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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 644 fasta sequence
[TGCTGGCACGGAGCACAAAGCATCCGTCGGTGCCTTTAAGACTACCTCGAGGATTGCAAACTCTTTACTTTCGACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG-CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGCGCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCACGGGGGCCATGGCCGTGGCCTTTGCGCAGCCGACGGACGTGGTGAAGGTGCGATTCCAAGCCCAGGTACGA]
[+] EMBL BU806859 [TGCTGGCACGGAGCACAAAGCATCCGTCGGTGCCTTTAAGACTACCTCGAGGATTGCAAACTCTTTACTTTCGACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGCGCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCA ]
[+] EMBL BU807270 [ CATCCGTCGGTGCCTTTAAGACTACCTCGAGGATTGCAAACTCTTTACTTTCGACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGGTGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGCGCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCACGGGGGCCATGGCCGTGGCCTTTGCGCAGCCGACGGACGTGGTGAAGGTGCGATTCCAAGCCCAGGT ]
[+] EMBL BU805626 [ TGCCTTTAAGACTACCTCGAGGATTGCAAACTCTTTACTTTCGACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACAGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGCGCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCACGGGGGCCATGGCCGTGGCCTTTGCGCAGCCGACGGACGTGGTGAAGGTGCGATTCCAAGCCCAGGTACGA]
[+] EMBL BU805534 [ AGACTACCTCGAGGATTGCAAGCTCTTTACTTTCCACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGCGCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCACGGGGGCCATGGCCGTGGCCTTTGCGCAGCCGACGGACGTGGTGAAGGTG ]
[+] EMBL FR0063971 [ CAAACTCTTTACTTTCGACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTGATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGA GGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGGCTGGTGGg ]
[+] EMBL BU804571 [ TATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGGTTCTGTTTAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGCGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTAC ]
[+] EMBL BU806634 [ TATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCA TTTTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGGCACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGG ]
consensusID : consensus_2623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[TTAGACCATTGTTAGATTATCCCTTTTGTTCGGATTTGTAGTATGCTTTTACGGCTTATTACTTCCAAGAGATCTATGGAAAATCGACAAAGAGAATTTATAGATGGGACCAAGTTCAGTAAGAAGGACGCCTTTAGAGAATCCTGATCTTGGTGCTTTTTCCTCATCACGTGCCGCAGTAAAGAGTTCCGGGTTTTGTTCCCTGGACTTTACTGCTCCAGTCCTCATTCCTGATATTACTGTCGATAAGCGCGGAACATGGTGGGATTCGGACCCGCAGAAGCGCCGCCCTCGGCGGTGGTGAAGTTTGTGGGTGCGGGCACGGCGGCCTGCATCGCTGACCTGCTCACCTTCCCTCTGGACACCGCCAAAGTGCGGCTGCAGATCCAAGGAGAGGGCAAGGGTGCGGGAGCGTCTGCTGTGAAATATCGCGGAATGTTTGGCACCATCACCACCATGGTGCGCACCGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGAGGCAGATGAGCTTCGCCTCTGTCCGGATCGGCCTCTACGACTCTGTCAAGCAGTTCTACACCAGAGGCTCTGATTGTATCGGGCGCGGCACCAGGCTGCTGGGGGGCTGCACCACCGGCGCCATG]
[+] EMBL CA591208 [TTAGACCATTGTTAGATTATCCCTTTTGTTCGGATTTGTAGTATGCTTTTACGGCTTATTACTTCCAAGAGATCTATGGAAAATCGACAAAGAGAATTTATAGATGGGACCAAGTTCAGTAAGAAGGACGCCTTTAGAGAATCCTGATCTTGGTGCTTTTTCCTCATCACGTGCCGCAGTAAAGAGTTCCGGGTTTTGTTCCCTGGACTTTACTGCTCCAGTCCTCATTCCTGATATTACTGTCGATAAGCGCGGAACATGGTGGGATTCGGACCCGCAGAAGCGCCGCCCTCGGCGGTGGTGAAGTTTGTGGGTGCGGGCACGGCGGCCTGCATCGCTGACCTGCTCACCTTCCCTCTGGACACCGCCAAAGTGCGGCTGCAGATCCAAGGAGAGGGCAAGGGTGCGGGAGCGTCTGCTGTGAAATATCGCGGAATGTTTGGCACCATCACCACCATGGTGCGCACCGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGAGGCAGATGAGCTTCGCCTCTGTCCGGATCGGCCTCTACGACTCTGTCAAGCAGTTCTACACCAGAGGCTCTGATTGTATCGGGCGCGGCACCAGGCTGCTGGGGGGCTGCACCACCGGCGCCATG]
consensusID : consensus_2623#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence
[TATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGTCTTTTTTAGCAGCAAAGTTTTTTGGAGCGGGCACGGCGGCCTGCATAACTGACCTCGCCACCTTCCCACTGGACACAGGCAAAGGTAGACTACAGATTCGTGGGGAATCTCACATAGGGGAGGGCACCACAAGCCCGAAGGACCGGGGGGTGTTTGACACCATCACCACAATGGGGCACAAACAGGGTACCCCAAACTCTCGACAACCAGATGCGTGCGCCAGCGTCCGCCACCGAATTAACGTGTTCTCT]
[+] EMBL BU805144 [TATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGTCTTTTTTAGCAGCAAAGTTTTTTGGAGCGGGCACGGCGGCCTGCATAACTGACCTCGCCACCTTCCCACTGGACACAGGCAAAGGTAGACTACAGATTCGTGGGGAATCTCACATAGGGGAGGGCACCACAAGCCCGAAGGACCGGGGGGTGTTTGACACCATCACCACAATGGGGCACAAACAGGGTACCCCAAACTCTCGACAACCAGATGCGTGCGCCAGCGTCCGCCACCGAATTAACGTGTTCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2623#0 -------------------------------------------TGCTGGCACGGAGCACA 17
consensus_2623#2 ------------------------------------------------------------
consensus_2623#1 TTAGACCATTGTTAGATTATCCCTTTTGTTCGGATTTGTAGTATGCTTTTACGGCTTATT 60
consensus_2623#0 AAGCATCCGTCGGTGCCTTTAAGACTACCTCGAGGATT-GCAAACTCTTTACTTTCGACT 76
consensus_2623#2 ------------------------------------------------------------
consensus_2623#1 ACTTCCAAGAGATCTATGGAAAATCGACAAAGAGAATTTATAGATGGGACCAAGTTCAGT 120
consensus_2623#0 GGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGAC--ATCAC-TGCAAC 133
consensus_2623#2 ----TATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGAC--ATCAC-TGCAAC 53
consensus_2623#1 AAGAAGGACGCCTTTAGAGAATCCT---GATCTTGGTGCTTTTTCCTCATCACGTGCCGC 177
* * ** ** *** *** ** ** * * ***** *** *
consensus_2623#0 TTCAAAGATTC----GTTTCCTTCTCGAGAA---AACCTGAAACTCTTCCTCCCCGTTAC 186
consensus_2623#2 TTCAAAGATTC----GTTTCCTTCTCGAGAA---AACCTGAAACTCTTCCTCCCCGTTAC 106
consensus_2623#1 AGTAAAGAGTTCCGGGTTTTGTTCCCTGGACTTTACTGCTCCAGTCCTCATTCCTGATAT 237
***** * **** *** * ** * * ** ** * ** * **
consensus_2623#0 TAACAGGAATAA-------AAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCA 239
consensus_2623#2 TAACAGGAATAA-------AAATGGTTGGCATGAAAGCCCCAGATGTGGTGTCTTTTTTA 159
consensus_2623#1 TACTGTCGATAAGCGCGGAACATGGTGGGATTCGGACCCGCAGAAGCGCCGCCCTCGGCG 297
** **** * ***** ** * * ** **** * * * * *
consensus_2623#0 GCAGTAAAGTTTTTTGGAGCGGGCACGGCGGCCTGCATAGCTGACCTCGTCACCTTCCCA 299
consensus_2623#2 GCAGCAAAGTTTTTTGGAGCGGGCACGGCGGCCTGCATAACTGACCTCGCCACCTTCCCA 219
consensus_2623#1 GTGGTGAAGTTTGTGGGTGCGGGCACGGCGGCCTGCATCGCTGACCTGCTCACCTTCCCT 357
* * ****** * ** ******************** ******* *********
consensus_2623#0 CTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGC 359
consensus_2623#2 CTGGACACAGGCAAAGGTAGACTACAGATTCGTGGGGAATCTCACATAGGGGAGGGCACC 279
consensus_2623#1 CTGGACACCGCCAAAGTGCGGCTGCAGATCCAAGGAGAGG---GCAAGGGTGCGGGAGCG 414
******** * ***** * ** ***** * ** ** * * * ***
consensus_2623#0 AGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGC 419
consensus_2623#2 ACAAGCCCGAAGGACCGGGGGGTGTTTGACACCATCACCACAATGGGGCACAAACAGGGT 339
consensus_2623#1 TCTGCTGTGAAATATCGCGGAATGTTTGGCACCATCACCACCATGGTGCGCACCGAGGGC 474
*** * ** ** ****** ************ **** ** ** ****
consensus_2623#0 -CCCAGGAGTCTGTACAGCGGCCTG-GTG-GCGGGGCTCCAGCGACAGATGAGCTTCGCC 476
consensus_2623#2 ACCCCAAACTCTCGACAACCAGATGCGTGCGCCAGCGTCCGCCACCGAATTAACGTGTTC 399
consensus_2623#1 -CCCAGGAGTCTGTACAGCGGCCTG-GTG-GCGGGGCTCCAGAGGCAGATGAGCTTCGCC 531
*** * *** *** * ** *** ** * *** * ** * * * *
consensus_2623#0 TCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGC 536
consensus_2623#2 TCT--------------------------------------------------------- 402
consensus_2623#1 TCTGTCCGGATCGGCCTCTACGACTCTGTCAAGCAGTTCTACACCAGAGGCTCTGATTGT 591
**
consensus_2623#0 GCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCACGGGGGCCATGGCCGTGGCCTTT 596
consensus_2623#2 ------------------------------------------------------------
consensus_2623#1 ATCGGGCGCGGCACCAGGCTGCTGGGGGGCTGCACCACCGGCGCCATG------------ 639
consensus_2623#0 GCGCAGCCGACGGACGTGGTGAAGGTGCGATTCCAAGCCCAGGTACGA 644
consensus_2623#2 ------------------------------------------------
consensus_2623#1 ------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |