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Takifugu rubripes
cluster # 2578 cluster # 2578       Sequences # 8       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2578#0 length = 697 sequences # 7  
 consensus_2578#1 length = 283 sequences # 1  
consensusID : consensus_2578#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 697
fasta sequence 
                              [CCGCTGCCGGTAGCGCGAGCCAATTGCAACGAGGAAGAAAGCAGAAGTTTCTGTGGGGTTAAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCA-GTGGTTCAA-GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGNCCTCACCAAACCCCCCAAGAAGCCCCTCACTCAAGGCACGCCCAGGACACCCGTTGGCAAGGTGGGCCCCAAAGTCTCCAACGTCAGCGCCAAGAAGCCG]

[+] EMBL BU804971             [CCGCTGCCGGTAGCACGAGCCAATTGCAACGAGGAAGAAAGCAGAAGTTTCTGTGGGGTTAAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAGGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCA GTGGTTCAA GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGCCCTC                                                                                                ]
[+] EMBL BU808562             [            GCGCGAGCCAATTGCAACGAGGAAGAAAGCAGAAGTTTCTGTGGGGTTAAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAATTCGTCCA GTGGTTCAA GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGG                                                                                                                                                        ]
[+] EMBL CA589734             [                               AGGAAGAAAGCAGAAGTTTCTGTGGGGTTAAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCA GTGGGTCAA GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGNCCTCACC AACCCCCCAAGAAGCCCCTCACTCAAGGCACGCCCCAGACACCCGTTGGCAAAGTGGGCC                                ]
[+] EMBL CA589516             [                                                            AAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCA GTGGTTCAA GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGGCCTCACCAAACCCCCCAAGAAGCCCCTCACTCAAGCCACGCCCAGACCACCCGTTGCCAAGGTGGCCCCCAAAGTCTCCAACGTCAGCGCCAAGAAGCCG]
[+] EMBL CA588233             [                                                                                                     TCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCA GTGGTTCAA GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGGAGGCCAGGCAGGGCCAGGATGGA                                                                                                                                 ]
[+] EMBL FR0059377            [                                                                                                                        CTGTTCTGAAGAATCTTTACTACTGCCCTAGGGGTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGCTCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTGAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGGGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCAGGGGGTTCAAGGAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGA                                                                                                                                                                ]
[+] EMBL FR0062837            [                                                                                                                               GAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGGGTCCCTCTCAAG AGGGCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTG                                                                                                                                                                                                                                                                                                              ]




>consensus_2578#0
CCGCTGCCGGTAGCGCGAGCCAATTGCAACGAGGAAGAAAGCAGAAGTTTCTGTGGGGTT
AAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCAC
CTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTA
CTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGA
GTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCA
GTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAA
GCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGG
CGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGA
GTTCGTCCAGTGGTTCAAGAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCC
CGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGNCCT
CACCAAACCCCCCAAGAAGCCCCTCACTCAAGGCACGCCCAGGACACCCGTTGGCAAGGT
GGGCCCCAAAGTCTCCAACGTCAGCGCCAAGAAGCCG

consensusID : consensus_2578#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence 
                              [CGTTTTACGCGACACCTGTTCTGAGAACTTACTACTGCCCTACAGTTGACCCACATGGCTGCAACGCTACTCCACCTCGTCACCAGCGACAACCTGACCGCACGACATGTTGGGTGGATCAACGAGCTCTGCAGATGAACCTCACCAAGACGAGATGCTGGTCAGGAGCTGCTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGGGTCCTTTAAGAAGGCAAGTTTGGACCAAGCTGGACACGAATCATCCACAACTTCAAGCTGCTGCAGGTCTCCTTC]

[+] EMBL FR0061950            [CGTTTTACGCGACACCTGTTCTGAGAACTTACTACTGCCCTACAGTTGACCCACATGGCTGCAACGCTACTCCACCTCGTCACCAGCGACAACCTGACCGCACGACATGTTGGGTGGATCAACGAGCTCTGCAGATGAACCTCACCAAGACGAGATGCTGGTCAGGAGCTGCTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGGGTCCTTTAAGAAGGCAAGTTTGGACCAAGCTGGACACGAATCATCCACAACTTCAAGCTGCTGCAGGTCTCCTTC]




>consensus_2578#1
CGTTTTACGCGACACCTGTTCTGAGAACTTACTACTGCCCTACAGTTGACCCACATGGCT
GCAACGCTACTCCACCTCGTCACCAGCGACAACCTGACCGCACGACATGTTGGGTGGATC
AACGAGCTCTGCAGATGAACCTCACCAAGACGAGATGCTGGTCAGGAGCTGCTACTGCCA
GTTCATGGACATGCTCTTCCCCAACTGGGTCCTTTAAGAAGGCAAGTTTGGACCAAGCTG
GACACGAATCATCCACAACTTCAAGCTGCTGCAGGTCTCCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2578#0      CCGCTGCCGGTAGCGCGAGCCAATTGCAACGAGGAAGAAAGCAGAAGTTTCTGTGGGGTT 60
consensus_2578#1      ------------------------------------------------------------
                                                                                  

consensus_2578#0      AAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCAC 120
consensus_2578#1      -------------------------------------------CGTTT-TACGCGA-CAC 15
                                                                 ***** ******* ***

consensus_2578#0      CTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTA 180
consensus_2578#1      CTGTTCTGAGAA---CTTACTACTGCCCTACAGTTGACCCAC-ATGGCTGC-AACG-CTA 69
                      *********  *    ************************** *******  **** ***

consensus_2578#0      CTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGA 240
consensus_2578#1      CTCCACCTCG-TCACCAGCGACAACCTGA-CCGC-ACGACATGTTGG-GTGGATCAACGA 125
                      ********** ****************** **** ************ ************

consensus_2578#0      GTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCA 300
consensus_2578#1      G-CTCTGCAGATGAACCTCACCAAGA-CGAGATGCTG--GTCAGGAGCTGCT-ACTGCCA 180
                      * ************************ **********   ************ *******

consensus_2578#0      GTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAA 360
consensus_2578#1      GTTCATGGACATGCTCTTCCCCAACTGGGTCCTTT--AAGAAGG-CAAGTTTGGA-CCAA 236
                      *************************** **** *   ******* ********** ****

consensus_2578#0      GCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGG 420
consensus_2578#1      GCTGGA-CACGAAT-CATCCACAACTTCAAGCTGCTGCAGGTCTCCTTC----------- 283
                      ****** ******* **********************************           

consensus_2578#0      CGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGA 480
consensus_2578#1      ------------------------------------------------------------
                                                                                  

consensus_2578#0      GTTCGTCCAGTGGTTCAAGAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCC 540
consensus_2578#1      ------------------------------------------------------------
                                                                                  

consensus_2578#0      CGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGNCCT 600
consensus_2578#1      ------------------------------------------------------------
                                                                                  

consensus_2578#0      CACCAAACCCCCCAAGAAGCCCCTCACTCAAGGCACGCCCAGGACACCCGTTGGCAAGGT 660
consensus_2578#1      ------------------------------------------------------------
                                                                                  

consensus_2578#0      GGGCCCCAAAGTCTCCAACGTCAGCGCCAAGAAGCCG 697
consensus_2578#1      -------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)