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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 987 fasta sequence
[AGTAGCGGACGGTGAAGGTTACCTGCTTCAACAGTGCTTGAACGGCAACCTTTTATCTGCCACTCTAATTCCACGCGAGTAATTTACTAGCAAATATCGCAACGTATCATCGACGCTAAGCAAAAAAAAACAACAACGCAGTAATTGGCTCGAATCTCTCACACGTTCTTAGCTAGCAAGGCAGTGTTGTTTTGCTAACGACGCAAGCGGATCCAGCAGCTCTTCTACTCCATCACCGTAAGACCCGACACTGAAATTTGGAACAATGAGTTCCCAGGTGAGACAGAACTTCCACCAGGACTGTGAGGCTGCCATCAACAGGCAGATCAATCTGGAGCTGTATGCCTCCTATGTCTACCTGTCAATGTCCTATTACTTTGACCGGGATGACCAGGCATTGCACAACTTTGCCAAGTTTTTCCGCCATCAGTCACATGA-GGAGCGTGAGCATGCCGAGAAGCTAATGAAAATGCAGAACCAGAGAGGAGGGAGGATCTTCCTGCAAGATGTCAGGAAACCAGAGCGTGATGAGTGGGGCAGTGGAATGGAAGCCCTTGAATGTGCCCTGCAGCTTGAGAAGAGTGTGAACCAGTCGCTGCTGGACTTGCACAAGATGTGCTCTGATCACAACGACCCCCATTTGTGCGATTTCATCGAGACACATTTCCTGGACGAGCAAGTGAAGTCTATCAAAGAACTGGCAGACTGGGTGACCAACCTGCGGCGCATGGGGGCTCCCCAGAACGGCATGGCCGAATACCTGTTTGACAAACACACTCTTGGCAAAGAGAGCAGCTAAATGGCAAAATGTCAATGAAGCTTTTTGTGTGTATGTTTGCATCTTGCTTTCACAGTCTAAAG-CATCAGCATGACACCGGCCATGAATATTTAGCCACTTCTATATATTCTTAATTTAAAGGCTGTTATTGTTTCTATCATCTTCTATTAGAACCCTGACACATAAATCTTGTTAGCTCTCTCGAACTC]
[+] EMBL BU805633 [AGTAGCGGACGGTGAAGGTTACCTGCTTCAACAGTGTTTGAACGGCAACCTTTTATCTGCCACTCTAATCCCACGCGAGTAATTTACTAGCAAATATCGCAACGTATCATCGACGCTAAGCAAAAAAAAACAACAACGCAGTAATTGGCTCGAATCTCTCACACGTTCTTAGCTAGCAAGGCAGTGTTGTTTTGCTAACGACGCAAGCGGATCCAGCAGCTCTTCTACTCCATCACCGTAAGACCCGACACTGAAATTTGGAACAATGAGTTCCCAGGTGAGACAGAACTTCC ]
[+] EMBL CA330350 [ CCTGCTTCAACAGTGCTTGAACGGCAACCTTTTATCTGCCACTCTAATTCCACGCGAGTAATTTACTAGCAAATATCGCAACGTATCATCGACGCT ]
[+] EMBL CA330506 [ AACAGTGCTTGAACGGCAACCTTTTATCTGCCACTCTAATTCCACGCGAGTAATTTACTAGCAAATATCGCAACGTATCATCGACGCTAAGCAAAAAAAAACAACAACGCAGTAATTGGCTCGAATCTCTCACACGTTCTTAGCTAGCAAGGCAGTGTTGTTTTGCTAACGACGCAAGCGGATCCAGCAGCTCTTCTACTCCATCACCGTAAGACCCGACACTGAAATTTGGAACAATGAGTTCCCAGGTGAGACAGAACTTCCACCAGGACTGTGAGGCTGCCATCAACAGGCAGATCAATCTGGAGCTGTATGCCTCCTATGTCTACCTGTCAATGTCCTATTACTTTGACCGGGATGACCAGGCATTGCACAACTTTGCCAAGTTTTTCCGCCATCAGTCACATGA GGAGCGTGAGCATGCCGAGAAGCTA ]
[+] EMBL FR0057627 [ TGAACGGCAACCTTTTATCTGCCACTCTAATTCCACGCGAGTAATTTACTAGCAAATATCGCAACGTATCATCGACGCTAAGCAAAAAAAAACAACAACGCAGTAATTGGCTCGAATCTCTCACACGTTCTTAGCTAGCAAGGCAGTGTTGTTTTGCTAACGACGCAAGCGGATCCAGCAGCTCTTCTACTCCATCACCGTAAGACCCGACACTGAAATTTGGAACAATGAGTTCCCAGGTGAGACAGAACTTCCACCAGGACTGTGAGGCTGCCATCAACAGGCAGATCAATCTGGAGCTGTATGCCTCCTATGTCTACCTGTCAATGTCCTATTACTTTGACCGGGATGACCAGGCATTGCACAACTTTGCCAAGTTTTTCCGCCATCAGTCACATGA GGAGCGTGAGCATGCCGAGAAGCTAATGAAAATGCAGAACCAGAGAGGAGGGAGGATCTTCCTGCAAGATGTCAGGAAACCAG ]
[+] EMBL FR0056971 [ CAACCTTTTAGCTGCCACTCTAATTCCACGCGAGTAATTTACTAGCAAATATCGCAACGTAGCATCGACGCTAAGCAAGGGGAACCAGCAGCGCAGTAATTGGGTCGAATCTCTCACACGTTCTTAGCTAGCAGGGCAGTGTTGGTTTGCTAACGACGCAAGCGGATCCAGCAGCTCTTCTACTCCAGCACCGTAAGACCCGAGACTGAAATTTGGGACAGTGAGTTCCCAGGTGAGACAGAACTTCCACCAGGACTGTGAGGCTGCCATCAGCAGGCAGGTCAGTCTGGAGCTGTATGCGTCCTATGTCTACCTGGCAATGTCCTATTACTTTGGCCGGGATGACCAGGCATTGCACAACTTTGCGAGGTTTTTCAGCCATCAATCAGATGAGGGAGCGT ]
[+] EMBL CA845447 [ TCCACGCGAGTAATTTACTAGCAAATATCGCAACGTATCATCGACGCTAAGCAAAAAAAAACAACAACGCAGTAATTGGCTCGAATCTCTCACACGTTCTTAGCTAGCAAGGCAGTGTTGTTTTGCTAACGACGCAAGCGGATCCAGCAGCTCTTCTACTCCATCACCGTAAGACCCGACACTGAAATTTGGAACAATGTGTTCCCAGGTGAGACAGAACTTCCACCAGGACTGTGAGGCTGCCATCAACAGGCAGATCAATCTGGAGCTGTATGCCTCCTATGTCTACCTGTCAATGTCCTATTACTTTGACCGGGATGACCAGGCATTGCACAACTTTGCCAAGTTTTTCCGCCATCAGTCACATGA GGAGCGTGAGCATGCCGAGAAGCTAATGAAAATGCAGAACCAGAGAGGAGGGAGGATCTTCCTGCAAGATGTCAGGAAACCAAAGCGTGATGAGTGGGGCAGTGGAATGGAAGCCCTTGAATGTGCCCTGCAGCTTGAGAAGAGTGTGAACCAGTCGCTGCTGGACTTGCACAAGATGTGCTCTGATCACAACGACCCCCATTTGTGCGATTTC ]
[+] EMBL FR0055171 [ ATCAACAGGCAGATCAATCTGGAGCTGTATGCCTCCTATGTCTACCTGTCAATGTCCTATTACTTTGACCGGGATGACCAGGCATTGCACAACTTTGCCAAGTTTTTCCGCCATCAGTCACATGA GGAGCGTGAGCATGCCGAGAAGCTAATGAAAATGCAGAACCAGAGAGGAGGGAGGATCTTCCTGCAAGATGTCAGGAAACCAGAGCGTGATGAGTGGGGCAGTGGCATGGAAGCCCTTGAATGTGCCCTGCAGCTTGAGAAGAGTGTGAACCAGTCGCTGCTGGACTTGCACAAGATGTGCTCTGATCACAACGACCCCCATTTGTGCGATTTCATCGAGACACATTTCCTGGACGAGCAAGTGAAGTCTATCAAAGAACTGGCAGACTGGGTGACCAACCTGCGGCGCATGGGGGCTCCCCAGAACGGCATGGCCGAATACCTGTTTGACAAACACACTCTTGGNAAAGAGAGCAGCTAAATGGCAAAATGTCAATGAAGCTTTTTGCGTGTATGTTTGCATCTTGCTTTCACAGTCTAAAG CATCAGCATGACACCGGTC ]
[+] EMBL FR0056300 [ GGGAGGATCTTCCTGCAAGATGTCAGGAAACCAGAGCGTGATGAGTGGGGCAGTGGAATGGAAGCCCTTGAATGTGCCCTGCAGCTTGAGAAGAGTGTGAACCAGTCGCTGCTGGACTTGCACAAGATGTGCTCTGATCACAACGACCCCCATTTGTGCGATTTCATCGAGACACATTTCCTGGACGAGCAAGTGAAGTCTATCAAAGAACTGGCAGACTGGGTGACCAACCTGCGGCGCATGGGGGCTCCCCAGAACGGCATGGCCGAATACCTGTTTGACAAACACACTCTTGGCAAAGAGAGCAGCTAAATGGCAAAATGTCAATGAAGCTTTTTGTGTGTATGTTTGCATCTTGCTTTCACAGTCTAAAGCCATCAGCATGACACCGGCCATGAATATTTAGCCACTTCTATATATTCTTAATTTAAAGGCTGTTATTGTTTCTATCATCTTCTATTAGAACCCTGACACATAAATCTTGTTAGCTCTCTCGAACTC]
[+] EMBL FR0055914 [ CTGCAAGATGTCAGGAAACCAGAGCGTGATGAGTGGGGCAGTGGAATGGAAGCCCTTGAATGTGCCCTGCAGCTTGAGAAGAGTGTGAACCAGTCGCTGCTGGACTTGCACAAGATGTGCTCTGATCACAACGACCCCCATTTGTGCGATTTCATCGAGACACATTTCCTGGACGAGCAAGTGAAGTCTATCAAAGAACTGGCAGACTGGGTGACCAACCTGCGGCGCATGGGGGCTCCCCAGAACGGCATGGCCGAATACCTGTTTGACAAACACACTCTTGGCACAGAGAGCAGCTAAATGGCACAATGTCAATGAAGCTTTTTGTGTGTATGTTTGCATCTTGCCTTCACAGTCT ]
consensusID : consensus_2638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[GGCTCGAATCTCTCACACGTTCTTAGCTAGCACAGTAGTGTTGTTTTGCTAACGAACCAAGCGGCTCCAGCAGTTCTTCTACACCATCACCGTAAGACACGACACTGATGATTTGGAACAATGAGTTCCCAGGTGCGACAGTACTTCCACCAGGACTGTGATGCTGCCATCAAGAGGCACATCAATCTGGAGCTGTATGCCTCCTATGTCGACCTGTCAATGTACTATTACGTTGAACGGGATGATGAGGTATTGCACAACGTTGAGATGTTTTTCCGCCATCAGTCACATGAGGATCGTTAGGATGGCGAGAAGCTGATGATCATGCAGAACCAGAGAGGCAGGATGATCTTCCTGCACGATGTCAGGTTACCACAGCGTGATGACTGTGGCAGTGTTATGGTAGCCCTTGAATGTGACCAGCATGTTGAGAATGGTGTGTATCAGTCGGTGCTGGTCGTGCACACGATGTGCTCTGAACAGAACGACCCCCATTTGTGCGAC]
[+] EMBL FR0055294 [GGCTCGAATCTCTCACACGTTCTTAGCTAGCACAGTAGTGTTGTTTTGCTAACGAACCAAGCGGCTCCAGCAGTTCTTCTACACCATCACCGTAAGACACGACACTGATGATTTGGAACAATGAGTTCCCAGGTGCGACAGTACTTCCACCAGGACTGTGATGCTGCCATCAAGAGGCACATCAATCTGGAGCTGTATGCCTCCTATGTCGACCTGTCAATGTACTATTACGTTGAACGGGATGATGAGGTATTGCACAACGTTGAGATGTTTTTCCGCCATCAGTCACATGAGGATCGTTAGGATGGCGAGAAGCTGATGATCATGCAGAACCAGAGAGGCAGGATGATCTTCCTGCACGATGTCAGGTTACCACAGCGTGATGACTGTGGCAGTGTTATGGTAGCCCTTGAATGTGACCAGCATGTTGAGAATGGTGTGTATCAGTCGGTGCTGGTCGTGCACACGATGTGCTCTGAACAGAACGACCCCCATTTGTGCGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2638#0 AGTAGCGGACGGTGAAGGTTACCTGCTTCAACAGTGCTTGAACGGCAACCTTTTATCTGC 60
consensus_2638#1 ------------------------------------------------------------
consensus_2638#0 CACTCTAATTCCACGCGAGTAATTTACTAGCAAATATCGCAACGTATCATCGACGCTAAG 120
consensus_2638#1 ------------------------------------------------------------
consensus_2638#0 CAAAAAAAAACAACAACGCAGTAATTGGCTCGAATCTCTCACACGTTCTTAGCTAGCAAG 180
consensus_2638#1 --------------------------GGCTCGAATCTCTCACACGTTCTTAGCTAGCACA 34
********************************
consensus_2638#0 GCAGTGTTGTTTTGCTAACGACGCAAGCGGATCCAGCAGCTCTTCTACTCCATCACCGTA 240
consensus_2638#1 GTAGTGTTGTTTTGCTAACGAACCAAGCGGCTCCAGCAGTTCTTCTACACCATCACCGTA 94
* ******************* ******* ******** ******** ***********
consensus_2638#0 AGACCCGACACTGA-AATTTGGAACAATGAGTTCCCAGGTGAGACAGAACTTCCACCAGG 299
consensus_2638#1 AGACACGACACTGATGATTTGGAACAATGAGTTCCCAGGTGCGACAGTACTTCCACCAGG 154
**** ********* ************************* ***** ************
consensus_2638#0 ACTGTGAGGCTGCCATCAACAGGCAGATCAATCTGGAGCTGTATGCCTCCTATGTCTACC 359
consensus_2638#1 ACTGTGATGCTGCCATCAAGAGGCACATCAATCTGGAGCTGTATGCCTCCTATGTCGACC 214
******* *********** ***** ****************************** ***
consensus_2638#0 TGTCAATGTCCTATTACTTTGACCGGGATGACCAGGCATTGCACAACTTTGCCAAGTTTT 419
consensus_2638#1 TGTCAATGTACTATTACGTTGAACGGGATGATGAGGTATTGCACAACGTTGAGATGTTTT 274
********* ******* **** ******** *** ********** *** * *****
consensus_2638#0 TCCGCCATCAGTCACATGAGGAGCGTGAGCATGCCGAGAAGCTAATGAAAATGCAGAACC 479
consensus_2638#1 TCCGCCATCAGTCACATGAGGATCGTTAGGATGGCGAGAAGCTGATGATCATGCAGAACC 334
********************** *** ** *** ********* **** **********
consensus_2638#0 AGAGAGGAGGGAGGATCTTCCTGCAAGATGTCAGGAAACCAGAGCGTGATGAGTGGGGCA 539
consensus_2638#1 AGAGAGGCAGGATGATCTTCCTGCACGATGTCAGGTTACCACAGCGTGATGACTGTGGCA 394
******* *** ************ ********* **** ********** ** ****
consensus_2638#0 GTGGAATGGAAGCCCTTGAATGTGCCCTGCAGCTTGAGAAGAGTGTGAACCAGTCGCTGC 599
consensus_2638#1 GTGTTATGGTAGCCCTTGAATGTGACCAGCATGTTGAGAATGGTGTGTATCAGTCGGTGC 454
*** **** ************** ** *** ******* ***** * ****** ***
consensus_2638#0 TGGACTTGCACAAGATGTGCTCTGATCACAACGACCCCCATTTGTGCGATTTCATCGAGA 659
consensus_2638#1 TGGTCGTGCACACGATGTGCTCTGAACAGAACGACCCCCATTTGTGCGAC---------- 504
*** * ****** ************ ** ********************
consensus_2638#0 CACATTTCCTGGACGAGCAAGTGAAGTCTATCAAAGAACTGGCAGACTGGGTGACCAACC 719
consensus_2638#1 ------------------------------------------------------------
consensus_2638#0 TGCGGCGCATGGGGGCTCCCCAGAACGGCATGGCCGAATACCTGTTTGACAAACACACTC 779
consensus_2638#1 ------------------------------------------------------------
consensus_2638#0 TTGGCAAAGAGAGCAGCTAAATGGCAAAATGTCAATGAAGCTTTTTGTGTGTATGTTTGC 839
consensus_2638#1 ------------------------------------------------------------
consensus_2638#0 ATCTTGCTTTCACAGTCTAAAGCATCAGCATGACACCGGCCATGAATATTTAGCCACTTC 899
consensus_2638#1 ------------------------------------------------------------
consensus_2638#0 TATATATTCTTAATTTAAAGGCTGTTATTGTTTCTATCATCTTCTATTAGAACCCTGACA 959
consensus_2638#1 ------------------------------------------------------------
consensus_2638#0 CATAAATCTTGTTAGCTCTCTCGAACTC 987
consensus_2638#1 ----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |