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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2620#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 758 fasta sequence
[ATAAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG-GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAATAACTGGGCAAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGGAGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAGAGGAGTACCCAGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGTGTCAGATACAGTGGTGGAGCCATACAATGCCACCCTCTCTGTGCATCAGCTGGTTGAGAACACCGATGAGACATACTGCATTGACAATGAGGCCCTCTATGACATCTGCTTTCGCACATTGAAACTGACCACACCCACCTATTCTGACCTCAACCATCTTGTCTCATGCACCATGAGC]
[+] EMBL CA332974 [ATAAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCCCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAACAACTGGGCCAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCC ]
[+] EMBL BU807719 [ATAAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCAGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAATAACTGGGCAAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGGAGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAGAGGAGTACCCAGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGTGTCAGATACAGTGGTGGAGCCATACAATGCCACCCTCTCTGTG ]
[+] EMBL CA332901 [ATAAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGGGCAGGTAATAACTGGGCAAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGGAGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAGAGGAGTACCCAGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGTGTCAGATACAGTGGTGGAGCCATACAATGCC ]
[+] EMBL CA590273 [ AAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAATAACTGGGCAAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGGAGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAGAGGAGTACCCAGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGT TCATAAAatttct ]
[+] EMBL FR0060308 [ TTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAATAACTGGTCAAAAGGCCACTA ]
[+] EMBL FR0060454 [ gTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGTCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGTAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCCCGTGCAGTCCTGGTGTGATCTGGAGCCA GCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAG ]
[+] EMBL FR0060970 [ ATCAGAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGGTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGGGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATC ]
[+] EMBL CA590431 [ ACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAACAACTGGGCCAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGGAGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAAAGGAGTACCCAGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGTGTCAGATACAGTGGTGGAGCCATACAATGCCACCCTCTCTGTGCATCAGCTGGTTGAGAACACCGATGAGACATACTGCATTGACAATGAGGCCCTCTATGACATCTGCTTTCGCACATTGAAACTGACCACACCCACCTATTCTGACCTCAACCATCTTGTCTCATGCACCATGAGC]
consensusID : consensus_2620#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence
[GTGGATTTATGTCAAGCATTTAAGTCAGTATCTTTTCCTATTTCCATGGAAAAATCAACAGAATCAACAAATAGCTTTTTTGTAGGTCAAAATGTATTTAATTTTGTTTTGCTGTTTCGATGATAATCCCCTTTGTGGCATCTAGCTGCTCCAGGAATTGCGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTAACCACTACAAAAATCCTCTGCCACATCAGAACTTGACTGTATAGTTTAACATTTATTGTACCTCAGCCACAGGCTCCAGTCATGCAGGATCCTGGGAATCATTAGTTGTTGATACATAAAGGATTCATTCATTTTCACTGCCTTGTTTTTACCATTAGAAGAAACAACTAAAATCATTGTTACAAAGGACCATATGATAGCTAAAT]
[+] EMBL CA590638 [GTGGATTTATGTCAAGCATTTAAGTCAGTATCTTTTCCTATTTCCATGGAAAAATCAACAGAATCAACAAATAGCTTTTTTGTAGGTCAAAATGTATTTAATTTTGTTTTGCTGTTTCGATGATAATCCCCTTTGTGGCATCTAGCTGCTCCAGGAATTGCGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTAACCACTACAAAAATCCTCTGCCACATCAGAACTTGACTGTATAGTTTAACATTTATTGTACCTCAGCCACAGGCTCCAGTCATGCAGGATCCTGGGAATCATTAGTTGTTGATACATAAAGGATTCATTCATTTTCACTGCCTTGTTTTTACCATTAGAAGAAACAACTAAAATCATTGTTACAAAGGACCATATGATAGCTAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2620#0 ------------------------------------------------------------
consensus_2620#1 GTGGATTTATGTCAAGCATTTAAGTCAGTATCTTTTCCTATTTCCATGGAAAAATCAACA 60
consensus_2620#0 ------------------------------------------------------------
consensus_2620#1 GAATCAACAAATAGCTTTTTTGTAGGTCAAAATGTATTTAATTTTGTTTTGCTGTTTCGA 120
consensus_2620#0 -----ATAAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCAC 55
consensus_2620#1 TGATAATCCCCTTTGTGGCATCTAGCTGCTCCAGGAATTGCGAACACTGATTTAAATCAC 180
** * * * **** ************ *******************
consensus_2620#0 AATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTT 115
consensus_2620#1 AATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTT 240
************************************************************
consensus_2620#0 TTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAG 175
consensus_2620#1 TTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAG 300
************************************************************
consensus_2620#0 CAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGT 235
consensus_2620#1 CAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTAACCACTACAA 360
************************************************* * **
consensus_2620#0 TCCTCGTGCAGTCCTGGTGGATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACC 295
consensus_2620#1 AAATCCT-CTGCCACATCAGAACTTGACT---GTATAGTTTAACATTTA----TTGTACC 412
** * * * * ** ** ** * * * * * * * ** ***
consensus_2620#0 TTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAATAA 355
consensus_2620#1 TCAGCCACAGGCTCCAGTCATGCAGGATCCTGGGAATCATTAGTTGTTGATACATAAAGG 472
* * *** * * * ** ** * ***
consensus_2620#0 CTGGGCAAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGT 415
consensus_2620#1 ATTCATTCATTTTCACTGCCTTGTTTTTACCA--TTAGAAGAAACAACTAAAATCATTGT 530
* * **** * ** ** * * *** * * **
consensus_2620#0 GAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGG 475
consensus_2620#1 TACAAAGGAC-CATATGATAGCTAAAT--------------------------------- 556
* ****** ** * * ** *
consensus_2620#0 AGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAGAGGAGTACCC 535
consensus_2620#1 ------------------------------------------------------------
consensus_2620#0 AGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGTGTCAGATACAGTGGT 595
consensus_2620#1 ------------------------------------------------------------
consensus_2620#0 GGAGCCATACAATGCCACCCTCTCTGTGCATCAGCTGGTTGAGAACACCGATGAGACATA 655
consensus_2620#1 ------------------------------------------------------------
consensus_2620#0 CTGCATTGACAATGAGGCCCTCTATGACATCTGCTTTCGCACATTGAAACTGACCACACC 715
consensus_2620#1 ------------------------------------------------------------
consensus_2620#0 CACCTATTCTGACCTCAACCATCTTGTCTCATGCACCATGAGC 758
consensus_2620#1 -------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |