These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 683 fasta sequence [GCCAATAAAACAGCAGCGCGGCTCCGTTACATAAGCGACCAAGTCCGCGGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG-ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATGGGGGCCAACATTGCCAACGAGGTCGCCGATGAGAAGTTTTGCGAGACCACCATTGGGTGCAAAAATAAGAGCCATGGTCCCCTCCTAAAGGAGCTGATGCAGACTATTAACTTCAGGGTTACAGTAGTGGAAGAATACGATGTG] [+] EMBL CA333184 [GCCAATAAAACAGCAGCGCGGCTCCGTTACATAAGCGACCAAGTCCGCGGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTCATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATGGGGGCCAACATTGCCAACGAGGTCGCCGATGAGAAGTTTTGCGAGACCACCATTGGGTGCAAAAATAAGAGCCATGGTCCCCTCCTAAAGGAG ] [+] EMBL CA591004 [ CGGCTCCGTTACATAAGCGACCAAGTCCGCGGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCGTCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAGAACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATGGGGGCCAACATTGCCAACGAGGTCGCCGATGAGAAGTTTTGCGAGACCACCATTGGGTGCAAAAATAAGAGCCATGGTCCCCTCCTAAAGGAGCTGATGC ] [+] EMBL CA589833 [ GGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATGGGGGCCAACATTGCCAACGAGGTCGCCGATGAGAAGTTTTGCGAGACCACCATTGGGTGCAAAAATAAGAGCCATGGTCCCCTCCTAAAGGAGCTGATGCAGACTATTAACTTCAGGGTTACAGTAGTGGAAGAATACGATGTG] [+] EMBL CA589674 [ CTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCG ] [+] EMBL CA590147 [ GAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAACATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGACTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATGG ] [+] EMBL FR0059703 [ tTTCATCATCGGCTCTGGTAACTGGGGGTCTGCCATTGCCAAAATAGTGGGAGCCAACTCTGCCCAAAATTCCAAATTTGACAAGACTGCGAAAATGTGGGTGTTTGAGTAGACGGTGAACGGTCGCAAGTCGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGGACCTTCCTGGGCACAAACTGCCAATCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGCCATTTTGGTTTTCGTGATCCCGGACCAGTT ] [+] EMBL FR0063012 [ TCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGNATCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAG ACCTGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGGGATCCCGCA ] consensusID : consensus_2568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [GACGCGGGACATGTGGTGTACAGAAGAGCAAGCGACCAAGTCCGCGGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAGACCTGGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGT] [+] EMBL BU805967 [GACGCGGGACATGTGGTGTACAGAAGAGCAAGCGACCAAGTCCGCGGCGGCAACGGCTCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCATCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAAATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCAAACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAACTGCCAACCAACGTGCTAGCTGTGCCAGACCTGGGTGGAGGCGTCCAAAGACGCCGACATTTTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2568#0 GCCAATAAAACAGCAGCGCGGCTCCGTTACATAAGCGACCAAGTCCGCGGCGGCAACGGC 60 consensus_2568#1 ---GACGCGGGACATGTGGTGTACAGAAGAGCAAGCGACCAAGTCCGCGGCGGCAACGGC 57 * * * * * * * **************************** consensus_2568#0 TCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCA 120 consensus_2568#1 TCCATCTCAGCTCTGCGCGTCACCTCTCCGCAATGGCAGCTCCGAAGAAAGTCTGCATCA 117 ************************************************************ consensus_2568#0 TCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAA 180 consensus_2568#1 TCGGCTCTGGGAACTGGGGTTCTGCCATTGCCAAAATAGTGGGAGCCAACGCTGCCCAAA 177 ************************************************************ consensus_2568#0 ATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCA 240 consensus_2568#1 ATTCCAAATTTGACAAGACTGTGAAAATGTGGGTGTTTGAGGAGACGGTGAACGGGCGCA 237 ************************************************************ consensus_2568#0 AACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAAC 300 consensus_2568#1 AACTGACCGAAATAATCAACACTGAGCATGAAAATGTGAAGTACCTTCCTGGGCACAAAC 297 ************************************************************ consensus_2568#0 TGCCAACCAACGTGCTAGCTGTGCCAGACCTGG-TGGAGGCGTCCAAAGACGCCGACATT 359 consensus_2568#1 TGCCAACCAACGTGCTAGCTGTGCCAGACCTGGGTGGAGGCGTCCAAAGACGCCGACATT 357 ********************************* ************************** consensus_2568#0 TTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGTAAC 419 consensus_2568#1 TTGGTTTTCGTGATCCCGCACCAGTTTATTGGGAAAGTGTGTGACACTATGAGCGGT--- 414 ********************************************************* consensus_2568#0 ATAAAGAAGGAGGCTATAGGAATATCCCTCATCAAGGGTGTAGACGAAGGGCCCGACGGA 479 consensus_2568#1 ------------------------------------------------------------ consensus_2568#0 CTGAAGCTCATCTCAGACGTTATCCAGGAGAAGCTCGGCATCACCATGAGCGTCCTGATG 539 consensus_2568#1 ------------------------------------------------------------ consensus_2568#0 GGGGCCAACATTGCCAACGAGGTCGCCGATGAGAAGTTTTGCGAGACCACCATTGGGTGC 599 consensus_2568#1 ------------------------------------------------------------ consensus_2568#0 AAAAATAAGAGCCATGGTCCCCTCCTAAAGGAGCTGATGCAGACTATTAACTTCAGGGTT 659 consensus_2568#1 ------------------------------------------------------------ consensus_2568#0 ACAGTAGTGGAAGAATACGATGTG 683 consensus_2568#1 ------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |