These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 697 fasta sequence [CCGCTGCCGGTAGCGCGAGCCAATTGCAACGAGGAAGAAAGCAGAAGTTTCTGTGGGGTTAAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCA-GTGGTTCAA-GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGNCCTCACCAAACCCCCCAAGAAGCCCCTCACTCAAGGCACGCCCAGGACACCCGTTGGCAAGGTGGGCCCCAAAGTCTCCAACGTCAGCGCCAAGAAGCCG] [+] EMBL BU804971 [CCGCTGCCGGTAGCACGAGCCAATTGCAACGAGGAAGAAAGCAGAAGTTTCTGTGGGGTTAAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAGGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCA GTGGTTCAA GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGCCCTC ] [+] EMBL BU808562 [ GCGCGAGCCAATTGCAACGAGGAAGAAAGCAGAAGTTTCTGTGGGGTTAAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAATTCGTCCA GTGGTTCAA GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGG ] [+] EMBL CA589734 [ AGGAAGAAAGCAGAAGTTTCTGTGGGGTTAAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCA GTGGGTCAA GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGNCCTCACC AACCCCCCAAGAAGCCCCTCACTCAAGGCACGCCCCAGACACCCGTTGGCAAAGTGGGCC ] [+] EMBL CA589516 [ AAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCA GTGGTTCAA GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGGCCTCACCAAACCCCCCAAGAAGCCCCTCACTCAAGCCACGCCCAGACCACCCGTTGCCAAGGTGGCCCCCAAAGTCTCCAACGTCAGCGCCAAGAAGCCG] [+] EMBL CA588233 [ TCCGTTTCTACGCGATCACCTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCA GTGGTTCAA GAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCCCGTGGAGGCCAGGCAGGGCCAGGATGGA ] [+] EMBL FR0059377 [ CTGTTCTGAAGAATCTTTACTACTGCCCTAGGGGTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGCTCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTGAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGGCGGGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGAGTTCGTCCAGGGGGTTCAAGGAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGA ] [+] EMBL FR0062837 [ GAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTACTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGAGTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGGGTCCCTCTCAAG AGGGCAAGTTTGGAGCCAAGCTGGAGCACGAATACATCCACAACTTCAAGCTGCTG ] consensusID : consensus_2578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [CGTTTTACGCGACACCTGTTCTGAGAACTTACTACTGCCCTACAGTTGACCCACATGGCTGCAACGCTACTCCACCTCGTCACCAGCGACAACCTGACCGCACGACATGTTGGGTGGATCAACGAGCTCTGCAGATGAACCTCACCAAGACGAGATGCTGGTCAGGAGCTGCTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGGGTCCTTTAAGAAGGCAAGTTTGGACCAAGCTGGACACGAATCATCCACAACTTCAAGCTGCTGCAGGTCTCCTTC] [+] EMBL FR0061950 [CGTTTTACGCGACACCTGTTCTGAGAACTTACTACTGCCCTACAGTTGACCCACATGGCTGCAACGCTACTCCACCTCGTCACCAGCGACAACCTGACCGCACGACATGTTGGGTGGATCAACGAGCTCTGCAGATGAACCTCACCAAGACGAGATGCTGGTCAGGAGCTGCTACTGCCAGTTCATGGACATGCTCTTCCCCAACTGGGTCCTTTAAGAAGGCAAGTTTGGACCAAGCTGGACACGAATCATCCACAACTTCAAGCTGCTGCAGGTCTCCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2578#0 CCGCTGCCGGTAGCGCGAGCCAATTGCAACGAGGAAGAAAGCAGAAGTTTCTGTGGGGTT 60 consensus_2578#1 ------------------------------------------------------------ consensus_2578#0 AAAAGAGTTCCAGCTGGGCTTTCTATGACCGCAGGATCCAGTCCGTTTCTACGCGATCAC 120 consensus_2578#1 -------------------------------------------CGTTT-TACGCGA-CAC 15 ***** ******* *** consensus_2578#0 CTGTTCTGAAGAATCTTTACTACTGCCCTACAGTTGACCCACGATGGCTGTGAACGTCTA 180 consensus_2578#1 CTGTTCTGAGAA---CTTACTACTGCCCTACAGTTGACCCAC-ATGGCTGC-AACG-CTA 69 ********* * ************************** ******* **** *** consensus_2578#0 CTCCACCTCGGTCACCAGCGACAACCTGAGCCGCCACGACATGTTGGTGTGGATCAACGA 240 consensus_2578#1 CTCCACCTCG-TCACCAGCGACAACCTGA-CCGC-ACGACATGTTGG-GTGGATCAACGA 125 ********** ****************** **** ************ ************ consensus_2578#0 GTCTCTGCAGATGAACCTCACCAAGATCGAGATGCTGTGTTCAGGAGCTGCTTACTGCCA 300 consensus_2578#1 G-CTCTGCAGATGAACCTCACCAAGA-CGAGATGCTG--GTCAGGAGCTGCT-ACTGCCA 180 * ************************ ********** ************ ******* consensus_2578#0 GTTCATGGACATGCTCTTCCCCAACTGTGTCCCTCTCAAGAAGGTCAAGTTTGGAGCCAA 360 consensus_2578#1 GTTCATGGACATGCTCTTCCCCAACTGGGTCCTTT--AAGAAGG-CAAGTTTGGA-CCAA 236 *************************** **** * ******* ********** **** consensus_2578#0 GCTGGAGCACGAATACATCCACAACTTCAAGCTGCTGCAGGTCTCCTTCAAAAAGATGGG 420 consensus_2578#1 GCTGGA-CACGAAT-CATCCACAACTTCAAGCTGCTGCAGGTCTCCTTC----------- 283 ****** ******* ********************************** consensus_2578#0 CGTGGACAAGATCATCCCAGTAGACAAACTGGTGAAGGGGAAGTTCCAGGACAACTTTGA 480 consensus_2578#1 ------------------------------------------------------------ consensus_2578#0 GTTCGTCCAGTGGTTCAAGAAGTTCTTCGACGCCAACTACGATGGGAAGGAGTACGACCC 540 consensus_2578#1 ------------------------------------------------------------ consensus_2578#0 CGTGGAGGCCAGGCAGGGCCAGGATGGAATGCCCCCCCCCACCTCTGCTACCTCGGNCCT 600 consensus_2578#1 ------------------------------------------------------------ consensus_2578#0 CACCAAACCCCCCAAGAAGCCCCTCACTCAAGGCACGCCCAGGACACCCGTTGGCAAGGT 660 consensus_2578#1 ------------------------------------------------------------ consensus_2578#0 GGGCCCCAAAGTCTCCAACGTCAGCGCCAAGAAGCCG 697 consensus_2578#1 ------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |