These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [GTTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGTTTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGACAAACCTCAGGCGACCCCCCGCAGAGGCTTTTCAGGTAAAGGCAAGAACATCACGACCAAACACGACGAGGTGACGTGCGGCCGCAAGAACACGGCGCGGA] [+] EMBL CA333335 [GTTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGTTTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGACAAACCTCAGGCGACCCCCCGCAGAGGCTTTTCAGGTAAAGGCAAGAACATCACGACCAAACACGACGAGGTGACGTGCGGCCGCAAGAACACGGCGCGGA] consensusID : consensus_2583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [TTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGCTTCCCGAGGATCAATTCTTGAGTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGAGGCTCCGGCCTGCTCTCTGAACGATGAGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGGTGAGGCAGCAACAGGAAGTGGAGCGAAACACAGAAGATCACGCGGGCTGCTTTCATGTTCCTGTTCCTCCTGTTCACCTGACACACAC] [+] EMBL CA590726 [TTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGTTTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGGTGAGGCAGCAACAGGAAGTGGAGCGAAACACAGAAGATCACGCGGGCTGCTTTCATGTTCCTGTTCCTCCTGTTCACCTGACACACAC] [+] EMBL FR0059196 [ CTTCCCGAGGATCAATTCTTGAGTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGAGGCTCCGGCCTGCTCTCTGAACGATGAGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGATACGAGCAGCGACCTGATGCTCGCGCAGATGC ] consensusID : consensus_2583#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 422 fasta sequence [TTTTCAAATAAGCTTTTCCCACTTGC-AAATACTGTTTTTGTTCGTATTAACATTTGTAAAACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGTCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA-GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCT-CTCTGAACGATGGGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTT] [+] EMBL FR0061578 [TTTTCAAATAAGCTTTTCCCACTTGC AAATACTGTTTTTGTTCGTATTAACATTTGTAAAACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGCCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTTCCGGCTGCT CTCTGAACGATGTGATGAGTGGACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTG ] [+] EMBL FR0060995 [ ATAAGCCTTTGCGGCTTTT AAATACTGTTTTTGCACGAATCAACATTTGAAAAACCTTCTATTGAGCCTGTCACACCGTGGTAAGTCACTGACACACACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGATAGCGATAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGAGTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGGCCCTGGACCCAGGCTGCACCGGCTGTGGCTCCGGTCTGCTCCTCTGAACGATGGGATGAGAGAACAGGTGGCCAGACAGCTGGCGGAAGAGGAGGGCCCCTTCCCTTTACTGGCGGATCCAACAGCCGATCTG ] [+] EMBL FR0060072 [ AGCTTTTCCCACTTGCGAGATACTGTTTTTGTTCGTATTAACATTTGTAAAACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGTCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCT CTCTGAACGATGGGATGAGTGAACAGCTGGCCAGACAGCTGGAG ] [+] EMBL FR0058820 [ AACCTTCTATTGTGCCTGTCACACCGTGCTAAGTCACTGACAGTTACATAATCCGCTCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGCTAAACCTCGCCACCATATTCGTTTCCCGAGGGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAGACACCAAAGAt ] [+] EMBL FR0060946 [ ACACCGTGGGGAG CACTGACAGNCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCT CTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2583#0 ------------------------------------------------------------ consensus_2583#1 ------------------------------------------------------------ consensus_2583#2 TTTTCAAATAAGCTTTTCCCACTTGCAAATACTGTTTTTGTTCGTATTAACATTTGTAAA 60 consensus_2583#0 -----------------------------------------GTTGCGTGAACC-TTCACC 18 consensus_2583#1 ------------------------------------------TTGCGTGAACC-TTCACC 17 consensus_2583#2 ACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGTCACATAATCCGCCCTTC 120 * * * * ** * * consensus_2583#0 GCTATTCAGCCGTTAGT-CGACTTTTCAAA-------TAAGCTTTTTCCACCATATTCGT 70 consensus_2583#1 GCTATTCAGCCGTTAGT-CGACTTTTCAAA-------TAAGCTTTTTCCACCATATTCGC 69 consensus_2583#2 GCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGT 180 ** * * * * **** * *** * * * ************ consensus_2583#0 TTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAA 130 consensus_2583#1 TTCCCGAGGATCAATTCTTGAGTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAA 129 consensus_2583#2 TTCCCGAGGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAA 240 ********************* ************* ************************ consensus_2583#0 CACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACG 190 consensus_2583#1 CACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGAGGCTCCGGCCTGCTCTCTGAACG 189 consensus_2583#2 CACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACG 300 ************************************ *********************** consensus_2583#0 ATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCAC 250 consensus_2583#1 ATGAGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCAC 249 consensus_2583#2 ATGGGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCAC 360 *** ******************************************************** consensus_2583#0 TGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACC 310 consensus_2583#1 TGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACC 309 consensus_2583#2 TGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACC 420 ************************************************************ consensus_2583#0 TGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCC 370 consensus_2583#1 TGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCC 369 consensus_2583#2 TT---------------------------------------------------------- 422 * consensus_2583#0 GGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGA 430 consensus_2583#1 GGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGA 429 consensus_2583#2 ------------------------------------------------------------ consensus_2583#0 TGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCA 490 consensus_2583#1 TGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCA 489 consensus_2583#2 ------------------------------------------------------------ consensus_2583#0 GACACGACCCCTACAGAGCCGACAAACCTCAGGCGACCCCCCGCAGAGGCTTTTCAGGTA 550 consensus_2583#1 GACACGACCCCTACAGAGCCGGTGA------GGCAGCAACAGGAAGTGG-------AGCG 536 consensus_2583#2 ------------------------------------------------------------ consensus_2583#0 AAGGCAAGAACATCACGACCAAACACGACGAGGTGACGTGCGGCCGCAAGAACACGGCGC 610 consensus_2583#1 AAACACAGAAGATCACG-CGGGCTGCTTTCATGTTCCTGTTCCTCCTGTTCACCTGACAC 595 consensus_2583#2 ------------------------------------------------------------ consensus_2583#0 GGA- 613 consensus_2583#1 ACAC 599 consensus_2583#2 ---- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |