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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence
[ACCGTTCAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCCTTAACATGTTCTGAAGATGGAACATTCACACCAGGTCTCCCTCAATGTACTGAGGTTGAGTGTGCTGACCCAAAAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCGCCCTCCCCATAAATACCTGGCTACAGTGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGGGACGCCAGCATGGAATGTGGCCTGAATGGTCAGTGGATGCCAGGAATTCCTAAATGTACAGCAGTAACTTGCAGTCCCCCATCAACGATTACAAGCGGCACTTTCAGCCCACAGAAACCTTTGTATCAGTACCAAGAGACGGTAGCGTACAGTTGTGACCAGGGTTTTACTCTGAGTGGATCTAAATCACTGTCGTGTTCACTTGATGGAACCTTTAACGGTTCTCCGCCAACGTGTAACAAGAAGACTTGTGGTTCTGCTGGGCAGGTGGACAATGGAGAAATAGAGTATCTTCCAGGGAAGGAGTTTGGTGATAAACTTGTGGTTACTTGCAACCCTGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAGGGCTGGTTGGGCAGGTTACCTGAATGTGAAGAGGTTGAGTGTTCACACCCAAAAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCACCCTCCCCATAAATACCTGGATACAGTGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGNGACGCCACCATGGTATGTAGCCTGAATGGTCAGTGGACGCCA]
[+] EMBL CA846248 [ACCGTTCAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCCTTAACATGTTCTGAAGATGGAACATTCACACCAGGTCTCCCTCAATGTACTGAGGTTGAGTGTGCTGACCCAAAAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCGCCCTCCCCATAAATACCTGGCTACAGTGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGGGACGCCAGCATGGAATGTGGCCTGAATGGTCAGTGGATGCCAGGAATTCCTAAATGTACAGCAGTAACTTGCAGTCCCCCATCAACGATTACAAGCGGCACTTTCAGCCCACAGAAACCTTTGTATCAGTACCTAGAGACGGTAGCGTACAGTTGTGACCAGGGTTTTACTCTGAGTGGATCTAAATCACTGTCGTGTTCACTTGATGGAACCTTTAACGGTTCTCCGCCAACGTGTAACAAGAAGACTTGTGGTTCTGCTGGGCAGGTGGACAATGGAGAAATAGAGTATCTTCCAGGGAAGGAGTTTGGTGATAAACTTGTGGTTACTTGCAACCCTGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAGGGCTGGTTGGGCAGGTTACCTGAATGTGAAGAGGTTGAGTGTTCACACCCAAAAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCACCCTCCCCATAAATACCTGGATACAGTGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGNGACGCCACCATGGTATGTAGCCTGAATGGTCAGTGGACGCCA]
[+] EMBL CA340901 [ GATGGAACATTCACACCAGGTCTCCCTCAATGTACTGAGGTTGAGTGTGCTGACCCAAAAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCGCCCTCCCCATAAATACCTGGCTACAGTGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGGGACGCCAGCATGGAATGTGGCCTGAATGGTCAGTGGATGCCAGGAATTCCTAAATGTACAGCAGTCACTTGCAGTCCCCCATCAACGATTACAAGCGGCACTTTCAGCCCACAGAAACCTTTGTATCAGTACCAAGAGACGGTAGCGTACAGTTGTGACCAGGGTTTTACTCTGAGTGGATCTAAATCACTGTCGTGTTCACTTGATGGAACCTTTAACGGTTCTCCGCCAACGTGTAACAAGAAGACTTGTGGTTCTGCTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGGGAAGGAGTTTGGTGATAAACTTGTGGTTACTTGCAACCTTGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAGGGCTGGTTGGGCAGG ]
consensusID : consensus_2588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 695 fasta sequence
[TTGTAATATCGACTGGACGATCCCCAGTTTGTTTCCAGAGCTTCGCTAATCATTGCGACACTGCGTTCGCTTCTGCTGGCATCGCGGATCTCCCCTCTCAGCTCGATCCCATCATGGAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACTGCAGGAGGGGTTGGGGTTGTTACGTGTACTGCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTCCTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTT-GGTGATAAAATTGTGGTTACTTGCAACCCCGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAAGGCTGGTTGGGCAGGTTACCTGAATGTGAAGTGGTGACATGTGACCCACCTGCTGGCATTCCCAATGGCCTCTTCAGCCCTGGTAAGGACGTATATAATTATCGAGAAGTTGTACAGTACAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCAGTAACATGTTCTGAAGATGGAACATTCACACCA]
[+] EMBL CA332731 [TTGTAATATCGACTGGACGATCCCCAGTTTGTTTCCAGAGCTTCGCTAATCATTGCCACACTGCGTCCTCTTCTACTGTCA CTCTGA TTCCCTCTCAGTTCGATCCCATCATGGAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAAACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGTCATTCTTTTGACTACATTCCCAGATGGGAGCAGGGCTACTTTTGTCTGCAGTTTGGGCCACACTACTGCAGGAGGGTCCGGGGTTGTTACGTGTACTGCTGGGACCTGGAGTCAAGT ]
[+] EMBL BU808344 [ GACACTGCGTTCGCTTCTGCTGGCATCGCGGATCTCCCCTCTCAGCTCGATCCCATCATGGAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACTGCAGGAGGGGTTGGGGTTGTTACGTGTACTGCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTCCTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTT GGTGATAAAATTGTGGTTACTTGCAACCCCGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAAGGCTGGTTGGGCAGGTTACCTGAATGTGAAGCGGTGACATGTGACCCACCTGCTGGCATTCCCAATGGCCTCTTCAGCCCTGGTTAGGACGTATATAATTATCGAGAAGTTGTACAGTACAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCAGTAACATGTTCTGAAGATGGAACATTCACACCA]
[+] EMBL BU808291 [ GTTCGCTTCTGCTGGCATCGCGGATCTCCCCTCTCAGCTCGATCCCATCATGGAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACTGCAGGAGGGGTTGGGGTTGTTACGTGTACTGCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTCCTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTT GGTGATAAAATTGTGGTTACTTGCAACCCCGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAAGGCTGGTTGGGCAGGTTACCTGAATGTGAAGTGGTGACATGTGACCCACCTGCTGGCATTCCCAATGGCCTCTTCAGCCCTGTTAAGGACGTATATAATTATCGAGAAGTTGTACAGTACAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCAGTAACATGTTCTGAAGATGGAACATTCACACCA]
[+] EMBL CA589582 [ TTCGCTTCTGCTGGCATCGCGGATCTCCCCTCTCAGCTCGGTCCCATCATGGAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAAACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGAGCAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACTGCAGGAGGGTCCAGGGTTGTTACGTGTACTGCTGGGACCTGGAGTCAAGTGACGCTACGCTGCGAGAAGAAGATTTGTGGTTCTGCTGGGCAGGTGGACAATGGAGAAATAGAGTATCTTCCAGGGAATGAGTTT GGTGATAGAATTGTGGTTACTTGCAACCTCGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAGATCAAGGCTGGTTGGGCAGGTTACCTGTATGTGAAGTGGTGACATGTGACCTACCTGCTGGCATTCCCAATGGCCTCTTCAGCCCTGTTAAGGACGTATATAATTATCGAGAAGTTGTACAGTACAGTTGTACAGGGGACTTT ]
[+] EMBL BU807821 [ GAGATCACTCGCACCATTATTGCAGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACTGCAGGAGGGGTTGGGGTTGTTACGTGTACTGCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTCCTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTT GGTGATAAAATTGTGGTTACTTGCAACCCCGGTTTTAGGTTGGTGGGGAAACGTGAACTCGCCTGTGGAGATCAAGGCTGGTTGGGCAGGTTACCTGAATGTGAAGTGGTGACATGTGACCCACCTGCTGGCATTCCCAATGGCCTCTTCAGCCCTGGTAAGGACGTATATAATTATCGAGAAGTTGTACAGTACAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCAGTAACA ]
[+] EMBL FR0059099 [ GGGGTCTGTCTTGGCCTTGTGGTGGCGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCAAACATGGATTTGAAGGACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTACTTTTGTCTGCAGTTTGGGCTACACTACGGCAGGAGGGGTTGGGGTTGTTACGTGTACTGCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTCCTGGGCAGGGGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTTGGGTGATAAAATTGTGGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2588#0 ACCGTTCAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCCTTAACATGTTCTGA 60
consensus_2588#1 ------------------------------------------------------------
consensus_2588#0 AGATGGAACATTCACACCAGGTCTCCCTCAATGTACTGAGGTTGAGTGTGCTGACCCAAA 120
consensus_2588#1 ------------------TTGTAATATCGACTGGAC-GATCCCCAGTTTGTT--TCCAGA 39
** * ** ** ** *** ** * *** *
consensus_2588#0 AGTTGCCAATGGTGAATGGGTCTCTGGTTCTCGCCCTCCCCATAAATACCTGGCTACAGT 180
consensus_2588#1 GCTT--CGCTAATCATTGCGACACTG-CGTTCGCTTCTGCTGGCATCGCGGATCTCCCCT 96
** * * * * ** * * *** **** * * * ** * *
consensus_2588#0 GACATATCGCTGCAATGCTGGTTATAAAATGGAAGGGGACGCCAGCATGG-AATGTGGCC 239
consensus_2588#1 CTCAGCTCGATCCCATCATGGAGATCACTCG--------CACCATTATTGCAGTCTGTCT 148
** *** * * ** *** ** * * * *** ** * * * ** *
consensus_2588#0 TGAATGGTCAGTGGATGCCAGGAATTCCTAAATGTACAGCAGTAACTTGCAGTCCCCCAT 299
consensus_2588#1 TGGCCTTGTGGTGG-CGTCCCAAGCCCAAGACTGTTCAAGACCTGTTCCAGGACCA--AA 205
** **** * * * * * *** ** * * * ** *
consensus_2588#0 CAACGATTACAAGCGGCACTTTCAGCCCACAGAA---ACCTTTGTATCAGTACCAAGAGA 356
consensus_2588#1 CATGGATTTGAAG-GACTCTGACATTGTTTTGACTACATTCCCAGATGGGCACAGGGCTA 264
** **** *** * * ** ** ** * ** * ** * *
consensus_2588#0 CGGTAGCGTACAGTTGTGACCAGGGTTTTACTCTGAGTGGATCTAAATCACTGTCGTGTT 416
consensus_2588#1 CTTTTGTCTGCAGTTTGGGCTACA---CTACTGCAGGAGGGGTTGGG--GTTGTTACGTG 319
* * * * ***** * * * **** * ** * *** **
consensus_2588#0 CACTTGATGGAACCTTTAACGGTTCTCCGCCAACGTGTAACAAGAAGACTTGTGGTTCTG 476
consensus_2588#1 TACT-GCTGGGAGCTGGAGTCAAGTGACGCTACAATGCAAGAAGAAGATTTGTGGTTCTC 378
*** * *** * ** * *** * ** ** ******* **********
consensus_2588#0 CTGGGCAGGTGGACAATGGAGAAATAGAGTATCTTCCAGGGAAGGAGTTTGGTGATAAAC 536
consensus_2588#1 CTGGGCAGGTGGACAATGGAGAAATAAAGTATCTTTCAGAGAATGAGTTTGGTGATAAAA 438
************************** ******** *** *** ***************
consensus_2588#0 TTGTGGTTACTTGCAACCCTGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAG 596
consensus_2588#1 TTGTGGTTACTTGCAACCCCGGTTTTAGGTTGGTGGGGAAACGTGAACTCACCTGTGGAG 498
******************* ****************************************
consensus_2588#0 ATCAGGGCTGGTTGGGCAGGTTACCTGAATGTGAAGAGGTTGAGTGT---TCACACCCAA 653
consensus_2588#1 ATCAAGGCTGGTTGGGCAGGTTACCTGAATGTGAAGTGGTGACATGTGACCCACCTGCTG 558
**** ******************************* *** *** *** *
consensus_2588#0 AAGTTGCCAATGGTGAATGGGTCTCTGGTTCTCACCCTCCCCATAAATACCTGGATACAG 713
consensus_2588#1 GCATTCCCAATGGCCTCTTCAGCCCTGGTAAGGACGT---ATATAATTATCGAGAAGTTG 615
** ******* * * ***** ** **** ** * ** *
consensus_2588#0 TGACATATCGCTGCAATGCTGGTTATAAAATGGAAGGNGACGCCACCATGGTATGTAGCC 773
consensus_2588#1 TACAGTACAGTTGTACAGGGGACTTTACCCTCAGTGGATCCAAATCAGTAACATGTTCTG 675
* ** * ** * * * * ** * ** * * * ****
consensus_2588#0 TGAATGGTCAGTGGACGCCA 793
consensus_2588#1 AAGATGGAACATTCACACCA 695
**** * ** ***
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |