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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 783 fasta sequence
[CTCGTCCGTGTCGCTCTGAGCACCATGACTTGGGAATATCGTGGATTTTCGTCCGTAAGGGGCATGGACCCCAGCACCCACAAAGTCAACAACCCTGCTGACATCTCAGTTATTGTGGTTTATTTTCTGGTTGTCCTCGGCGTAGGAATATGGGCTATGGTGCGCACCAACCGAGGGACCGTGGGCGGCTTCTTCCTTGCTGGGAGGAGCATGGTGTGGTGGCCCATTGGAGCGTCGCTCTTTGCCAGCAACATTGGAAGTGGCCACTTCGTGGGCGTCGCAGGCACGGCGGCGGCCGCGGGACTGGCCATCGGAGGGTTCGAATGGAACGCCCTGATCGTTGTGGTGTTTCTGGGCTGGCTCTTTGTGCCCATCTACATCAAAGCTGGGGTGGTCACCATGCCCGAGTACCTGACAAAGAGGTTTGGAGGACAGCGCATTCGTATCTATCTCTCCGTGCTCTCCCTCTTCTTGTACGTGGTTACCAAGATCTCGGCGGACATGTTCTCTGGGGCCATTTTCATCAACCAAGCTCTGGGGCTGAACATCTACCTGGCTGTCATCGCTCTTCTGCTGATCACTGCGCTGTACACCGTCACAGGTGGGCTGGCTGCTGTGATCTACACGGACACCTTACAGACCATCATCATGATTGTGGGATCCTTCATCCTCATGGGCTTTGCGTTTGCTGAAATGGGCAGCTTCGAGAACTTCCAGGAGCGATACATGGGCGCCATCCCGAAACACACAATCGGATTCCAGCCGAAGTGCTACGAGCCTCGG]
[+] EMBL CA588326 [CTGTTACGAGTCGCTCTGAGCACCATGACTTGGGAATATCGTGCCATTTAGTCCGTAAGGGGCATGGACCCCAGCACCCACAAAGTCAACAACCCTGCTGACATCTCAGTTATTGTGGTTTATTTTCTGGTTGTCCTCGGCGTAGGAATATGGGCTATGGTGCGCACCAACCGAGGGACCGTGGGCGGCTTCTTCCTTGCTGGGAGGAGCATGGTGTGGTGGCCCATTGGAGCGTCGCTCTTTGCCAGCAACATTGGAAGTGGCCACTTCGTGGGCGTCGCAGGCACGGCGGCGGCCGCGGGACTGGCCATCGGAGGGTTCGAATGGAACGCCCTGATCGTTGTGGTGTTTCTGGGCTGGCTCTTTGTGCCCATCTACATCAAAGCTGGGGTGGTCACCATGCCCGAGTACCTGACAAAGAGGTTTGGAGGACAGCGCATTCGTATCTATCTCTCCGTGCTCTCCCTCTTCTTGTACGTGGTTACCAAGATCTCGGCGGACATGTTCTCTGGGGCCATTTTCATCAACCAAGCTCTGGGGCTGAACATCTACCTGGCTGTCATCGCTCTTCTGCTGATCACTGCGCTGTACACCGTCACAGGTGGGCTGGCTGCTGTGATCTACACGGACACCTTACAGACCATCATCATGATTGTGGGATCCTTCATCCTCATGGGCTTTGCGTTTGCTGAAATGGGCAGCTTCGAGAACTTCCAGGAGCGCTACATGGGCGCCATCCCGAAACACACAATCGGATTCCAGCCGAAGTGCTACGAGCCTCGG]
[+] EMBL CA591089 [ TCGTCCATGTCGCTCTCAGCACCATGACTTGGGAATATCGTGGATTTTCGTCCGTAAGGGGCATGGACCCCAGCACCCACAAAGTCAACAACCCTGCTGACATCTCAGTTATTGTGGTTTATTTTCTGGTTGTCCTCGGCGTAGGAATATGGGCTATGGTGCGCACCAACCGAGGGACCGTGGGCGGCTTCTTCCTTGCTGGGAGGAGCATGGTGTGGTGGCCCATTGGAGCGTCGCTCTTTGCCAGCAACATTGGAAGTGGCCACTTCGTGGGCGTCGCAGGCACGGCGGCGGCCGCGGGACTGGCCATCGGAGGGTTCGAATGGAACGCCCTGATCGTTGTGGTGTTTCTGGGCTGGCTCTTTGTGCCCATCTACATCAAAGCTGGGGTGGTCACCATGCCCGAGTACCTGACAAAGAGGTTTGGAGGACAGCGCATTCGTATCTATCTCTC ]
[+] EMBL CA590155 [ TCGTCCATGTCGCTCTCAGCACCATGACTTGGGAATATCGTGGATTTTCGTCCGTAAGGGGCATGGACCCCAGCACCCACAAAGTCAACAACCCTGCTGACATCTCAGTTATTGTGGTTTATTTTCTGGTTGTCCTCGGCGTAGGAATATGGGCTATGGTGCGCACCAACCGAGGGACCGTGGGCGGCTTCTTCCTTGCTGGGAGGAGCATGGTGTGGTGGCCCATTGGAGCGTCGCTCTTTGCCAGCAACATTGGAAGTGGCCACTTCGTGGGCGTCGCAGGCACGGCGGCGGCCGCGGGACTGGCCATCGGAGGGTTCGAATGGAACGCCCTGATCGTTGTGGTGTTTCTGGGCTGGCTCTTTGTGCCCATCTACATCAAAGCTGGGGTGGTCACCATGCCCGAGTACCTGACAAAGAGGTTTGGAGGACAGCGCATTCGTATCTATCTCTCCGTGCTCTCCCTCTTCTTGTACGTGGTTACCAAGATCTCGGCGGACATGTTCTCTGGGGCCATTTTCATCAACCAAGCTCTGGGGCTGAACATCTACCTGGCTGTCATCGCTCTTCTGCTGATCACTGCGCTGTACACCGTCACAGGTGGGCTGGCTGCTGTGATCTACACGGACACCTTACAG ]
[+] EMBL CA589771 [ TCGTCCGTGTCGCTCTGAGCACCATGACTTGGGAATATCGTGGATTTTCGTCCGTAAGGGGCATGGACCCCAGCACCCACAAAGTCAACAACCCTGCTGACATCTCAGTTATTGTGGTTTATTTTCTGGTTGTCCTCGGCGTAGGAATATGGGCTATGGTGCGCACCAACCGAGGGACCGTGGGCGGCTTCTTCCTTGCTGGGAGGAGCATGGTGTGGTGGCCCATTGGAGCGTCGCTCTTTGCCAGCAACATTGGAAGTGGCCACTTCGTGGGCGTCGCAGGCACGGCGGCGGCCGCGGGACTGGCCATCGGAGGGTTCGAATGGAACGCCCTGATCGTTGTGGTGTTTCTGGGCTGGCTCTTTGTGCCCATCTACATCAAAGCTGGGGTGGTCACCATGCCCGACTACCTGACAAAGAGGTTTGGAGGACAGCGCATTCGTATCTATCTCTCCGTGCTCTCCCTCTTCTTGTACGTGGTTACCAAGATCTCGGCGGACATGTTCTCTGAGGCCATTTTCATCAACCAAGCTCTGGGGCTGAACATCTACCTGGGTGACATCGCTCTTCTGCTGATCACTGCGCTGAAC ]
[+] EMBL CA591526 [ TGACTTGGGAATATCCTTTATAATCGTCCGTAAGGGGCATGGACCCCAGCACCCACAAAGTCAACAACCCTGCTGACATCTCAGTTATTGTGGTTTATTTTCTGGTTGTCCTCGGCGTAGGAATATGGGCTATGGTGCGCACCAACCGAGGGACCGTGGGCGGCTTCTTCCTTGCTGGGAGGAGCATGGTGTGGTGGCCCATTGGAGCGTCGCTCTTTGCCAGCAACATTGGAAGTGGCCACTTCGTGGGCGTCGCAGGCACGGCGGCGGCCGCGGGACTGGCCATCGGAGGGTTCGAATGGAACGCCCTGATCGTTGTGGTGTTTCTGGGCTGGCTCTTTGTGCCCATCTACATCAAAGCTGGGGTGGTCACCATGCCCGAGTACCTGACAAAGAGGTTTGGAGGACAGCGCATTCGTATCTATCTCTCCGTGCTCTCCCTCTTCTTGTACGTGGTTACCAAGATCTCGGCGGACATGTTCTCTGGGGCCATTTTCATCAACCAAGCTCTGGGGCTGAACATCTACCTGGCTGNCATCGCTCTTCTGCTGATCACTGCGCTGTACACCGTCACAGGTGGGCTGGCTGCTGTGATCTACACGGACACCTTACAGACCATCATCATGATTGTGGGATCCTTCATCCTCATGGGCTTTGCGTTTGCTGAAATGGGCAGTTTCGAGAACTTCCAGGAGCGATAC ]
[+] EMBL FR0059681 [ GTAAGTGGCATGTACCCCAGCACCCACAAAGTCAACAGCCCTGCTGACATCTCAGTTATTGTGGTTTATTTTCTGGTTGTCCTCGGCGTAGGAATATGGGCTATGGTGCGCACCAACCGAGGGACCGTGGGCGGCTTCTTCCTTGCTGGGAGGAGCATGGTGTGGTGACCCATTGGAGCGTCGCTCTTTGCCAGCAACATTGGAAGTGGCCACTTCGTGGGCGTCGCAGGCACGGTGGCGGCCGGGGGACTGGCCATCGGAGGGTTCGAATGGAACGCCCTGATCGTTGTGGTGTTTCTGGGCTGGCTCTTTGTGCCCATCTACATCAAAGCTGGGG GGGCACCATGCCCGAGTACCTGACAAAGAGGTTTGGAGGACAG ]
[+] EMBL CA588150 [ GGGCTATGGTGCGCACCAACCGAGGGACCGTGGGCGGCTTCTTCCTTGCTGGGAGGAGCATGGTGCGGTGGCCCATTGGAGCGCCGCTCTTTGCCAGCAACATTGGAAGGGGCCACTTCGTGGGCGTCGCAGGCACGGCGGCGGCCGCGGGACTGGCCATCGGAGGGTCCGAAAGGAACGCCCTGACCGTAGTGGTGTTTCTGGGGTGGCTCGTTGTGCCCAGCTACATCAAAGCTGGGGGGGTCACCATGCCCGAGGACCAGACAAAGAGGTTTGGAGGACAGCGCATCCGGAGCGATCTCGCCGGGGTC ]
consensusID : consensus_2581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[TCGTCCATGTCGCTCTCAGCACCATGACTTGGGAATATCGTGGATTTTCGTCCGTAAGGGGCATGGACCCCAGCACCCACAAAGTCAACAACCCTGCTGACATCTCAGTTATTGTGGTTTATTTTCTGGTTGTCCTCGGCAGACTGTGAAAGGTTTTGTGGGACCGCTGTGGGCTGCAGCAACATTGCGTATCCCAAACTGGTGGTGGACCTCATGCCCAACGGGCTGCGAGGACTGATGCTGTCAGTGATGCTGGCCTCTCTGATGAGCTCGCTCACCTCCATCTTCAACAGCGCCAGTACGCTGTTCACCATGGACATCTACACAAAAGTTCGTAAAAGGGCCAGTGAGAAGGAGCTGATGATCGCTGGCAGAGTCTTTATCCTGGTCCTCATCGGGGTGAGCATAGCGTGGATCCCCATCGTGCAGTCTGCCCAGAGCGGCCAGCTCTTCGACTA]
[+] EMBL CA590044 [TCGTCCATGTCGCTCTCAGCACCATGACTTGGGAATATCGTGGATTTTCGTCCGTAAGGGGCATGGACCCCAGCACCCACAAAGTCAACAACCCTGCTGACATCTCAGTTATTGTGGTTTATTTTCTGGTTGTCCTCGGCAGACTGTGAAAGGTTTTGTGGGACCGCTGTGGGCTGCAGCAACATTGCGTATCCCAAACTGGTGGTGGACCTCATGCCCAACGGGCTGCGAGGACTGATGCTGTCAGTGATGCTGGCCTCTCTGATGAGCTCGCTCACCTCCATCTTCAACAGCGCCAGTACGCTGTTCACCATGGACATCTACACAAAAGTTCGTAAAAGGGCCAGTGAGAAGGAGCTGATGATCGCTGGCAGAGTCTTTATCCTGGTCCTCATCGGGGTGAGCATAGCGTGGATCCCCATCGTGCAGTCTGCCCAGAGCGGCCAGCTCTTCGACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2581#0 CTCGTCCGTGTCGCTCTGAGCACCATGACTTGGGAATATCGTGGATTTTCGTCCGTAAGG 60
consensus_2581#1 -TCGTCCATGTCGCTCTCAGCACCATGACTTGGGAATATCGTGGATTTTCGTCCGTAAGG 59
****** ********* ******************************************
consensus_2581#0 GGCATGGACCCCAGCACCCACAAAGTCAACAACCCTGCTGACATCTCAGTTATTGTGGTT 120
consensus_2581#1 GGCATGGACCCCAGCACCCACAAAGTCAACAACCCTGCTGACATCTCAGTTATTGTGGTT 119
************************************************************
consensus_2581#0 TATTTTCTGGTTGTCCTCGGCGTAGGAATATGGGCTATGGTGCGCACCAACCGAGGGACC 180
consensus_2581#1 TATTTTCTGGTTGTCCTCGGCA---GACTGTGAAAGGTTTTGTGGGACCGCTGTGGG-CT 175
********************* ** * ** * ** * * * * *** *
consensus_2581#0 GTGGGCGGCTTCTTCCTTGCTGGGAGGAGCATGGTGTGGTGGCCCATTGGAGCGTCGCTC 240
consensus_2581#1 GCAG-CAACATTGCGTATCCCAAACTGGTGGTGGACCTCATGCCCAACGG-GCTGCGAGG 233
* * * * * * * * *** ***** ** ** **
consensus_2581#0 TTTGCCAGCAACATTGGAAGTGGCCACTTCGTGGGCGTCGCAGGCACGGCGGCGGCCGCG 300
consensus_2581#1 ACTGATGCTGTCAGTGATGCTGGCCTCTCTGATGAGCTCGCT----CACCTCCATCTTCA 289
** ** ** ***** ** * * **** * * * * *
consensus_2581#0 GGACTGGCCATCGGAGGGTTCGAATGGAACGCCCTGATCGTTGTGGTGTTTCTGGGCTGG 360
consensus_2581#1 ACAGCG-CCAGTACGCTGTTCACCATGGACATCTACACAA-----AAGTTCGTAAAAGGG 343
* * *** **** * ** * * *** * **
consensus_2581#0 CTCTTTGTGCCCATCTACATCAAAGCTGGGGTGGTCACCATGCCCGAGTACCTGACAAAG 420
consensus_2581#1 CCAGTGAGAAGGAGCTG-ATGATCGCTGGCAGAGTCTTTAT--CCTGGTCCTCATCGGGG 400
* * * ** ** * ***** *** ** ** ** * * *
consensus_2581#0 AG-GTTTGGAGGACAGCGCATTCGTATCTATCTCTCCGTGCTCTCCCTCTTCTTGTACGT 479
consensus_2581#1 TGAGCATAGCGTGGATCCCCATCGTG-CAGTCTGCCCAGAGCGGCCAGCTCTTCGACTA- 458
* * * * * * * * **** * *** ** ** ** * *
consensus_2581#0 GGTTACCAAGATCTCGGCGGACATGTTCTCTGGGGCCATTTTCATCAACCAAGCTCTGGG 539
consensus_2581#1 ------------------------------------------------------------
consensus_2581#0 GCTGAACATCTACCTGGCTGTCATCGCTCTTCTGCTGATCACTGCGCTGTACACCGTCAC 599
consensus_2581#1 ------------------------------------------------------------
consensus_2581#0 AGGTGGGCTGGCTGCTGTGATCTACACGGACACCTTACAGACCATCATCATGATTGTGGG 659
consensus_2581#1 ------------------------------------------------------------
consensus_2581#0 ATCCTTCATCCTCATGGGCTTTGCGTTTGCTGAAATGGGCAGCTTCGAGAACTTCCAGGA 719
consensus_2581#1 ------------------------------------------------------------
consensus_2581#0 GCGATACATGGGCGCCATCCCGAAACACACAATCGGATTCCAGCCGAAGTGCTACGAGCC 779
consensus_2581#1 ------------------------------------------------------------
consensus_2581#0 TCGG 783
consensus_2581#1 ----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |