These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTGGTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACTCTTTTGTGATATAATAACGTATAGTGAAGC] [+] EMBL CA330064 [GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTGGTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACTCTTTTGTGATATAATAACGTATAGTGAAGC] consensusID : consensus_258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [GAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCCTCGTGCCGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT] [-] EMBL CA330944 [GAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCCTCGTGCCGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_258#0 GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTG 60 consensus_258#1 ------------------------------------------------------------ consensus_258#0 GTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATA 120 consensus_258#1 ----------------------------------------GAAGGCAATCGAGCACCATA 20 ******************** consensus_258#0 AATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAAC 180 consensus_258#1 AATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAAC 80 ************************************************************ consensus_258#0 TCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCA 240 consensus_258#1 TCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCA 140 ************************************************************ consensus_258#0 TAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTC 300 consensus_258#1 TAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTC 200 ************************************************************ consensus_258#0 TGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGA 360 consensus_258#1 TGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGA 260 ************************************************************ consensus_258#0 AAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACT 420 consensus_258#1 AAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCCTCGTGC 320 ***************************************************** consensus_258#0 CTTTTGTGATATAATAACGTATAGTGAAGC------------------------------ 450 consensus_258#1 CGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 380 * * * * * * * * consensus_258#0 ------------------------------------------------------------ consensus_258#1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 440 consensus_258#0 ------- consensus_258#1 TCTCTCT 447 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |