These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 642 fasta sequence [CTCAGTCAGTGTCGCAGCCCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATAT-GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGAAGCTTCAGCTGGACCTATTGCTGGGATTATCAGCGCTATCGGAGTCGCTGTGGTCGGAGCAGCATCC] [+] EMBL BU806908 [CTCAGTCAGTGTCGCAGCCCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGGGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGAT GATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGAC ] [+] EMBL BU806100 [ AGCCCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATAT GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGAAGCTTCAGCTGGACCTATTGCTGGGATTATCAGCGCTATCGGAGTC ] [+] EMBL BU806276 [ CCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATAT GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGAAGCTTCAGCTGGACCTATTGCTGGGATTATCAGCGCTATCGGAGTCGCTGTGG ] [+] EMBL BU804624 [ CGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATAT GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGGTGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGAAGCTTCAGCTGGACCTATTGCTGGGATTATCAGCGCTATCGGAGTCGCTGTGGTCGGAGCAGCATCC] [+] EMBL FR0063536 [ AAGCGTCGGTAAACATATAT GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGGTGACGCAGACCTGTTTGATGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGT ] [+] EMBL FR0060332 [ ACTTATAT GGGAAAAAGTAGCGGGGACGCCTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAAACCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCAC ] [+] EMBL FR0063136 [ TATAT GGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAGGAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGCTCTTGGTCCAGACCCCANACCCGACAAACCTCCTGTTGCCCCACCAAA ] consensusID : consensus_2646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 632 fasta sequence [CCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGGGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGGGGCAGCCAACATGAAGTTTCCTCTGGAGGCTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGA-TGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGGGGAACGTTCGGTGACGCAGACCTGTTTGATGTGGGTAAAGGGGATT-ACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGATCCCGACCTTCTGTGGGGCCAAATCCTGAAGATGCTAAATGCTAACATGCCAGAGGAGTTGTTTTTGTGGATTT] [+] EMBL CA591370 [CCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGGGGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGCTGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGA TGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGGTGACGCAGACCTGTTTGATGTGGGTAAAGGGGATT ACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGGGCACGATACTCAAGGTGGTGCCGATCAACCTCAAGATCCCGACCTTCTGTGGGGCCAAATCCTGAAGATGCTAAATGCTAACATGCCAGAGGAGTTGTTTTTGTGGATTT] [+] EMBL FR0059671 [ GTAGACGAGAATTTTGCAAAGGGGCATCCAACATTATATTTCCTCTGCACCCTCTTTCACTGCTTTTACTTGTCGCTGGGACATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCCCAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGA TGCTCTTGGGCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGA ] [+] EMBL FR0061277 [ TAAACTTGGAGGAGGGCTCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGATGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGCTGGGGGAACGTTCGGTGACGCATACCTGTTTGATGTGGGTAAAGGGGATTAACAAACCTGAGGGAGGGCGATCAGGGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2646#0 CTCAGTCAGTGTCGCAGCCCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGG 60 consensus_2646#1 ------------------CCGGCCGCCGGAGCACAAAGAAGCGTCGGTAAACATATATGG 42 ****************************************** consensus_2646#0 G-AAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGC 119 consensus_2646#1 GGAAAAAGTAGCGGGGACGCTTTGAAACGACTTTAAAAGTAGACGAGAATTTTGCAAAGG 102 * ********************************************************* consensus_2646#0 TGCAGCCAACATGAAGTTTCCTCTGGAGGTTCTTTCACTGCTTTTACTTGTCGCTGGGAC 179 consensus_2646#1 GGCAGCCAACATGAAGTTTCCTCTGGAGGCTCTTTCACTGCTTTTACTTGTCGCTGGGAC 162 **************************** ****************************** consensus_2646#0 ATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCC 239 consensus_2646#1 ATTAACGCAAGATCTGGACTTGGCTGATTTTTTTGATAATGATGCACCAACTGAAAAGCC 222 ************************************************************ consensus_2646#0 CAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGC 299 consensus_2646#1 CAAGGTCACCCAGAAGCCCAAAACTGATGTAGATGACTTTGGTCTAAACTTGGAGGATGC 282 ************************************************************ consensus_2646#0 TCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGA 359 consensus_2646#1 TCTTGGTCCAGACCCCAAACCCGACAAACCTCCTGTTGCCCCACCAAAACCAGGAGGAGA 342 ************************************************************ consensus_2646#0 TGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCC 419 consensus_2646#1 TGACTTTGATCTAAACTTGGAGGATGCTCTTAATCCAGACCCCAAACCCGACAAACCTCC 402 ************************************************************ consensus_2646#0 TGTTGCCCCACCAAAACCAGGAGGAGCTGGTGGAACGTTCGATGACGCAGACCTGTTTGA 479 consensus_2646#1 TGTTGCCCCACCAAAACCAGGAGGAGCTGGGGGAACGTTCGGTGACGCAGACCTGTTTGA 462 ****************************** ********** ****************** consensus_2646#0 TGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGG 539 consensus_2646#1 TGTGGGTAAAGGGGATTACAAACCTGAGGGAGGGCGATCAGGGGGTGCTGGGAATGCTGG 522 ************************************************************ consensus_2646#0 GCACGATACTCAAGGTGGTGCCGATCAACCTCAAGA-----AGCTTCAGCTGGACCTATT 594 consensus_2646#1 GCACGATACTCAAGGTGGTGCCGATCAACCTCAAGATCCCGACCTTCTGTGGGGCCAAAT 582 ************************************ * **** * ** ** * * consensus_2646#0 GCTGG-GATTATCAGCGCTA-----TCGGAGTCGCTGTGGTCGGAGCAGCATCC 642 consensus_2646#1 CCTGAAGATGCTAAATGCTAACATGCCAGAGGAGTTGTTTTTGTGGATTT---- 632 *** *** * * **** * *** * *** * * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |