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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 628 fasta sequence
[CCCGGTACTCTCCAGCACGCACATTCACATCGGCGGGACGTACAATTTCACAGCAAACAAGATGGCAGAAACCGACGTCGACAATGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCA-GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAGTGGGTGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGATTAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTTTGGTGGCCTGACCATCAAGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTATTGCCGGAACTCCCGGGCGTATTCGTGCTCTTATCCTCCAGAAGAGCCTCAGCTTGAAGAACATC]
[+] EMBL BU806435 [CCCGGTACTCTCCAGCACGCACATTCACATCGGCGGGATTTACAATTTCACAGCAAACAAGATGGCAGAAACCGACGTCGACAATGAGCTTCTGGATTATGAAGAAGATGAGGAGTCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAGTGGATGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGATTAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTTTGGTGGCCTGACCATCAAGAACGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACCTTATTGCCGGAACTCCCGGGCGTATTCGTGCTCTTATCCTCCAGAAGAGCCTCAGCTTGAAa ]
[+] EMBL FR0058907 [ TCTCCAGCACGCACATTCACATCGGCGGGACGNACAATTTTACAGCAAACAAGATGGCAGAAACCGACGTCGACAATGAGCTTCTGGATTATCAAGAAGATGAGGAGCCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGCTTTGAGCACCCTTCAGAAGGGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGGCCAGCC ]
[+] EMBL FR0061539 [ ACGCACATTCACATCGGCGGGACGTACAATTTCTCAGCAAACAAGATGGCAGAAACCGACGGGGACAATGAGCTTCTGGATTATGAAGAACATGAGGAGCCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGGGTTTGTGCTGGC ]
[+] EMBL BU806223 [ CAGCAAACAAGATGGCAGAAACCGACGTCGACAATGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAGTGGGTGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGATTAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTTTGGTGGCCTGACCATCAAGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTATTGTCGGAACTCCCGGGCGTATTCGTGCTCTTATCCTCCAGAAGAGCCTCAGCTTGAAGAACATC]
[+] EMBL FR0061283 [ GGCAGAAACCGGGGTCGACAATGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCTGTTGTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTAT ]
[+] EMBL FR0062758 [ GCAGAAACCGACGTCGACAATGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCACGAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAAAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAG ]
[+] EMBL FR0060185 [ TGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACA ]
consensusID : consensus_2606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[CTTTATATTCCTTTGGAGCCTAAGATATTGGGAAGAGCCACTTCAGCAATTTTCAGAGGATATTTCAGGCTATCAGTAGTCAGACCAAGAGTAAAATGGATGACAGAGACATCGACAACGAGCTTCTGGATTATGAAGAAGATGAGGAGACCCAGGAAGCTCCAGAGAGTTGGACCCCAGCGAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTCGAATGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAGTGGATGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGATTAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTTTGGTGGCCTGGCCATCAGGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTATTGTCGGA]
[+] EMBL CA590672 [CTTTATATTCCTTTGGAGCCTAAGATATTGGGAAGAGCCACTTCAGCAATTTTCAGAGGATATTTCAGGCTATCAGTAGTCAGACCAAGAGTAAAATGGATGACAGAGACATCGACAACGAGCTTCTGGATTATGAAGAAGATGAGGAGACCCAGGAAGCTCCAGAGAGTTGGACCCCAGCGAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTCGAATGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAGTGGATGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGATTAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTTTGGTGGCCTGGCCATCAGGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTATTGTCGGA]
consensusID : consensus_2606#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence
[CAAGATGNCATTATATCCGACGTCGACAATGAGCTTCTGGATGGTGAACATATATCACAGCCCCAAGCAGCACCACACACTGTGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGGTGACTGCGGTTTTGAGCACCCTT]
[+] EMBL FR0062564 [CAAGATGNCATTATATCCGACGTCGACAATGAGCTTCTGGATGGTGAACATATATCACAGCCCCAAGCAGCACCACACACTGTGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGGTGACTGCGGTTTTGAGCACCCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2606#0 ----------------------------------CCCGGTACTCTCCAGCACGCACATTC 26
consensus_2606#2 ------------------------------------------------------------
consensus_2606#1 CTTTATATTCCTTTGGAGCCTAAGATATTGGGAAGAGCCACTTCAGCAATTTTCAGAGGA 60
consensus_2606#0 ACATCGGCGGGACGTACAATTTCACAGCAAACAAGATGGCA--GAAACCGACGTCGACAA 84
consensus_2606#2 -------------------------------CAAGATGNCATTATATCCGACGTCGACAA 29
consensus_2606#1 TATTTCAGGCTATCAGTAGTCAGACCAAGAGTAAAATGGAT--GACAGAGACATCGACAA 118
** *** *** *******
consensus_2606#0 TGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCAGAGAGTGGGACCCC 144
consensus_2606#2 TGAGCTTCTGGATGGTGAACATATATCACAGCCCCAAGCAGCACCACACACTGTGACCCC 89
consensus_2606#1 CGAGCTTCTGGATTATGAAGAAGATGAGGAGACCCAGGAAGCTCCAGAGAGTTGGACCCC 178
************ **** * ** **** * *** *** * * * ******
consensus_2606#0 AGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGA 204
consensus_2606#2 AGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGA 149
consensus_2606#1 AGCGAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGA 238
*** ***************************** **************************
consensus_2606#0 CTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTC 264
consensus_2606#2 CTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGGTGACTGCGGTTTTGAGCACCCTT- 208
consensus_2606#1 CTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTCGAATGCGGTTTTGAGCACCCTTC 298
*********************************** ** *******************
consensus_2606#0 AGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGC 324
consensus_2606#2 ------------------------------------------------------------
consensus_2606#1 AGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGC 358
consensus_2606#0 CAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACC 384
consensus_2606#2 ------------------------------------------------------------
consensus_2606#1 CAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACC 418
consensus_2606#0 AGTGGGTGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGAT 444
consensus_2606#2 ------------------------------------------------------------
consensus_2606#1 AGTGGATGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGAT 478
consensus_2606#0 TAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTT 504
consensus_2606#2 ------------------------------------------------------------
consensus_2606#1 TAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTT 538
consensus_2606#0 TGGTGGCCTGACCATCAAGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTAT 564
consensus_2606#2 ------------------------------------------------------------
consensus_2606#1 TGGTGGCCTGGCCATCAGGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTAT 598
consensus_2606#0 TGCCGGAACTCCCGGGCGTATTCGTGCTCTTATCCTCCAGAAGAGCCTCAGCTTGAAGAA 624
consensus_2606#2 ------------------------------------------------------------
consensus_2606#1 TGTCGGA----------------------------------------------------- 605
consensus_2606#0 CATC 628
consensus_2606#2 ----
consensus_2606#1 ----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |