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Takifugu rubripes
cluster # 2583 cluster # 2583       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2583#0 length = 613 sequences # 1  
consensus_2583#1 length = 599 sequences # 2  
consensus_2583#2 length = 422 sequences # 5  

consensusID : consensus_2583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence
                              [GTTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGTTTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGACAAACCTCAGGCGACCCCCCGCAGAGGCTTTTCAGGTAAAGGCAAGAACATCACGACCAAACACGACGAGGTGACGTGCGGCCGCAAGAACACGGCGCGGA]

[+] EMBL CA333335             [GTTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGTTTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGACAAACCTCAGGCGACCCCCCGCAGAGGCTTTTCAGGTAAAGGCAAGAACATCACGACCAAACACGACGAGGTGACGTGCGGCCGCAAGAACACGGCGCGGA]


>consensus_2583#0 GTTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCA CCATATTCGTTTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTC GCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGC TCTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCC TTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACG AGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGAC CAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAG AACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGG CAGGACACCAGACACGACCCCTACAGAGCCGACAAACCTCAGGCGACCCCCCGCAGAGGC TTTTCAGGTAAAGGCAAGAACATCACGACCAAACACGACGAGGTGACGTGCGGCCGCAAG AACACGGCGCGGA



consensusID : consensus_2583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence
                              [TTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGCTTCCCGAGGATCAATTCTTGAGTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGAGGCTCCGGCCTGCTCTCTGAACGATGAGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGGTGAGGCAGCAACAGGAAGTGGAGCGAAACACAGAAGATCACGCGGGCTGCTTTCATGTTCCTGTTCCTCCTGTTCACCTGACACACAC]

[+] EMBL CA590726             [TTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCACCATATTCGTTTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCAGACACGACCCCTACAGAGCCGGTGAGGCAGCAACAGGAAGTGGAGCGAAACACAGAAGATCACGCGGGCTGCTTTCATGTTCCTGTTCCTCCTGTTCACCTGACACACAC]
[+] EMBL FR0059196            [                                                                    CTTCCCGAGGATCAATTCTTGAGTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGAGGCTCCGGCCTGCTCTCTGAACGATGAGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGATACGAGCAGCGACCTGATGCTCGCGCAGATGC                                                                                                                                                                                                                                                                                ]


>consensus_2583#1 TTGCGTGAACCTTCACCGCTATTCAGCCGTTAGTCGACTTTTCAAATAAGCTTTTTCCAC CATATTCGCTTCCCGAGGATCAATTCTTGAGTTTCACAACTATGAACCAAATAGGACTCG CAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGAGGCTCCGGCCTGCT CTCTGAACGATGAGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCT TCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGA GCAGCGACCTGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACC AGCTCCGCCGGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGA ACTTCCGGATGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGC AGGACACCAGACACGACCCCTACAGAGCCGGTGAGGCAGCAACAGGAAGTGGAGCGAAAC ACAGAAGATCACGCGGGCTGCTTTCATGTTCCTGTTCCTCCTGTTCACCTGACACACAC



consensusID : consensus_2583#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 422
fasta sequence
                              [TTTTCAAATAAGCTTTTCCCACTTGC-AAATACTGTTTTTGTTCGTATTAACATTTGTAAAACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGTCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA-GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCT-CTCTGAACGATGGGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTT]

[+] EMBL FR0061578            [TTTTCAAATAAGCTTTTCCCACTTGC AAATACTGTTTTTGTTCGTATTAACATTTGTAAAACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGCCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTTCCGGCTGCT CTCTGAACGATGTGATGAGTGGACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTG                                                            ]
[+] EMBL FR0060995            [       ATAAGCCTTTGCGGCTTTT AAATACTGTTTTTGCACGAATCAACATTTGAAAAACCTTCTATTGAGCCTGTCACACCGTGGTAAGTCACTGACACACACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGATAGCGATAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGAGTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGGCCCTGGACCCAGGCTGCACCGGCTGTGGCTCCGGTCTGCTCCTCTGAACGATGGGATGAGAGAACAGGTGGCCAGACAGCTGGCGGAAGAGGAGGGCCCCTTCCCTTTACTGGCGGATCCAACAGCCGATCTG                                       ]
[+] EMBL FR0060072            [          AGCTTTTCCCACTTGCGAGATACTGTTTTTGTTCGTATTAACATTTGTAAAACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGTCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCT CTCTGAACGATGGGATGAGTGAACAGCTGGCCAGACAGCTGGAG                                                                                       ]
[+] EMBL FR0058820            [                                                            AACCTTCTATTGTGCCTGTCACACCGTGCTAAGTCACTGACAGTTACATAATCCGCTCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGCTAAACCTCGCCACCATATTCGTTTCCCGAGGGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAGACACCAAAGAt                                                                                                                                                                             ]
[+] EMBL FR0060946            [                                                                                ACACCGTGGGGAG CACTGACAGNCACATAATCCGCCCTTCGCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGTTTCCCGA GGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAACACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCT CTCTGAACGATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCACTGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACCTT]


>consensus_2583#2 TTTTCAAATAAGCTTTTCCCACTTGCAAATACTGTTTTTGTTCGTATTAACATTTGTAAA ACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGTCACATAATCCGCCCTTC GCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGT TTCCCGAGGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAA CACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACG ATGGGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCAC TGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACC TT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2583#0      ------------------------------------------------------------
consensus_2583#1      ------------------------------------------------------------
consensus_2583#2      TTTTCAAATAAGCTTTTCCCACTTGCAAATACTGTTTTTGTTCGTATTAACATTTGTAAA 60
                                                                                  

consensus_2583#0      -----------------------------------------GTTGCGTGAACC-TTCACC 18
consensus_2583#1      ------------------------------------------TTGCGTGAACC-TTCACC 17
consensus_2583#2      ACCTTCTATTGTGCCTGTCACACCGTGGTAAGTCACTGACAGTCACATAATCCGCCCTTC 120
                                                                *  * * * **   *  *

consensus_2583#0      GCTATTCAGCCGTTAGT-CGACTTTTCAAA-------TAAGCTTTTTCCACCATATTCGT 70
consensus_2583#1      GCTATTCAGCCGTTAGT-CGACTTTTCAAA-------TAAGCTTTTTCCACCATATTCGC 69
consensus_2583#2      GCCAAGAATCTTCCACCGCGACGTGCTAAAGTTAGCGTTAAACCTCGCCACCATATTCGT 180
                      ** *   * *    *   **** *   ***       * *    *  ************ 

consensus_2583#0      TTCCCGAGGATCAATTCTTGATTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAA 130
consensus_2583#1      TTCCCGAGGATCAATTCTTGAGTTTCACAACTATGAACCAAATAGGACTCGCAACAGAAA 129
consensus_2583#2      TTCCCGAGGATCAATTCTTGATTTTCACAACTATGGACCAAATAGGACTCGCAACAGAAA 240
                      ********************* ************* ************************

consensus_2583#0      CACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACG 190
consensus_2583#1      CACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGAGGCTCCGGCCTGCTCTCTGAACG 189
consensus_2583#2      CACCAAAGAGCCCCTGGGGCCAGGCTGCACCGGCGGTGGCTCCGGCCTGCTCTCTGAACG 300
                      ************************************ ***********************

consensus_2583#0      ATGTGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCAC 250
consensus_2583#1      ATGAGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCAC 249
consensus_2583#2      ATGGGATGAGTGAACAGCTGGCCAGACAGCTGGAGGAAGAGGAGGGCCCCTTCCCTTCAC 360
                      *** ********************************************************

consensus_2583#0      TGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACC 310
consensus_2583#1      TGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACC 309
consensus_2583#2      TGGCGGATCCAACAGCCGATCTGCTGCTGTCGGACGAAGTCGGCGACACGAGCAGCGACC 420
                      ************************************************************

consensus_2583#0      TGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCC 370
consensus_2583#1      TGATGCTCGCGCAGATGCTGCAGATGCAGTTTGACCGGGAGTTTGATGACCAGCTCCGCC 369
consensus_2583#2      TT---------------------------------------------------------- 422
                      *                                                           

consensus_2583#0      GGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGA 430
consensus_2583#1      GGGAGGAGAAGAAATTCAATGGTGACAGTAAAGTGTCCATCTCCTTCGAGAACTTCCGGA 429
consensus_2583#2      ------------------------------------------------------------
                                                                                  

consensus_2583#0      TGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCA 490
consensus_2583#1      TGGTTCATCCTTATGAAGACAGTGAGAGTTCTGAGGATGAGGTGGACTGGCAGGACACCA 489
consensus_2583#2      ------------------------------------------------------------
                                                                                  

consensus_2583#0      GACACGACCCCTACAGAGCCGACAAACCTCAGGCGACCCCCCGCAGAGGCTTTTCAGGTA 550
consensus_2583#1      GACACGACCCCTACAGAGCCGGTGA------GGCAGCAACAGGAAGTGG-------AGCG 536
consensus_2583#2      ------------------------------------------------------------
                                                                                  

consensus_2583#0      AAGGCAAGAACATCACGACCAAACACGACGAGGTGACGTGCGGCCGCAAGAACACGGCGC 610
consensus_2583#1      AAACACAGAAGATCACG-CGGGCTGCTTTCATGTTCCTGTTCCTCCTGTTCACCTGACAC 595
consensus_2583#2      ------------------------------------------------------------
                                                                                  

consensus_2583#0      GGA- 613
consensus_2583#1      ACAC 599
consensus_2583#2      ----
                          




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)