These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 783 fasta sequence [CAAGCCATCTCTGCAGCGCACCTCAGGGCAGCAACACGTGTTTCAACCACCCGAAACGTTTAACCCAACATTTAGTTTAAAAACGTTCACCAATCACGCTCACAAACATTCCAGCGACTCGGAGGGAGGTTGGTATTAAAAGCTGCTCCGTATCCGCAGTACTCCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAAATCCCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCCAGGCCACCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCTGGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGCCGTGATTGACGGAGTCGAGTATAAGACCGGAATAGGAAAATCCAAGAAGGAGGCTCGGCTCCAGGCTGCCCAGTACGCTCTGGAGGACCTTCTGCCGGCTATAGAACATCTGAAGTCCGCCCTGCCTGAAACACCAGATTTCCCTCCACCTCTGCTGGTGAAAGATCCGTCCGACTTCATCAGAAGAACCAGTCATGGCGGCAGCTCAGTCAACCTCCAGATTCCTCAGGCTGTCAGATTCCAGTTAAATAAAGTATTCAGCCCCCACCCAGACATCTCTGTCTGCACAAGCACCACGGCGGCGTTCGTCATCCAGACTTCTGCTGGGTTTCAGGTGGTGGCT] [+] EMBL CA333070 [CAAGCCATCTCTGCAGCGCACCTCAGGGCAGCAACACGTGTTTCAACCACCCGAAACGTTTAACCCAACATTTAGTTTAAAAACGTTCACCAATCACGCTCACAAACATTCCAGCGACTCGGAGGGAGGTTGGTATTAAAAGCTGCTCCGTATCCGCAGTACTTCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAAATCCCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCCAGGCCACCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCTGGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGCCGTGATTGACGGAGTCGAGTATAAAACCGGAATAGGAAAATCCAAGAAGGAGGCTCGGCTCCAGGCTGCCCAGTACGCTCTGGAGGACCTTCTGCCGGCTATAGAACATCTGAAGTCCGCCCTGCCTGAAACACCAGAT ] [+] EMBL CA590583 [ CTCAGGGCAGCAACACGTGTTTCAACCACCCGAAACGTTTAACCCAACATTTAGTTTAAAAACGTTCACCAATCACGCTCACAAACATTCCAGCGACTCGGAGGGAGGTTGGTATTAAAAGCTGCTCCGTATCCGCAGTACTCCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAAATCCCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCCAGGCCCCCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCTGGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGCCGTGATTGACGGAGTCGAGTATAAGACCGGAATAGGAAAATCCAAGAAGGAGGCTCGGCTCCAGGCTGCCCAGTACGCTCTGGAGGACCTTCTGCCGGCTATAGAACATCTGAAGTCCGCCCTGCCTGAAACACCAGATTTCCCTCCACCTCTGCTGGTGAAAGATCC ] [+] EMBL FR0060593 [ TAAAAACGTTCACCAATCACGCTCACAAACATTCCAGCGACTCGGAGGGAGGTTGGTATTAAAAGCTGCTCCGTATCCGCAGTACTTCGGAGCTTCCACGATGTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAAATCCCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCTAGGCCACCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGGCCAATTCCAGCTGGAACTGAAGGAAACAGGAACTCCAGCACACGGGCA ] [+] EMBL FR0061027 [ CACCAATCACGCTCACAAACATTCCAGCGACTCGTAGGGAGGTTGGTATTAAAAGCTGCTCCGTATCCGCAGTACTCCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAAATCCCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCCAGGCCCCCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCTGGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGCCGTGA ] [+] EMBL FR0060218 [ CAAACATTCCAGCGACTCGGAGGGAGGTTGGTATTAAAAGCTGCTCCGTATCCGCAGTACTCCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAAATCCCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCCAGGCCCCCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCTGGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGCCGTGATTGACGGAGTCGAGTATAAGACCGGAATAGGATAA ] [+] EMBL CA590445 [ GTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAACTCCCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCCAGGCCACCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCTGGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGCCGTGATTGACGGAGTCGAGTATAAAACCGGAATAGGAAAATCCAAGAAGGAGGCTCGGCTCCAGGCTGCCCAGTACGCTCTGGAGGACCTTCTGCCGGCTATAGAACATCTGAAGTCCGCCCTGCCTGAAACACCAGATTTCCCTCCACCTCTGCTGGTGAAAGATCCGTCCGACTTCATCAGAAGAACCAGTCATGGCGGCAGCTCAGTCAACCTCCAGATTCCTCAGGCTGTCAGATTCCAGTTAAATAAAGTATTCAGCCCCCACCCAGACATCTCTGTCTGCACAAGCACCACGGCGGCGTTCGTCATCCAGACTTCTGCTGGGTTTCAGGTGGTGGCT] consensusID : consensus_2616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 602 fasta sequence [CTCAGGGCAGCAACACGTGTTTCAACCACCCGAAACGTTTAACCCAACATTTAGTTTAAAAACGTTCACCAATCACGCTCACAAACATTCCAGCGACTCGGAGGGAGCGACCTTAGAGACAAGACTTCCATTTCTGTGCGTGTCTAGGTTGGTATTAAAAGCTGCTCCGTATCCGCAGTACTTCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAAATC-CCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCCAGGCCACCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCTGGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGCCGTGATTGACGGAGTCGAGTATAAAACCGGAATAGGAAAATCCAAGAAGGAGGCTCGGCTCCAGGCTGCCCAGTACGCTCTGGAGGACCTTCTGCCGGCTATAGAACATCTGAAGTCCGCCCTGCCTGAAACACCAGATTTCC] [+] EMBL CA590332 [CTCAGGGCAGCAACACGTGTTTCAACCACCCGAAACGTTTAACCCAACATTTAGTTTAAAAACGTTCACCAATCACGCTCACAAACATTCCAGCGACTCGGAGGGAGCGACCTTAGAGACAAGACTTCCATTTCTGTGCGTGTCTAGGTTGGTATTAAAAGCTGCTCCGTATCCGCAGTACTTCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAAATC CCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCCAGGCCACCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCTGGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGCCGTGATTGACGGAGTCGAGTATAAAACCGGAATAGGAAAATCCAAGAAGGAGGCTCGGCTCCAGGCTGCCCAGTACGCTCTGGAGGACCTTCTGCCGGCTATAGAACATCTGAAGTCCGCCCTGCCTGAAACACCAGAT ] [+] EMBL CA333297 [CTCAGGGCAGCAACACGTGTTTCAACCACCCGAAACGTTTAACCCAACATTTAGTTTAAAAACGTTCACCAATCACGCTCACAAACATTCCAGCGACTCGGAGGGAGCGACCTTAGAGACAAGACTTCCATTTCTGTGCGTGTCTAGGTTGGTATTAAAAGCTGCTCCGTATCCGCAGTACTTCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAAATC CCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCCAGGCCACCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCTGGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGCCGTGATTGACGGAGTCGAGTATAAAACCGGAATAGGAAAATCCAAGAAGGAGGCTCGGCTCCAGGCTGCCCAGTACGCTCTGGAGGACCTTCTGCCGGCTATAGAACATCTGAAGTCCGCCCTGCCTGAAACACCAGAT ] [+] EMBL BU807578 [ TCAGGGCAGCAACACGTGTTTCAACCACCCGAAACGTTTAACCCAACATTTAGTTTAAAAACGTTCACCAATCACGCTCACAAACATTCCAGCGACTCGGAGGGAGCGACCTTAGAGACAAGACTTCCATTTCTGTGCGTGTCTAGGTTGGTATTAAAAGCTGCTCCGTATCCGCAGTACTTCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATTAAGAGGAAACCCCCGTCAGAGAAATCTTCAACAACCCTCGGAAAAAAGATGGCGCCGCCCGGAGAGGTTGGAACGCCAGGCCACCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCAGGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCTGGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGCCGTGATTGACGGAGTCGAGTATAAAACCGGAATAGGAAAATCCAAGAAGGAGGCTCGGCTCCAGGCTGCCCAGTACGCTCTGGAGGACCTTCTGCCGGCTATAGAACATCTGAAGTCCGCCCTGCCTGAAACACCAGATTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2616#0 CAAGCCATCTCTGCAGCGCACCTCAGGGCAGCAACACGTGTTTCAACCACCCGAAACGTT 60 consensus_2616#1 ---------------------CTCAGGGCAGCAACACGTGTTTCAACCACCCGAAACGTT 39 *************************************** consensus_2616#0 TAACCCAACATTTAGTTTAAAAACGTTCACCAATCACGCTCACAAACATTCCAGCGACTC 120 consensus_2616#1 TAACCCAACATTTAGTTTAAAAACGTTCACCAATCACGCTCACAAACATTCCAGCGACTC 99 ************************************************************ consensus_2616#0 GGAGGGAG----------------------------------------GTTGGTATTAAA 140 consensus_2616#1 GGAGGGAGCGACCTTAGAGACAAGACTTCCATTTCTGTGCGTGTCTAGGTTGGTATTAAA 159 ******** ************ consensus_2616#0 AGCTGCTCCGTATCCGCAGTACTCCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATT 200 consensus_2616#1 AGCTGCTCCGTATCCGCAGTACTTCGTAGCTTCCACGATGTTCCCACCCAGTAGAATATT 219 *********************** ************************************ consensus_2616#0 AAGAGGAAACCCCCGTCAGAGAAATCCCAACAACCCTCGGAAAAAAGATGGCGCCGCCCG 260 consensus_2616#1 AAGAGGAAACCCCCGTCAGAGAAATCCCAACAACCCTCGGAAAAAAGATGGCGCCGCCCG 279 ************************************************************ consensus_2616#0 GAGAGGTTGGAACGCCAGGCCACCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCA 320 consensus_2616#1 GAGAGGTTGGAACGCCAGGCCACCCTTGGACCCCAACGTTCTGATTGAGAGATACAGGCA 339 ************************************************************ consensus_2616#0 GGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCT 380 consensus_2616#1 GGACGAGATGAATGCTCTGGCTTTAATCCACAACCTCGCTCAGGTTGTCCAATTCCAGCT 399 ************************************************************ consensus_2616#0 GGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGC 440 consensus_2616#1 GGAACTGAAGGAAACAGTAACTCCAGCACACGTGCACGGGCTTCACTTTGCTTTCTGTGC 459 ************************************************************ consensus_2616#0 CGTGATTGACGGAGTCGAGTATAAGACCGGAATAGGAAAATCCAAGAAGGAGGCTCGGCT 500 consensus_2616#1 CGTGATTGACGGAGTCGAGTATAAAACCGGAATAGGAAAATCCAAGAAGGAGGCTCGGCT 519 ************************ *********************************** consensus_2616#0 CCAGGCTGCCCAGTACGCTCTGGAGGACCTTCTGCCGGCTATAGAACATCTGAAGTCCGC 560 consensus_2616#1 CCAGGCTGCCCAGTACGCTCTGGAGGACCTTCTGCCGGCTATAGAACATCTGAAGTCCGC 579 ************************************************************ consensus_2616#0 CCTGCCTGAAACACCAGATTTCCCTCCACCTCTGCTGGTGAAAGATCCGTCCGACTTCAT 620 consensus_2616#1 CCTGCCTGAAACACCAGATTTCC------------------------------------- 602 *********************** consensus_2616#0 CAGAAGAACCAGTCATGGCGGCAGCTCAGTCAACCTCCAGATTCCTCAGGCTGTCAGATT 680 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 CCAGTTAAATAAAGTATTCAGCCCCCACCCAGACATCTCTGTCTGCACAAGCACCACGGC 740 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 GGCGTTCGTCATCCAGACTTCTGCTGGGTTTCAGGTGGTGGCT 783 consensus_2616#1 ------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |