These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 697 fasta sequence [ACTGCCTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGGCGAAACTCTTCCAAGCGCAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCACTCGGAGAACATCGTTTACGGTGAGCTGAGCACTTTGAGGGATAGAAGAAGAGAGAGAGGGAGAACAA-ATGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACCTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGGTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAAC-AGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACAACAGCACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTGGACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAACAACTGGGGCATC] [+] EMBL CA590744 [ACTGCCTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGGCGAAACTCTTCCAAGCGCAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCACTCGGAGAACATCGTTTACGGTGAGCTGAGCACTTTGAGGGATAGAAGAAGAGAGAGAGGGAGAACAA ATGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACCTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGGTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAAC AGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACAACAGCACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCC ] [+] EMBL CA590619 [ CGGTAAACTGAGCACTTTGAGGGATAGAAGAAGAGAGA GATAACAA ATGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACTTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAAC AGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTGGACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAACAACTGGGGCATC] [+] EMBL FR0061074 [ tAAGAAGATAGAGATGGAGAACAA ATGTATCTTTCAGGCTAGGAGAATCTGCACAGGAATTTAGGATAAGACAGAGCGTAAACCTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGGGGGCACACTGGAGGTGCGCAGTGGACAGACCTGCTGGACCGCCTCAGGTCCAGAGCGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGGTCGATGTGGTGCCTATCAAGCGAAC AGGAGCATTTGTGATTAACGTCAAGGGGTATATGAGCGACAACAGCACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGGTTTt ] [+] EMBL FR0060602 [ AAGAGAGAGAGGGAGAACAAGAGGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACCTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACGCAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGGTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGGA ] [+] EMBL FR0060610 [ GGAGAACAA ATGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACCTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGCAGGTCCGCAGTGGACAGACCTGCTGGACCGGCTCAGGTCCAGAGAGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATCCTGCGAACAAGGAGCATTTTGGgat ] consensusID : consensus_2607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 650 fasta sequence [CGGAGCAGTAGTAGCAGCACTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGGCGAAACTCTTCCAAGCACAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCGCTCGGAGAACATCGTTTACGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACTTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTGGACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAAACACTGGGGCATC] [+] EMBL BU807606 [CGGAGCAGTAGTAGCAGCACTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGGCGAAACTCTTCCAAGCACAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCGCTCGGAGAACATCGTTTACGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACTTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTG ] [+] EMBL BU807459 [ GGCGCTGCCTGCCAAGAAGGCGAAACTCTTCCAAGCACAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCGCTCGGAGAACATCGTTTACGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAACTTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTCGACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTGGACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAAACACTGGGGCATC] [+] EMBL FR0060290 [ CACAGGAATTTAGGAAAAGACAGAGCGGAAACTTCGTGCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGAAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCT ] [+] EMBL FR0060130 [ GGAATTTAGGAAAAGACAGAGCGGAAACTTCGTCCAAAGTCCATGGACGGAACAAAAGGAAGACAAGAAGCGCTAAAATAATAAGGTAACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGCTCTGGCTCTAGTGGTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAGAAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATGCAGCGAACAGGGGCATTTGTGATCAACGTCAAGGGGGACATGAGCGACACCAACACCTGCACGCTGTGTTCCAACCGCTTCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2607#0 -------------ACTGC-CTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGG 46 consensus_2607#1 CGGAGCAGTAGTAGCAGCACTAGTTACCCAGCAGGATTTTGGCGCTGCCTGCCAAGAAGG 60 * ** ***************************************** consensus_2607#0 CGAAACTCTTCCAAGCGCAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCACTCGGAG 106 consensus_2607#1 CGAAACTCTTCCAAGCACAATCTCCTTCCCATCCAGATCAGGAGAGGAGCTCGCTCGGAG 120 **************** *********************************** ******* consensus_2607#0 AACATCGTTTACGGTGAGCTGAGCACTTTGAGGGATAGAAGAAGAGAGAGAGGGAGAACA 166 consensus_2607#1 AACATCGTTTACGG---------------------------------------------- 134 ************** consensus_2607#0 AATGTATCTTTCAGGCTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAAC 226 consensus_2607#1 ---------------CTACTAGAATCTGCACAGGAATTTAGGAAAAGACAGAGCGGAAAC 179 ********************************************* consensus_2607#0 CTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGTGTTAAAATAATAAGGTA 286 consensus_2607#1 TTCGTCCAAAGTCCATAAACGGAACAAAAGGAAGACAAGAAGCGTTAAAATAATAAGGTA 239 ***************************************** ***************** consensus_2607#0 ACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTG 346 consensus_2607#1 ACCATGCGAGCAGCAGGACACAAAGGGAACAGCTATGTTCTTTTTGTTCTGGCTCTAGTG 299 ************************************************************ consensus_2607#0 GTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGGTCCAGAGTGCGAG 406 consensus_2607#1 GTCACACTGGAGGTCCGCAGTGGACAGACCTGCTGGACCGCCTCAGTTCCAGAGTGCGAG 359 ********************************************** ************* consensus_2607#0 AAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATG 466 consensus_2607#1 AAAGCCCCTTTTGTGCCGGGCCACAACCTGGCAGGGGAGGGGTTCGATGTGGTGCGTATG 419 ************************************************************ consensus_2607#0 CAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACAACAGCACCTGC 526 consensus_2607#1 CAGCGAACAGGAGCATTTGTGATCAACGTCAAGGGGTACATGAGCGACACCAACACCTGC 479 ************************************************* ** ******* consensus_2607#0 ACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTC 586 consensus_2607#1 ACGCTGTGTTCCAACCGCTTCCAACAAGGACAGACTCAGAAACTCCCAGCAGCTGTTCTC 539 ************************************************************ consensus_2607#0 GACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTG 646 consensus_2607#1 GACTGGCGCCCCTTCAGCCGCTGCAGCAAGCAGCTCTCCAGCGCCCTCCACCACTCCGTG 599 ************************************************************ consensus_2607#0 GACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAACAACTGGGGCATC 697 consensus_2607#1 GACTCCCTGTTACGCAGTTCCTCCTCCCTGGTCCGGAAACACTGGGGCATC 650 ************************************** *********** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |