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Takifugu rubripes
cluster # 2593 cluster # 2593       Sequences # 8       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2593#0 length = 642 sequences # 3  
 consensus_2593#1 length = 445 sequences # 5  
consensusID : consensus_2593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 642
fasta sequence 
                              [CCAGTCATTGTCGGAGCAAAAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCCAGGACAGGAAAAGCAGCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTGCTGCTGGTGGTGCACCTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGATGATCTGCTGCAGAAAATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGTAGCTGCTAAGTGTTATTATTATCACGCCCGAGGCTACGAGTTCCTGAACCAG]

[+] EMBL BU806566             [CCAGTCATTGTCGGAGCAAAAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCCAGGACAGGAAAAGCAGCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTGCTGCTGGTGGTGCACCTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGATGATCTGCTGCAGAAAATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGTAGCTGCTAAGTGTTATTATTATCACGCCCGAGTCTACGAGTTC         ]
[+] EMBL BU808192             [ CAGTCATTGTCGGAGCAAAAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCCAGGACAGGAAAAGCAGCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTGCTGCTGGTGGTGCACCTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGATGATCTGCTGCAGAAAATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGTAGCTGCTAAGTGTTATTATTATCACGCCCGA                     ]
[+] EMBL BU808248             [                                                                             GTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTTTTTTGTGTTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCCAGGACAGGAAAAGCAGCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTGCTGCTGGTGGTGCACCTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGATGATCTGCTGCAGAAAATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGGAGCTGCTAAGTGTTATTATTATCACGCCCCGAGTTACGAGTTCCTGAACCAG]




>consensus_2593#0
CCAGTCATTGTCGGAGCAAAAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAA
GCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTG
GAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTC
ACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAG
CCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACT
AATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTC
CTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCC
AGGACAGGAAAAGCAGCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTG
CTGCTGGTGGTGCACCTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGAT
GATCTGCTGCAGAAAATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGTAGCTGCTAAG
TGTTATTATTATCACGCCCGAGGCTACGAGTTCCTGAACCAG

consensusID : consensus_2593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 445
fasta sequence 
                              [GTGTTGGGGGACCAGAACCTGCTGGAAGTTCTGATTCCTCTCTGACTCTCGGCGCTTTGTCTTCCAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACG]

[+] EMBL BU805819             [GTGTTGGGGGACCAGAACCTGCTGGAAGTTCTGATTCCTCTCTGACTCTCGGCGCTTTGTCTTCCAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGATGGAGATGGCCGACG]
[+] EMBL FR0060274            [                                                                      TCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGGCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAAACCATCTGTGGCTTTTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTGGAGGAGCCGA               ]
[+] EMBL FR0059189            [                                                                                             CGGAGGGACTTAGCGGGTCGGGACCGCGAGTCCAAAGGGGAGAAGTCAAAGGAGACCGCCCCGCACCACGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGGGCTCTACGGGCC                                                                                                                                  ]
[+] EMBL FR0063901            [                                                                                                        AGCGGG CGGGACC CGAGTCCAAATTTG GAAGGCAAAGGAGACCGCCCGGGAGGATGTGGAGATGCCGGAGGAGGAGACGCCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGGGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGGGAATAAAACCATCTGTGGTTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTTCCTG                        ]
[+] EMBL FR0063936            [                                                                                                          CGGGTCGGGACCGCGAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAGGAGACGGCTAGCGCCGCTAAGCTGCCCGGA AGCTGGATAGTGTCACCCTGGACGATATCAAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTCCGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGGCTGAACACTAATGTTGTGAATAAAACCATCTGGGGTTTCTTCACCAACAACAGC                                                       ]




>consensus_2593#1
GTGTTGGGGGACCAGAACCTGCTGGAAGTTCTGATTCCTCTCTGACTCTCGGCGCTTTGT
CTTCCAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGC
GAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAG
GAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATC
AAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTC
CGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAA
ACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTG
GAGGAGCCGATGGAGATGGCCGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2593#0      --------------------------------------CCAGTCATTGTCGGAGCAAA-- 20
consensus_2593#1      GTGTTGGGGGACCAGAACCTGCTGGAAGTTCTGATTCCTCTCTGACTCTCGGCGCTTTGT 60
                                                             *  * * * **** **     

consensus_2593#0      -----AGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGC 75
consensus_2593#1      CTTCCAGACATCATGAAGGAGACTGCAGCGAAGCGGAGGGACAAAGCGGGTCGGGACCGC 120
                           *******************************************************

consensus_2593#0      GAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAG 135
consensus_2593#1      GAGTCCAAAGCCGAGAAGTCAAAGGAGACCGCCCCGCAGGATGTGGAGATGCCGGAGGAG 180
                      ************************************************************

consensus_2593#0      GAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATC 195
consensus_2593#1      GAGACGGCTAGCGCCGCTAAGCTGCCCGGAGAGCTGGATAGTGTCACCCTGGACGATATC 240
                      ************************************************************

consensus_2593#0      AAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTC 255
consensus_2593#1      AAGGAGCACGTGAAGCAGATCGAGAAGGCGGTGTCTGGGAAGGAGCCGCGCTTCGTCCTC 300
                      ************************************************************

consensus_2593#0      CGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAA 315
consensus_2593#1      CGTGCTCTACGGGCCTTACCCTCCACCAGCCGCCGCCTCAACACTAATGTTGTGAATAAA 360
                      ************************************************************

consensus_2593#0      ACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTG 375
consensus_2593#1      ACCATCTGTGGCTTCTTCACCAACAACAGCACCACCAGGGACTTCCTGCTCAGCTTCCTG 420
                      ************************************************************

consensus_2593#0      GAGGAGCCGATGGAGATGGCCGACGGAGACGTCCAGTTTCGTCCCAGGACAGGAAAAGCA 435
consensus_2593#1      GAGGAGCCGATGGAGATGGCCGACG----------------------------------- 445
                      *************************                                   

consensus_2593#0      GCCTCGGCCCCTCTGCTGCCGGAGGTGGAGGCTTACCTGCAGCTGCTGCTGGTGGTGCAC 495
consensus_2593#1      ------------------------------------------------------------
                                                                                  

consensus_2593#0      CTGACCAACAATAAGAGATACACGGAGGCTCAGAAAGTGTCAGATGATCTGCTGCAGAAA 555
consensus_2593#1      ------------------------------------------------------------
                                                                                  

consensus_2593#0      ATTGGCTCCAAGAACCGCAGAGCTCTGGACCTGGTAGCTGCTAAGTGTTATTATTATCAC 615
consensus_2593#1      ------------------------------------------------------------
                                                                                  

consensus_2593#0      GCCCGAGGCTACGAGTTCCTGAACCAG 642
consensus_2593#1      ---------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)