTCTGCGGTCGT]
[+] EMBL CA588666 [CACTAGAAAGAATCCCCGTCCAGGAACAGTTCGCTCGCCGTTCCTTTGAAATTTAAAGGGGTTTATCTCGTCGCTTCCCCTCTCATT TAAACCACCGACTCCCGGTTTGGATTAACTCTGACTCTCCCACTTTGGTATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGATCAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGTTCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGTACTGCCGTAAACACTACTGGGAGAAGTTTGGAGAGCTCTGTCACGGCTGCTCGCTCCTCATGACCGGCCCCGCCATGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGTCAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGGTGGGGACAGGATCCTGGAG ]
[+] EMBL BU808107 [ CCAGGAACAGTTCGCTCGCCGTTCCAGCGGCATTTAAAGGGGTTTATCTCGTCGCTTCCCCTCTCATT TAAACCACCGACTCCCGGTTTGGATTAACTCTGACTCTCCCACTTTGGTATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGATCAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGTTCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGTACTGCCGTAAACACTACTGGGAGAAGTTTGGAGAGCTCTGTCACGGCTGCTCGCTCCTCATGACCGGCCCCGCCATGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGA ]
[+] EMBL FR0058443 [ CGTTCCAGCGGCATTTAAAGGGGTTTATCTCGTCGCTTCCCCTCTCATT TAAACCACCGACTCCCGGTTTGGATTAACTCTGACTCTCCCACTTTGGTATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGATCAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGTTCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGGACTGCCGGAAACACTACTGGGAGAAGTTTGGAGAGCTCTTGCACGGCTGCTCGCT ]
[+] EMBL FR0058396 [ TTATCTCGTCGCTTCCCCTCTCATTGGAGACCACCGACTCCCGGTTTGGATTAACTCTGACTCTCCCACTTTGGNATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGATCAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGGTTCAAACGAAAGGTTTCCAGGACACCTGGCACAACGATTGCGTTCAGTGGTCCGTGTGCTCT ]
[+] EMBL BU807401 [ ACTCCGA AGGTGAGACGCATTTCAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATGCAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGTTCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGTACTGCCGTAAACACTACTGGGAGAAGTTTGGAGAGCTCTGTCACGGCTGCTCGCTCCTCATGACCGGCCCCGCCATGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCAT ]
[+] EMBL BU807225 [ AGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGTCAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGTTGGGGACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGATGATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGGCAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACCTCCCGCATGCGTCTGTCCTCTCCTTCCAATGCAGTCCTGGAAAGAACCGAATCCGTCGAGGACAGCTCGCTGAAACGGAGGTCTTTGAGGCGCAGCAACAGCATCTGCAAGTCGCCCGGGCCCAATTCACCCAAAGAGCTCCCTTTTATGACGAGAGACATCGGCCGCTCCGAGTCTCTGCGGTCGT]
consensusID : consensus_2560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence
[TCTTTGTCCAGTGGAGGGAACGAGTCGGTCAGCCTGTCTGTGTTTGGGTTTCCAGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGACAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGTTGGGGACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGATGATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGGCAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACCTCCCGCATGCGTCTGTCCTCTCCTTCCAATGCAGTCCTGGAAAGA]
[+] EMBL BU808351 [TCTTTGTCCAGTGGAGGGAACGAGTCGGTCAGCCTGTCTGTGTTTGGGTTTCCAGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGACAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGTTGGGGACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGATGATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGGCAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACCTCCCGCATGCGTCTCTCCTCTCCTTCCAATGCAGTCCTGGAAAGA]
[+] EMBL BU807071 [TCTTTGTCCAGTGGAGGGAACGAGTCGGTCAGCCTGTCTGTGTTTGGGTTTCCAGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGCTGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATACTGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAATCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAACGGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGTCAACGGCACGGCGAGCGTCCAAGTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGTTGGGGACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGATGATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGGCAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACCTCCCGCATGCGTCTGTCCTCTCCTTCCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2560#0 CACTAGAAAGAATCCCCGTCCAGGAACAGTTCGCTCGCCGTTCCAGCGGCATTTAAAGGG 60
consensus_2560#1 ------------------------------------------------------------
consensus_2560#0 GTTTATCTCGTCGCTTCCCCTCTCATTTAAACCACCGACTCCCGGTTTGGATTAACTCTG 120
consensus_2560#1 ------------------------------------------------------------
consensus_2560#0 ACTCTCCCACTTTGGTATGAAATCTTTGTGAGCGGGTTGAAGCATCGACGACACTCAGAT 180
consensus_2560#1 ------------------------------------------------------------
consensus_2560#0 CAGATGGAGGACTCCGAAGGTACAAATGGTTGTTACTGTGCGGGTTGTGGGGGGAAAATG 240
consensus_2560#1 ------------------------------------------------------------
consensus_2560#0 CAGGACGCGTTTCAAACGAAAGTCTTCCAGGACACCTGGCACAACGATTGCTTTCAGTGT 300
consensus_2560#1 ------------------------------------------------------------
consensus_2560#0 TCCGTGTGCTCTGACCACCTGACCAACTGGTACTATGAAAAGGACGGGAAGCTGTACTGC 360
consensus_2560#1 ------------------------------------------------------------
consensus_2560#0 CGTAAACACTACTGGGAGAAGTTTGGAGAGCTCTGTCACGGCTGCTCGCTCCTCATGACC 420
consensus_2560#1 -----TCTTTGTCCAGTGGAGG--GAACGAGTCGGTCA-GCCTGTCTG-------TGTTT 45
* * * * ** * * ** **** * *** * **
consensus_2560#0 GGCCCCGCCATGGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGC 480
consensus_2560#1 GGGTTT-CCA-GGTAGCCGGAGAGCACAAGTACCACCCCGAGTGCTTTGTGTGTTTGAGC 103
** *** *************************************************
consensus_2560#0 TGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATAC 540
consensus_2560#1 TGCAAGGTGGTGATTGAAGACCGGGATACGTACGCCCTGGTGGAACGATCCAAACTATAC 163
************************************************************
consensus_2560#0 TGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAA 600
consensus_2560#1 TGTGGCAAGTGTTACAAGCAGGTGATCCTCACGCCCATGTTGGAAAAACGCTCCAACGAA 223
************************************************************
consensus_2560#0 TCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAAC 660
consensus_2560#1 TCGATCGTCGACTCGCTGCCTCACACGGTGACCCTCATCTCCATGCCTTCTGCGGCCAAC 283
************************************************************
consensus_2560#0 GGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGTCAACGGCACGGCGAGCGTCCAA 720
consensus_2560#1 GGCAAGAGGGGCCTGTCCGTCTCGGTGATGAGGGACGACAACGGCACGGCGAGCGTCCAA 343
************************************* **********************
consensus_2560#0 GTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGGTGGG 780
consensus_2560#1 GTCAAGGAAGTCAGAGGGATGCTTCTTAGTCCAGAGGTGCGGAACGCCATCCACGTTGGG 403
******************************************************* ****
consensus_2560#0 GACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGAT 840
consensus_2560#1 GACAGGATCCTGGAGATTAACGGTCTTCCTGTTGGGACAATGATGGAGGCGGAGGTGGAT 463
************************************************************
consensus_2560#0 GATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGG 900
consensus_2560#1 GATCTTATTCACTGCACCAGTCACACCCTGCAGCTCCTGATAGAATATGACCCAGTCAGG 523
************************************************************
consensus_2560#0 CAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACC 960
consensus_2560#1 CAGCGTTTGGACAGGCTGAGGCTGGGCTCACCCAGGACCCGCTTCGGAGCCCCGGCTACC 583
************************************************************
consensus_2560#0 TCCCGCATGCGTCTGTCCTCTCCTTCCAATGCAGTCCTGGAAAGAACCGAATCCGTCGAG 1020
consensus_2560#1 TCCCGCATGCGTCTGTCCTCTCCTTCCAATGCAGTCCTGGAAAGA--------------- 628
*********************************************
consensus_2560#0 GACAGCTCGCTGAAACGGAGGTCTTTGAGGCGCAGCAACAGCATCTGCAAGTCGCCCGGG 1080
consensus_2560#1 ------------------------------------------------------------
consensus_2560#0 CCCAATTCACCCAAAGAGCTCCCTTTTATGACGAGAGACATCGGCCGCTCCGAGTCTCTG 1140
consensus_2560#1 ------------------------------------------------------------
consensus_2560#0 CGGTCGT 1147
consensus_2560#1 -------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |