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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[GTTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGTTTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGACAAACCTCAGGCGACCCCCCGCAGAGGCTTTTCAGGTAAAGGCAAGAACATCACGACCAAACACGACGAGGTGACGTGCGGCCGCAAGAACACGGCGCGGA]
[+] EMBL CA333335 [GTTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGTTTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGACAAACCTCAGGCGACCCCCCGCAGAGGCTTTTCAGGTAAAGGCAAGAACATCACGACCAAACACGACGAGGTGACGTGCGGCCGCAAGAACACGGCGCGGA]
consensusID : consensus_2583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence
[TTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGCTTCCCGAGGATCAATTCTTGAGTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGAGGCTCCGGCCTGCTCTCTGAACGATGAGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGGTGAGGCAGCAACAGGAAGTGGAGCGAAACACAGAAGATCACGCGGGCTGCTTTCATGTTCCTGTTCCTCCTGTTCACCTGACACACAC]
[+] EMBL CA590726 [TTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGTTTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGGTGAGGCAGCAACAGGAAGTGGAGCGAAACACAGAAGATCACGCGGGCTGCTTTCATGTTCCTGTTCCTCCTGTTCACCTGACACACAC]
[+] EMBL FR0059196 [ CTTCCCGAGGATCAATTCTTGAGTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGAGGCTCCGGCCTGCTCTCTGAACGATGAGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGATACGAGCAGCGACCTGATGCTCGCGCAGATGC ]
consensusID : consensus_2583#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 422 fasta sequence
[TTTTCAAATAAGCTTTTCCCACTTGC-AAATACTGTTTTTGTTCGTATTAACATTTGTAAAACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGTCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA-GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCT-CTCTGAACGATGGGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTT]
[+] EMBL FR0061578 [TTTTCAAATAAGCTTTTCCCACTTGC AAATACTGTTTTTGTTCGTATTAACATTTGTAAAACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGCCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTTCCGGCTGCT CTCTGAACGATGTGATGAGTGGACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTG ]
[+] EMBL FR0060995 [ ATAAGCCTTTGCGGCTTTT AAATACTGTTTTTGCACGAATCAACATTTGAAAAACCTTCTATTGAGCCTGTCACACCGTGGTAAGTCACTGACACACACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGATAGCGATAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGAGTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGGCCCTGGACCCAGGCTGCACCGGCTGTGGCTCCGGTCTGCTCCTCTGAACGATGGGATGAGAGAACAGGTGGCCAGACAGCTGGCGGAAGAGGAGGGCCCCTTCCCTTTACTGGCGGATCCAACAGCCGATCTG ]
[+] EMBL FR0060072 [ AGCTTTTCCCACTTGCGAGATACTGTTTTTGTTCGTATTAACATTTGTAAAACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGTCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCT CTCTGAACGATGGGATGAGTGAACAGCTGGCCAGACAGCTGGAG ]
[+] EMBL FR0058820 [ AACCTTCTATTGTGCCTGTCACACCGTGCTAAGTCACTGACAGTTACATAATCCGCTCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGCTAAACCTCGCCACCATATTCGTTTCCCGAGGGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAGACACCAAAGAt ]
[+] EMBL FR0060946 [ ACACCGTGGGGAG CACTGACAGNCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCT CTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2583#0 ------------------------------------------------------------
consensus_2583#1 ------------------------------------------------------------
consensus_2583#2 TTTTCAAATAAGCTTTTCCCACTTGCAAATACTGTTTTTGTTCGTATTAACATTTGTAAA 60
consensus_2583#0 -----------------------------------------GTTGCGTGAACC-TTCACC 18
consensus_2583#1 ------------------------------------------TTGCGTGAACC-TTCACC 17
consensus_2583#2 ACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGTCACATAATCCGCCCTTC 120
* * * * ** * *
consensus_2583#0 GCTATTCAGCCGTTAGT-CGACTTTTCAAA-------TAAGCTTTTTCCACCATATTCGT 70
consensus_2583#1 GCTATTCAGCCGTTAGT-CGACTTTTCAAA-------TAAGCTTTTTCCACCATATTCGC 69
consensus_2583#2 GCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGT 180
** * * * * **** * *** * * * ************
consensus_2583#0 TTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAA 130
consensus_2583#1 TTCCCGAGGATCAATTCTTGAGTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAA 129
consensus_2583#2 TTCCCGAGGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAA 240
********************* ************* ************************
consensus_2583#0 CACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACG 190
consensus_2583#1 CACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGAGGCTCCGGCCTGCTCTCTGAACG 189
consensus_2583#2 CACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACG 300
************************************ ***********************
consensus_2583#0 ATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCAC 250
consensus_2583#1 ATGAGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCAC 249
consensus_2583#2 ATGGGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCAC 360
*** ********************************************************
consensus_2583#0 TGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACC 310
consensus_2583#1 TGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACC 309
consensus_2583#2 TGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACC 420
************************************************************
consensus_2583#0 TGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCC 370
consensus_2583#1 TGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCC 369
consensus_2583#2 TT---------------------------------------------------------- 422
*
consensus_2583#0 GGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGA 430
consensus_2583#1 GGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGA 429
consensus_2583#2 ------------------------------------------------------------
consensus_2583#0 TGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCA 490
consensus_2583#1 TGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCA 489
consensus_2583#2 ------------------------------------------------------------
consensus_2583#0 GACACGACCCCTACAGAGCCGACAAACCTCAGGCGACCCCCCGCAGAGGCTTTTCAGGTA 550
consensus_2583#1 GACACGACCCCTACAGAGCCGGTGA------GGCAGCAACAGGAAGTGG-------AGCG 536
consensus_2583#2 ------------------------------------------------------------
consensus_2583#0 AAGGCAAGAACATCACGACCAAACACGACGAGGTGACGTGCGGCCGCAAGAACACGGCGC 610
consensus_2583#1 AAACACAGAAGATCACG-CGGGCTGCTTTCATGTTCCTGTTCCTCCTGTTCACCTGACAC 595
consensus_2583#2 ------------------------------------------------------------
consensus_2583#0 GGA- 613
consensus_2583#1 ACAC 599
consensus_2583#2 ----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |