These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence [CCGCACGTTAGCACACTTCTCTCGTCCCTCAGACGCGTACGAGGAGTCATGGAGGCTGCGCATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGNTTCACTCAGCGAACAGCGCACTCCCGCTAATCAAGAGCCGGCCACGAATGCTGCATCCGAGCCAGTGGCTCAGAGTGCCCCAGCCAGGGAGGAGGACAAATCAGAGGCTAAGGCGGAGGTGACCGAGGAGGCAGAAGCAGCCGCCGAACCGAAGGTAGAAGTCGATGCTGAAGGTGCCGCCAAGTTCGTGGCAGCGGTCGCAGAGGAGGAAGCGGCCGCGGCTGTAGAGGAAGCGGAGAAGAAGACGGAAGAGGCGACCTCGTAGGGGACAATCCATTCATTCCCAACCAAATCCGACGCGTACATCCCACACTACGGATCACATTACTCTCAAAGTTTCATGCCACTAAACCTTTTTTTTTTAAATGCAAACAACATTGACAACACTTT] [+] EMBL FR0061192 [CCGCACGTTACCACACTTCTCTCGTCCCTCAGACGCGTACGAGGAGTCATGGAGGCTGCGCATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGNTTCACTCAGCGAACAGCGCACTCCCGCTAATCAAGAGCCGGCCACGAATGCTGCATCCGAGCCAGTG ] [+] EMBL CA846153 [ GTTAGCACACTTCTCTCGTCCCTCAGACGCGTACGACGATTCATGGAGGCTGC CATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGTTTCACTCAGCGAACAGCGCACTCCCGCTAATCAAGAGCCGGCCACAAATGCTGCATCCGAGCCAGTGGCTCAGAGTGCCCCAGCCAGGGAGGAGGACAAATCAGAGGCTAAGGCGGAGGTGACCGAGGAGGCAGAAGCAGCCGCCGAACCGAAGGTAGAAGTCGATGCTGAAGGTGCCGCCAAGTTCGTGGCAGCGGTCGCAGAGGAGGAAGCGGCCGCGGCTGTAGAGGAAGCGGAGAAGAAGACGGAAGAGGCGACCTCGTAGGGGACAATCCATTCATTCCCAACCAAATCCGACGCGTACATCCCACACTACGGATCACATTACTCTCAAAGTTTCATGCCACTAAACCTTTTTTTTTTAAATGCAAACAACATTGACAACACTTT] consensusID : consensus_2621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 622 fasta sequence [AGCGCACGTTAGCACACTTCTCTCGTCCCTCAGACGCGTACGAGGAGTCATGGAGGCTGCCATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGTTTCACTCAGCGAACAGCGCACTCCCGCTAATCAAGAGCCGGCCACAAATGCTGCATCCGAGCCAGTGGCTCAGAGTGCCCCAGCCAGGGAGGAGGACAAATCAGAGGCTAAGGCGGAGGTGACCGAGGAGGCAGAAGCAGCCGCCGAACCGAAGGTAGACGCCAACGCAGAGCCAACGGTACAATTAAAGGTAGACGCCAAGGCCGAGCCAATGGTAGATTTGAAGGTGGAAGCTAACGCCAGCCCAAAGGTAGAAGTCGATGCTGAAGGTGCCGCCAAGATCGTGGCAGCGGTCGCAGAGGAGGAGCCGGCGGCGGCATCGGGAGGAGAGGTGACGGCAGCG] [+] EMBL BU806188 [AGCGCACGTTAGCACACTTCTCTCGTCCCTCAGACGCGTACGAGGAGTCATGGAGGCTGCCATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGTTTCACTCAGCGAACAGCGCACTCCCGCTAATCAAGAGCCGGCCACAAATGCTGCATCCGAGCCAGTGGCTCAGAGTGCCCCAGCCAGGGAGGAGGACAAATCAGAGGCTAAGGCGGAGGTGACCGAGGAGGCAGAAGCAGCCGCCGAACCGAAGGTAGACGCCAACGCAGAGCCAACGGTACAATTAAAGGTAGACGCCAAGGCCGAGCCAATGGTAGATTTGAAGGTGG ] [+] EMBL BU807239 [AGCGCACGTTAGCACACTTCTCTCGTCCCTCAGACGCGTACGAGGAGTCATGGAGGCTGCCATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTG ] [+] EMBL BU808413 [ CGCACGTTAGCACACTTCTCTCGTCCCTCAGACGCGTACGAGGAGTCATGGAGGCTGCCATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGTTTCACTCAGCGAACAGCGCACTCCCGCTAATCAAGAGCCGGCCACAAATGCTGCATCCGAGCCAGTGGCTCAGAGTGCCCCAGCCAGGGAGGAGGACAAATCAGAGGCTAAGGCGGAGGTGACCGAGGAGGCAGAAGCAGCCGCCGAACCGAAGGTAGACGCCAACGNAGAGNCAACGGTACAATT ] [+] EMBL CA846183 [ gcCTTTAGCACACTTCTCTCGTCCCTCAGACGCGTACGAGGAGTCATGGAGGCTGCCATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGTTTCACTCAGCGAACAGCGCACTCCCGCTAATCAAGAGCCGGCCACAAATGCTGCATCCGAGCCAGTGGCTCAGAGTGCCCCAGCCAGGGAGGAGGACAAATCAGAGGCTAAGGCGGAGGTGACCGAGGAGGCAGAAGCAGCCGCCGAACCGAAGGTAGACGCCAACGCAGAGCCAACGGTACAATTAAAGGTAGACGCCAAGGCCGAGCCAATGGTAGATTTGAAGGTGGAAGCTAACGCCAGCCCAAAGGTAGAAGTCGATGCTGAAGGTGCCGCCAAGATCGTGGCAGCGGTCGCAGAGGAGGAGCCGGCGGCGGCATCGGGAGGAGAGGTGACGGCAGCG] [+] EMBL BU808084 [ AGCACACTTCTCTCGTCCCTCAGACGCGTACGAGGAGTCATGGAGGCTGCCATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGTTTCACTCAGCGAACAGCGCACTCCCGCTAATCAAGAGCCGGCCACAAATGCTGCATCCGAGCCAGTGGCTCAGAGTGCCCCAGCCAGGGAGGAGGACAAATCAGAGGCTAAGGCGGAGGTGACCGAGGAGGCAGAAGCAGCCGCCGAACCGAAGGTAGACGCCAACGCAGAGCCAACGGTACAATTAAAGGTAGACGCCAAGGCCGAGCCAATGGTAGATTTGAAGGTGGAAGCTAACGCCAGCCCAAAGGTAGAAGTCGA ] [+] EMBL FR0061184 [ CGTACGAGGAGTCATGGAGGCTGCCATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTGGTGGGCTACNNCTGCGGTTCACTCAGCGAACAGCGCACTCCCGCTAATCAAGAGCCGGCCA ] [+] EMBL FR0061651 [ CATTCAGACCCTGGTGAAGGGCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAAAGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACAGCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTGGTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGTTTCACTCAGCGAACAGCGCACTCCCGCTAATCAAGAGCCGGCCACAAATGCTGCATCCGAGCCAGTGGCTCAGAGTGCCCCAGCCAGGGAGGAGGACA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2621#0 -CCGCACGTTAGCACACTTCTCTCGTCCCTCAGACGCGTACGAGGAGTCATGGAGGCTGC 59 consensus_2621#1 AGCGCACGTTAGCACACTTCTCTCGTCCCTCAGACGCGTACGAGGAGTCATGGAGGCTGC 60 ********************************************************** consensus_2621#0 GCATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAA 119 consensus_2621#1 -CATTCAGACCCTGGTGAAGGTCTTCCTGAAATCGTCCAAAGGAAGGGAGAGCCTAGGAA 119 *********************************************************** consensus_2621#0 AGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACA 179 consensus_2621#1 AGAAAGAGTTCCACACACTTGTCAAGAGCCAACTCTCCAACATCCTTTCGGACACTGACA 179 ************************************************************ consensus_2621#0 GCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTG 239 consensus_2621#1 GCAAGAAAGCTGTCAACAATATGGGCCAGGAGCTGGATGCCAACAAGGATGGGAAGGTTG 239 ************************************************************ consensus_2621#0 GTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGNTTCACTCAGCGAACAGCGCA 299 consensus_2621#1 GTTTTGAGGAGTACATGAAGCTGGTGGGCTACCTGGCGGTTTCACTCAGCGAACAGCGCA 299 *************************************** ******************** consensus_2621#0 CTCCCGCTAATCAAGAGCCGGCCACGAATGCTGCATCCGAGCCAGTGGCTCAGAGTGCCC 359 consensus_2621#1 CTCCCGCTAATCAAGAGCCGGCCACAAATGCTGCATCCGAGCCAGTGGCTCAGAGTGCCC 359 ************************* ********************************** consensus_2621#0 CAGCCAGGGAGGAGGACAAATCAGAGGCTAAGGCGGAGGTGACCGAGGAGGCAGAAGCAG 419 consensus_2621#1 CAGCCAGGGAGGAGGACAAATCAGAGGCTAAGGCGGAGGTGACCGAGGAGGCAGAAGCAG 419 ************************************************************ consensus_2621#0 CCGCCGAACCGAAGGTAGAAGTCGATGCTGAAGGTGCCGCCAAGTTCGTGGCAGCGGTCG 479 consensus_2621#1 CCGCCGAACCGAAGGTAGACGCCAACGCAGAGCCAACGGTACAATTAAAGGTAGA---CG 476 ******************* * * * ** ** * * * ** ** ** ** consensus_2621#0 CAGAGGAGGAAGCGGCCGCGGCTGTAGAGGAAGCGGAGAAGAAGACGGAAGAGGCGACCT 539 consensus_2621#1 CCAAGGCCGAGCCAATGGTAGATTTGAAGGTGGAAGCTAACGCCAGCCCAAAGG------ 530 * *** ** * * * * * *** * * ** * * *** consensus_2621#0 CGTAGGGGACAATCCATTCATTCCCAACCAAATCCGACGCGTACATCCCACACTACGGAT 599 consensus_2621#1 --TAGAAGTCGATGCTGAAGGTGCCG-CCAAGATCGTGGCAGCGGTCGCAGAGGAGGAGC 587 *** * * ** * * ** **** ** ** ** ** * * * consensus_2621#0 CA-CATTACTCTCAAAGTTTCATGCCACTAAACCTTTTTTTTTTAAATGCAAACAACATT 658 consensus_2621#1 CGGCGGCGGCATCGGGAGGAGAGGTGACGGCAGCG------------------------- 622 * * ** * * ** * * consensus_2621#0 GACAACACTTT 669 consensus_2621#1 ----------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |