These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 430 fasta sequence [TCTTGATCATTCCAGGGAAAAATCATCCGAGGGGACGGAGATTCCACCTCTTATTCATCAAT-AATCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCAGGAACCTGAAGAACGTCCTGGTGGTGTCTGTCGGCTTCCTGTTTCTGTTCATGGCTGCTGGAGGCCTGCAGAACTTACAGAGCAGCCTGAACGCAGAGGGAGGGGG] [+] EMBL CA590013 [TCTTGATCATTCCAGGGAAAAATCATCCGAGGGGACGGAGATTCCACCTCTTATTCATCAAT AATCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCAGGAACCTGAAGAACGTCCTGGTGGTGTCTGTCGGCTTCCTGTTTCTGTTCATGGCTGCTGGAGGCCTGCAGAACTTACAGAGCAGCCTGAACGCAGAGGGAGGGGG] [+] EMBL FR0059223 [ CGAGGGGACGGAGATTCCACCTCTTATTCATCAATGAGTCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAGAGTTATCGGGCGACTTCCTGACAAGCGACTCAGGTTTTTGGAACTTTGATTTCCCGATTCTTGGAATTTACCCTGAAGATTTCCCGGGAGCCACGATGCTTAGCA ] [+] EMBL FR0059960 [ CGAGGGGACGGAGATTCCACCTCTTATTCATCAAT AATGTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTGTGGTTTCCCGATTCTTGAAG ] [+] EMBL FR0059380 [ GGGGATTGAGATTCCACCTCTTATTCATCAAT AAGGTGCTGCTGTGGAAGTTCTGACCCCACTCTCGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGGTTACCCTGAAGATTTCCCGGGAGCCACGATGCTCAGCAGGAACCTGAAGAACGTCCTGGTGG GGCTGTCGGCTTCCTGTTTCTGGTCATGGCTGCTGGAAGC ] [+] EMBL FR0059763 [ ATTCCACCTCTTATTCATCAAG GGTCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGATTTCCCGGA GCCACGATGCTCAGCAGGAACCTGAAGAA ] [+] EMBL FR0059883 [ CACCTCTTATTCATCAAT AATCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAAAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCA ] [+] EMBL FR0059121 [ CTCTTATTCATCAAT AATCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACGAGATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTGAAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCAGAGAGTTATCGGGCGACTTCCTGACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCAGGAACCTGAAGAACGTCCTGGTGGTGTCTGTCGGCTTCCTGTTTCTGTTCATGGCTGCTGGAGGCCTGCAGAA ] consensusID : consensus_2562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [AGAGGTGTGATGCCAAATCGCGACAATAGGCGTGGAGTTGAGGGCGATGGGTTCATCTAGCACATAGCACGAGGAGGGAGTGCACGCGGGCGTGTGAGAGATGGAGACGCAGAGGGAAGGCAGAGATATGGATGAAGACCTGCACGCTGGAATGTGGTTTCTTTACGACAGTAAATTCCACTCTGACCTCTTCAGCAAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCA] [+] EMBL FR0060427 [AGAGGTGTGATGCCAAATCGCGACAATAGGCGTGGAGTTGAGGGCGATGGGTTCATCTAGCACATAGCACGAGGAGGGAGTGCACGCGGGCGTGTGAGAGATGGAGACGCAGAGGGAAGGCAGAGATATGGATGAAGACCTGCACGCTGGAATGTGGTTTCTTTACGACAGTAAATTCCACTCTGACCTCTTCAGCAAAGTTTACCCTGAAGATTTCCCGGAGGCCACGATGCTCAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2562#0 TCTTGATCATTCCAGGGAAAAATCATCCGAGGGGACGGAGATTCCACCTCTTATTCATCA 60 consensus_2562#1 ------------------------------------------------------------ consensus_2562#0 ATAATCTGCTGCTGTGGAAGTTCTGACCCCACTCTTGTAAAAAGGGGGGCAGCGTTTACG 120 consensus_2562#1 ----------------AGAGGTGTGATGCCAAA-TCGCGACAATAGGCGTGGAGTTGAGG 43 ** * *** *** * * * ** ** * * *** * * consensus_2562#0 A-GATGTCGCAATCTGGGCTGGAGCCCTGTGGGGGGGTGTGATGGACTTTGTTCTCCTTG 179 consensus_2562#1 GCGATGGGTTCATCTAGCACATAGCACGAGGAGGGAGTGCACGCGGGCGTGTGAGAGATG 103 **** **** * *** * * *** *** * *** ** consensus_2562#0 AAGCGATTAGTAGTGAATTAACGTCCTGTCACAGGCA-GAAAGTTATCGGGCGACTTCCT 238 consensus_2562#1 GAGACGCAGAGGGAAGGCAGAGATATGGATGAAGACCTGCACGCTGGAATGTGGTTTCTT 163 ** * * * * ** * * * * * * * *** * consensus_2562#0 GACAAGCGACTCAGTTTTTTGGAACTTTGTTTTCCCGATTCTTGAAGTTTACCCTGAAGA 298 consensus_2562#1 TACGAC--AGTAAATTCC-----ACTCTGACCTCTTCAGC---AAAGTTTACCCTGAAGA 213 ** * * * * ** *** ** ** * **************** consensus_2562#0 TTTCCCGGAGGCCACGATGCTCAGCAGGAACCTGAAGAACGTCCTGGTGGTGTCTGTCGG 358 consensus_2562#1 TTTCCCGGAGGCCACGATGCTCAGCA---------------------------------- 239 ************************** consensus_2562#0 CTTCCTGTTTCTGTTCATGGCTGCTGGAGGCCTGCAGAACTTACAGAGCAGCCTGAACGC 418 consensus_2562#1 ------------------------------------------------------------ consensus_2562#0 AGAGGGAGGGGG 430 consensus_2562#1 ------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |