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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 819 fasta sequence
[CACTGCGGAACAGTAGGCGAGTGGAGCACTTATTATCCTGGGCAACTTTCATACGCTTGGA-AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAAATGCACCCTGACGAGCAGAGGTCGCACCGTCAACGTTAAATCCGCTACATGGAAGGTGCTGCACTGCTCAGGACAAGTGCGTGTGTATGAGAACCACACTGAGCCCAGT]
[+] EMBL CA846205 [CACTGTGGAACAGTAGGCGAGTGGAGCACTTATTATCCTGGGCAACTTTCATACGCTTGGA AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAAATGCACCCTGACGAGCAGAGGTCGCACCGTCAACGTTAAATCCGCTACATGGAAGGTGCTGCACTGCTCAGGACAAGTGCGTGTGTATGAGAACCACACTGAGCCCAGT]
[+] EMBL CA588648 [ GCGGTAAAGTAGGCGAGTGGAGCACTTATTATCCTGGGCAACTCCTTTACGCTTGGA AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAAATGCACCCTGACGAGCAGAGGTCGCACCGTCAACGTTAAATCCGCTACATGGAAGGTGCTGCACTGC ]
[+] EMBL CA589119 [ AACAGTAGGCGAGTGGAGCACTTATTATCCTGGGCAACTTTCATACGCTTGGA AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAAGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGC ]
[+] EMBL FR0058318 [ AGTGGAGCACTTATTATTTTTTTCAACTTTCATACGCTTGGAGGGGGGGATGCAACGCACTTAACAG TTCTCCCACGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGTAGGAAGGAGAAGTCGATAGA ]
[+] EMBL CA591143 [ GTGGAGCACTTATTATCCTGGGCAACTTTCATACGCTTGGA AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCCGAGGGGGTCTACCAGCTGGCTCAGGAACTGCCCCTGGCCCACAGGATCAGCTTCAGTCTGGACAAAGGCTCCCTAATGAGACTCGCCATCAGCTAACTGGGCATGAAGAAACTT ]
[+] EMBL FR0058423 [ CTGGGCAACTTTCATACGCTTGGA AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTC ]
consensusID : consensus_2582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence
[TGTTTGCTGCAGCCGCCGACAGGCCAGCAGCTGATCGGCCTCAGTAAACACTCCGGACGGAGGGATGCCTCTTCTCGTGTGTGTCGTGGGAGCAGAACCGGTTAATGACCAAGCGCTCGTCTCTCGCAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATGTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAAATGCACCCTGACGAGCAGAGGTCGCACC]
[+] EMBL CA589367 [TGTTTGCTGCAGCCGCCGACAGGCCAGCAGCTGATCGGCCTCAGTAAACACTCCGGACGGAGGGATGCCTCTTCTCGTGTGTGTCGTGGGAGCAGAACCGGTTAATGACCAAGCGCTCGTCTCTCGCAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCA ]
[+] EMBL BU806881 [ GCAGCTGATCGGCCTCAGTAAACACTCCGGACGGAGGGATGCCTCTTCTCGTGTGTGTCGTGGGAGCAGAACCGGTTAATGACCAAGCGCTCGTCTCTCGCAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATGTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAAATGCACCCTGACGAGCAGAGGTCGCACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2582#0 CACTGCGGAACAGTAGGCGAGTGGAGCACTTATTATCCTGGGCAACTTTCATACGCTTGG 60
consensus_2582#1 ------------------------------------------------------------
consensus_2582#0 AAGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTA 120
consensus_2582#1 ------------------------------------------------TGTTTGCTGCAG 12
* * *
consensus_2582#0 TTGTGTATTTCTCGACGG--GGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCA 178
consensus_2582#1 CCGCCGACAGGCCAGCAGCTGATCGGCCTCAGTAAACACTCCGGACGGAGGGATGCCTCT 72
* * * * * * *** * **** ** ** *** ***
consensus_2582#0 AGCCGT-TGCGTCCTGACATGGACACGGG--AATT-----GCACCAGAAAAGAAAAGGGT 230
consensus_2582#1 TCTCGTGTGTGTCGTGGGAGCAGAACCGGTTAATGACCAAGCGCTCGTCTCTCGCAGGGT 132
*** ** *** ** * ** ** *** ** * * *****
consensus_2582#0 GAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGA 290
consensus_2582#1 GAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATGTCGGCGCGGCAAGGA 192
******************************************** ***************
consensus_2582#0 GTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAG 350
consensus_2582#1 GTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAG 252
************************************************************
consensus_2582#0 TCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCT 410
consensus_2582#1 TCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCT 312
************************************************************
consensus_2582#0 GAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTC 470
consensus_2582#1 GAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTC 372
************************************************************
consensus_2582#0 CTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTA 530
consensus_2582#1 CTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTA 432
************************************************************
consensus_2582#0 TCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAG 590
consensus_2582#1 TCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAG 492
************************************************************
consensus_2582#0 CGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAG 650
consensus_2582#1 CGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAG 552
************************************************************
consensus_2582#0 AACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAA 710
consensus_2582#1 AACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAA 612
************************************************************
consensus_2582#0 ATGCACCCTGACGAGCAGAGGTCGCACCGTCAACGTTAAATCCGCTACATGGAAGGTGCT 770
consensus_2582#1 ATGCACCCTGACGAGCAGAGGTCGCACC-------------------------------- 640
****************************
consensus_2582#0 GCACTGCTCAGGACAAGTGCGTGTGTATGAGAACCACACTGAGCCCAGT 819
consensus_2582#1 -------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |