|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 920 fasta sequence
[ACTTTGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGGCTTGAAGAAGATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACCAGCAAACTGTCCAGCCAGGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAAAGGTACAAAGAAGACGC-CGAGAAGACCATGTCTCACTACGTACCAGTGCTGGACACTCCAGAGATGCAGCGGGTCCGCGAGAACCAGAAGAACTTCAGCACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTGGACACGCCCGAGATGAGGCGTGTCAGGGAGACCCAGCGCATCATTTCTGGAGTGAGATATCACGAGGACTTTGAGAAGAACAAGGGCAGCTTCACTCCCACCACCTCTGACCTGGTGACAGAGCGTGTGAAGAGGAACACGCAGGACATCAGCGACATCAGCTACCGCGGCATCCAGAGGCGCGT]
[+] EMBL BU805084 [ACTTTGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGGCTTGAAGAAGATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACCAGCAAACTGTCCAGCCAGGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAAAGGTACAAAGAAGACGC TGAGAAGACCATGTCTCACTACGTACCAGTGC ]
[+] EMBL BU806829 [ AGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAAAGGTACAAAGAAGACGC TGAGAAGACCATGTCTCACTACGTACCAGTGCTGGACACTCCAGAGATGCAGCGGGTCCGCGAGAACCAGAAGAACTTCAGCACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTGGACACGCCCGAGATGAGGCGCGTCAGGGAGACCCAGCGCATCATTTCTGGAGTGAGAT ]
[+] EMBL BU806575 [ CAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAAAGGTACAAAGAAGACGC CGAGAAGACCATGTCTCACTACGTACCAGTGCTGGACACTCCAGAGATGCAGCGGGTCCGCGAGAACCAGAAGAACTTCAGCACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTGGACACGCCCGAGATGAGGCGTGTCAGGGAGACCCAGCGCATCATTTCTGGAGTGAGATATCACGAGGACTTTGAGAAGAACAAGGGCAGCTTCACTCCCACCACCTCTGACCTGGTGACAGAGCGTG ]
[+] EMBL FR0063352 [ CACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAGAAGGTACAAAGAAGACGC CGAGAAGACCATGTCTCACTACGTACCAGTGCTGGACACTCCAGAGATGCAGCGGGTCCGCGAGAACCAGAAGAACTTCAGCACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTGGACACGCCCGAGATGAGGGGTGTC ]
[+] EMBL FR0064016 [ GATGAAGAACATCGTCAGCCAGAAAAGGCACAAAGAAGACGCGCGAGAAGACCATGTCTCACTACGTACCAGCGCTGGACACTCCAGAGAT CAGCGGGTCCGCGAGAACCAGAAGAACTTCAGCACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTGGACACGCCCGAGATGAGGCGTGTCAGGGAGACCCAGCGCATCATTTCTGGAGTGAGATATCACGAGGACTTTGAGAAGAACAAGGGCAGCTTCACTCCCACCACCTCTGACCTGGTGACAGAGCGTGTGAAGAGGAACACGCAGGACATCAGCGACATCAGCTACCGCGGCATCCAGAGGCGCGT]
consensusID : consensus_2595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 677 fasta sequence
[TGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGACTTGAAGAAGATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACCAGCAAACTGTCCAGCCAGTACTGCTACAAGAAGAAATTTGAGGAGAGTAAGGGTCACTACCATGTGATTCCCGACACACCAGAACAGCTTCATCACAAGGAGGCTTCTGAACTTCAGAGTAATGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGC-TTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAA]
[+] EMBL BU805125 [TGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGACTTGAAGAAGATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACCAGCAAACTGTCCAGCCAGTACTGCTACAAGAAGAAATTTGAGGAGAGTAAGGGTCACTACCATGTGATTCCCGACACACCAGAACAGCTTCATCACAAGGAGGCTTCTGAACTTCAGAGTAATGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGC TTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTG ]
[+] EMBL FR0063375 [ CACGGCCTGAGCACCAGCAAACTGTCCAGCCAGTACTGCTACAAGAAGAAATTTGAGGAGAGTAAGGGTCACTACCATGTGATTCCCGACACACCAGAACAGCTTCATCACAAGGAGGCTTCTGAACTTCAGAGGAATGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGCAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACATGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTTGCCCACAGACACG ]
[+] EMBL FR0063854 [ GAGGCTTCTGAACTTCAGAGTAATGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAGACACCCACATATGTGAC GCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGGAAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAACTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTGGAGCAGGAGATCAAGGGTAAGGGAATGTTGGC TTTGGCCACAGACACGCCAGACTTCATGAGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATGGACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATGAAGAACATCGTCAGCCAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2595#0 ACTTTGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGGCTTGAAGAAG 60
consensus_2595#1 ----TGAAGGATGCTAATACTCTGGCCAGTGAGGTGAAGTACAAGGGAGACTTGAAGAAG 56
********************************************* **********
consensus_2595#0 ATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACC 120
consensus_2595#1 ATCCACAAGCCTGTTTCTGACATGTCCGAGTCTCTGTCCATGCAGCACGGCCTGAGCACC 116
************************************************************
consensus_2595#0 AGCAAACTGTCCAGCCAG------------------------------------------ 138
consensus_2595#1 AGCAAACTGTCCAGCCAGTACTGCTACAAGAAGAAATTTGAGGAGAGTAAGGGTCACTAC 176
******************
consensus_2595#0 ------------------------------------------------------------
consensus_2595#1 CATGTGATTCCCGACACACCAGAACAGCTTCATCACAAGGAGGCTTCTGAACTTCAGAGT 236
consensus_2595#0 ---GTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAG 195
consensus_2595#1 AATGTGAAATACAAAGAGAAGTATGAGAAGGAGAAGGGCAGGGCCATGCTGGACTTTGAG 296
*********************************************************
consensus_2595#0 ACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGG 255
consensus_2595#1 ACACCCACATATGTGACGGCTAAGGAGGCCCAGCACATGCAGAGCCAGAAAGAGTACAGG 356
************************************************************
consensus_2595#0 AAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAA 315
consensus_2595#1 AAGGATCTAGAAGAGGGGGTGAAGGGTAAAGGTCTAACTGTACTGGAGGAAACTCCGGAA 416
************************************************************
consensus_2595#0 CTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTG 375
consensus_2595#1 CTTTTGAGAGCAAGGAATGCCACTCAAATCCTGTGTGAGAGGGAGTACAAGAAGTCGCTG 476
************************************************************
consensus_2595#0 GAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATG 435
consensus_2595#1 GAGCAGGAGATCAAGGGTAAGGGAATGTTGGCTTTGGCCACAGACACGCCAGACTTCATG 536
************************************************************
consensus_2595#0 AGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATG 495
consensus_2595#1 AGGGCCAGAAACGCCACTGACATCCTCAGCCAGACCAAGTACAAGCATAATGCAGAGATG 596
************************************************************
consensus_2595#0 GACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATG 555
consensus_2595#1 GACAGAGCCACCTACACCACTGTGATCGACACCCCCGACATCCTCCACGCTCAGCAGATG 656
************************************************************
consensus_2595#0 AAGAACATCGTCAGCCAGAAAAGGTACAAAGAAGACGCCGAGAAGACCATGTCTCACTAC 615
consensus_2595#1 AAGAACATCGTCAGCCAGAAA--------------------------------------- 677
*********************
consensus_2595#0 GTACCAGTGCTGGACACTCCAGAGATGCAGCGGGTCCGCGAGAACCAGAAGAACTTCAGC 675
consensus_2595#1 ------------------------------------------------------------
consensus_2595#0 ACTGTGCTGTACTCGGATAGTTTCCGTAAGCAGGTCCAGGGCAAGGCCGCCTTCGTGCTG 735
consensus_2595#1 ------------------------------------------------------------
consensus_2595#0 GACACGCCCGAGATGAGGCGTGTCAGGGAGACCCAGCGCATCATTTCTGGAGTGAGATAT 795
consensus_2595#1 ------------------------------------------------------------
consensus_2595#0 CACGAGGACTTTGAGAAGAACAAGGGCAGCTTCACTCCCACCACCTCTGACCTGGTGACA 855
consensus_2595#1 ------------------------------------------------------------
consensus_2595#0 GAGCGTGTGAAGAGGAACACGCAGGACATCAGCGACATCAGCTACCGCGGCATCCAGAGG 915
consensus_2595#1 ------------------------------------------------------------
consensus_2595#0 CGCGT 920
consensus_2595#1 -----
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |