cluster # 258

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Takifugu rubripes
cluster # 258 cluster # 258 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_258#0 length = 450 sequences # 1

consensus_258#1 length = 447 sequences # 1

consensusID : consensus_258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTGGTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACTCTTTTGTGATATAATAACGTATAGTGAAGC]

[+] EMBL CA330064             [GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTGGTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACTCTTTTGTGATATAATAACGTATAGTGAAGC]




>consensus_258#0
GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTG
GTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATA
AATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAAC
TCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCA
TAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTC
TGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGA
AAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACT
CTTTTGTGATATAATAACGTATAGTGAAGC

consensusID : consensus_258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [GAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCCTCGTGCCGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT]

[-] EMBL CA330944             [GAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCCTCGTGCCGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT]




>consensus_258#1
GAAGGCAATCGAGCACCATAAATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGA
GCTGTGAACGCACGCCCAACTCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACA
AACAATTTTCGCACGATTCATAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCA
AATACGCTGTGAAACATTTCTGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCC
GGTACACAGACAGTGTGTGAAAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCG
CACGAGTCCAGGCCTCGTGCCGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_258#0      GCACGAGGAGAGAGAGAATAGTCTCGAGTTTTTTTTTTTTTTTTTTGATGTTGACAAGTG 60
consensus_258#1      ------------------------------------------------------------
                                                                                 

consensus_258#0      GTTTATTCAGCAGGAATGGTGAACAATTCATTTTTCTACAGAAGGCAATCGAGCACCATA 120
consensus_258#1      ----------------------------------------GAAGGCAATCGAGCACCATA 20
                                                             ********************

consensus_258#0      AATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAAC 180
consensus_258#1      AATAAACAGCGCTGTAATCAAACACGAAACATCCCGCAGAGCTGTGAACGCACGCCCAAC 80
                     ************************************************************

consensus_258#0      TCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCA 240
consensus_258#1      TCCCGCTTCTCTAGGCTTTGCCGATTACGCAGGTGACACAAACAATTTTCGCACGATTCA 140
                     ************************************************************

consensus_258#0      TAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTC 300
consensus_258#1      TAGTGATATAAAGCTGTAGCTCTTGGTTAGCACTGCTGCAAATACGCTGTGAAACATTTC 200
                     ************************************************************

consensus_258#0      TGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGA 360
consensus_258#1      TGTGGCTCACTTTACTATCCGTGACACAAGCTGGGTTCCCGGTACACAGACAGTGTGTGA 260
                     ************************************************************

consensus_258#0      AAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCTAACACT 420
consensus_258#1      AAGGTGGAATGAAGCTGCAGTGGCGTTCACACCGGGTTCGCACGAGTCCAGGCCTCGTGC 320
                     *****************************************************       

consensus_258#0      CTTTTGTGATATAATAACGTATAGTGAAGC------------------------------ 450
consensus_258#1      CGAATTCGGCACGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 380
                     *   *  *  *  *   *      *    *                              

consensus_258#0      ------------------------------------------------------------
consensus_258#1      TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 440
                                                                                 

consensus_258#0      -------
consensus_258#1      TCTCTCT 447

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)