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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 603 fasta sequence
[GACTCCAGGAGCTCTTCTCCTTTATTTCCTCCAGCTCCAACGCTCCAAAATGACCGAGTACACGCCAGACCAGATTGAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGGTGACAGTCAGGTGGCCTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGGCAGGAGGAGTGCTGAGGAAACTGTAGCTCGTCTACAGGCAGCCCGACGGTGTTCAGGACATCAACAACGCCGTGCCAAAGACCAACCAAGGAA]
[+] EMBL BU806669 [GACTCCAGCTTCTCTTCTCCTTTATTTCCTCCAGCTCCAACGCTCCAAAATGACCGAGTACACGCCAGACCAGATTAAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGGTGACAGTCAGGTGGCCTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGG ]
[+] EMBL FR0055134 [ GAGCTCTTCTCCTTTATTTCCTCCAGCTCCAACGCTCCAAAATGACCGAGTACACGCCAGACCAGATTGAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGGTGACAGTCAGGTGGCCTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGGCAG ]
[+] EMBL BU805170 [ TATTTCCTCCAGCTCCAACGCTCCAAAATGACCGAGTACACGCCAGACCAGATTGAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGGTGACAGTCAGGTGGCCTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGGCAGGAGGAGTGCTGAGGAAACTGTAGCTCGTCTACAGGCAGCCCGACGGTGTTCAGGACATCAACAACGCCGTGCCAAAGACCAACCAAGGAA]
[+] EMBL FR0055719 [ TCCAGCTCCAACGCTCCAGAATGACCGAGTACACGCCAGACCAGATTGAGGACTTCAAGGACGCGATTGGGCTCTTTGACAGAGTTGGCGACAGTCAGGTGGTCTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAGCCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGGACCTGAGATTTAGGCCCTCATGACCGGCCATGGGGACGAGAACGGGAGCGTGCACTATGAGGCTTTCGTCAAGCACATCAGGTCTGTGTAAG ]
[+] EMBL BU806841 [ ACCAGATTGAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGGTGACAGTCAAGTGGCCTTTCACCCAGTAGCCGACATCATGCGCGCTCTGGGCCAa ]
[+] EMBL FR0055555 [ TCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGCACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACATTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGTAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGGGAGGAGGAGTGCTGACGAAACTGTAGCTCGTCTACAGGCAGCCCGACGGAGTTCAGGACATCAAC ]
[+] EMBL FR0055532 [ AACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGTTGCAAAGATTCTGGGCAACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTGACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCCCAAGGGCACCGTCGACGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTGAGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTGAGCCTGAGATTGAGGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAAGCACATCATGTCTGTGTAAGAGGCCGGCAGGAGGAGTGCTGAGGAAACTGTAGCTCGTCTACAGGCAGCCCGACGGTGTTCAGGACATCAAC ]
consensusID : consensus_2652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[AGTGCTGCACTCCTTGTGTTGTCTCCGGAATTGCCTGTACATCAGGGACAAAGTACTTCAGCAGTTAATCTGAAATGGCACCCAAGAAGGACCCAAAGGCTCCTGTCAAGAAGGAGGCTCCTGCCAAGAAGGCCGAAGCTGCGCCTGCACCTGCTCCAGCGCCCGAGCCCGCCCCTGCCCCGAAGCCTGCCGCAGTCGACCTGTCCGCCGTCAAGATCGAGTTCTCCCCAGATCAGATTGAAGACTACTGGGAGGCTTTCGGACTCTTCGACAGAGTGGGAGACAACAAGGTGGCTTACAACCAGATCGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGAGGTGACCAAAATGCTGGGAAACCCCAACACTGAGGACATGGCCAACAAAAGAGTCGAGTTTGAGGGCTTTCTGCCCATGCTCCAGACCATCATCAACAGCCCAAACAAGGCTGGCTTTGAAGACTACGTTGAGGGTCTGCGTGTCTTCGACAAAGAGGGCAACGGCACAGTGATGGGCGCTGAGCTGCGCATTGTGCTGTCAACACTGGGAGAGAAGATGAATGAGGCTGAGATCGACGCT]
[+] EMBL CA589080 [AGTGCTGCACTCCTTGTGTTGTCTCCGGAATTGCCTGTACATCAGGGACAAAGTACTTCAGCAGTTAATCTGAAATGGCACCCAAGAAGGACCCAAAGGCTCCTGTCAAGAAGGAGGCTCCTGCCAAGAAGGCCGAAGCTGCGCCTGCACCTGCTCCAGCGCCCGAGCCCGCCCCTGCCCCGAAGCCTGCCGCAGTCGACCTGTCCGCCGTCAAGATCGAGTTCTCCCCAGATCAGATTGAAGACTACTGGGAGGCTTTCGGACTCTTCGACAGAGTGGGAGACAACAAGGTGGCTTACAACCAGATCGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGAGGTGACCAAAATGCTGGGAAACCCCAACACTGAGGACATGGCCAACAAAAGAGTCGAGTTTGAGGGCTTTCTGCCCATGCTCCAGACCATCATCAACAGCCCAAACAAGGCTGGCTTTGAAGACTACGTTGAGGGTCTGCGTGTCTTCGACAAAGAGGGCAACGGCACAGTGATGGGCGCTGAGCTGCGCATTGTGCTGTCAACACTGGGAGAGAAGATGAATGAGGCTGAGATCGACGCT]
consensusID : consensus_2652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 504 fasta sequence
[TCTACAGGCAGCCCGACGGTGTTCAGAACATCAACAACGCCGTGCCAAAGACCAACCAAGGAAAGACAAGGACTATGAACAAGGGATATTGAAGCGAACCCATCTTGTTGCATTTTGTTTTCCTTTCATTTCAAACCCTCCTCTGTCTCGGAACATCTCCATCACCTCTCCGCTGTAGATCCCCACCTATCACTCGGCCTCTGCTCCCCCAGGGGCACGTCTCCACTTGCCGCATGGGGTGAGAAACGGGGGAGAAGGGGTGACCGCTCATCAAGTGAGGGTAGATCCCTCCCTTCCCACCGCCACCTCATTCAGTCACGCCATCACTGACCCAGCAGTGCCAAAGGTGCTGGAGAAAGGTCGTGGTCAGACCGCCACACATCTCCCCACTTCCCTCAGAAGATTTAGTTATTGTCATTCTGTTCATTTCAGGATAAACTTTTCCAACTTACATCCCAAAAGAAAAACAGAAAAACCTCAGGGGGGGCCCGGGAACCAAGTTTT]
[+] EMBL FR0055379 [TCTACAGGCAGCCCGACGGTGTTCAGAACATCAACAACGCCGTGCCAAAGACCAACCAAGGAAAGACAAGGACTATGAACAAGGGATATTGAAGCGAACCCATCTTGTTGCATTTTGTTTTCCTTTCATTTCAAACCCTCCTCTGTCTCGGAACATCTCCATCACCTCTCCGCTGTAGATCCCCACCTATCACTCGGCCTCTGCTCCCCCAGGGGCACGTCTCCACTTGCCGCATGGGGTGAGAAACGGGGGAGAAGGGGTGACCGCTCATCAAGTGAGGGTAGATCCCTCCCTTCCCACCGCCACCTCATTCAGTCACGCCATCACTGACCCAGCAGTGCCAAAGGTGCTGGAGAAAGGTCATGGTCAGACCGCCACACATCTCCCCACTTCCCTCAGAAGATTTAGTTATTGTCATTCTGTTCATTTCAGGATAAACTT ]
[+] EMBL FR0055166 [ TTCAAACCCTCCTCTGTCTCGGAACATCTCCATCACCTCTCCGCTGTAGATCCCCACCTATCACTCGGCCTCTGCTCCCCCAGGGGCACGTCTCCACTTGCCGCATGGGGTGAGAAACGGGGGAGAAGGGGTGACCGCTCATCAAGTGAGGGTAGATCCCTCCCTTCCCACCGCCACCTCATTCAGTCACGCCATCACTGACCCAGCAATGCCAAAGGTGCTGGAGAAAGGTCGTGGTCAGACCGCCACACATCTCCCCACTTCCCTCAGAAGATTTATTTATTGTCATTCTGTTCATTTCAGAATAAACTTTTCCAACTTACATCCCAAAAGAAAAACAGAAAAACCTCAGGGGGGGCCCGGGAACCAAGTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2652#0 ------------------------------------------------------------
consensus_2652#1 AGTGCTGCACTCCTTGTGTTGTCTCCGGAATTGCCTGTACATCAGGGACAAAGTACTTCA 60
consensus_2652#2 ------------------------------------------------------------
consensus_2652#0 ------------------------------------------------------------
consensus_2652#1 GCAGTTAATCTGAAATGGCACCCAAGAAGGACCCAAAGGCTCCTGTCAAGAAGGAGGCTC 120
consensus_2652#2 ------------------------------------------------------------
consensus_2652#0 --------------------------------------GACTCCAGGAGCTCTTCTCCTT 22
consensus_2652#1 CTGCCAAGAAGGCCGAAGCTGCGCCTGCACCTGCTCCAGCGCCCGAGCCCGCCCCTGCCC 180
consensus_2652#2 -----------------------------------------TCTACAGGCAGCCCGACGG 19
* * * *
consensus_2652#0 TATTTCCTCCAGCT-----CCAACGCTCCAAAATGACCGAGTACACGCCAG-ACCA-GAT 75
consensus_2652#1 CGAAGCCTGCCGCAGTCGACCTGTCCGCCGTCAAGATCGAGTTCTCCCCAG-ATCA-GAT 238
consensus_2652#2 TGTTCAGAACATCAACAACGCCGTGCCAAAGACCAACCAAGGAAAGACAAGGACTATGAA 79
* * * * * * ** * ** * * **
consensus_2652#0 TGAGGACTTCAAGGAGGCGTTTGGTCTCTTTGACAGAGTTGG--TGACAGT-CAGGTGGC 132
consensus_2652#1 TGAAGACTACTGGGAGGCTTTCGGACTCTTCGACAGAGTGGG--AGACAAC-AAGGTGGC 295
consensus_2652#2 CAAGGGATATTGAAGCGAACCCATCTTGTTGCATTTTGTTTTCCTTTCATTTCAAACCCT 139
* * * * * ** * ** ** *
consensus_2652#0 CTTCAACCAGGTAGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGATGT 192
consensus_2652#1 TTACAACCAGATCGCCGACATCATGCGCGCTCTGGGCCAGAACCCCACCAACAAGGAGGT 355
consensus_2652#2 CCTCTGTCTCGGAAC-ATCTCCATCACCTCTCCGCTGTAGATCCCCACCTATCACTCGGC 198
* * * * *** * *** * *** ******* * * *
consensus_2652#0 TGCAAAGATTCTGGGCA-ACCCTTCCGCTGACGACATGGCCAACAAGAGGCTCAACTTTG 251
consensus_2652#1 GACCAAAATGCTGGGAA-ACCCCAACACTGAGGACATGGCCAACAAAAGAGTCGAGTTTG 414
consensus_2652#2 CTCTGCTCCCCCAGGGGCACGTCTCCACTTGCCGCATGGGGTGAGAAACGGGGGAG---A 255
* * ** ** * ** ***** * * *
consensus_2652#0 ACGCTTTCCTGCCCATGCTGAAGGAGGTGGACTCCCTTCC---CAAGGGCACCGTCGACG 308
consensus_2652#1 AGGGCTTTCTGCCCATGCTCCAGACCATCATCAACAGCCCAAACAAGGCTGGCTTTGAAG 474
consensus_2652#2 AGGGGTGACCGCTCAT-CAAGTGAGGGTAGATCCCTCCCTTCCCACCGCCACCTCATTCA 314
* * * * ** *** * * * * * ** * *
consensus_2652#0 ACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACAGTCATGGGCGCTG 368
consensus_2652#1 ACTACGTTGAGGGTCTGCGTGTCTTCGACAAAGAGGGCAACGGCACAGTGATGGGCGCTG 534
consensus_2652#2 GTCACGCCATCACTGACC-CAGCAGTGCCAAAG-GTGCTGGAGAAAGGTCGTGGTCAGAC 372
*** * * * * *** * * ** * * ** *** *
consensus_2652#0 AGCTGCGCATTGTGCTGTCCACCCTGGGAGAGAAGATGTCTG--AGCCTG---AGATTGA 423
consensus_2652#1 AGCTGCGCATTGTGCTGTCAACACTGGGAGAGAAGATGAATG--AGGCTG---AGATCGA 589
consensus_2652#2 CGCCACACATCTCCCCACTTCCCTCAGAAGATTTAGTTATTGTCATTCTGTTCATTTCAG 432
** * *** * * * *** * ** * *** * *
consensus_2652#0 GGCCCTCATGACCGGCCAGGAGGACGAGAACGGCAGCGTGCACTATGAGGCTTTCGTCAA 483
consensus_2652#1 CGCT-------------------------------------------------------- 593
consensus_2652#2 GATAAACTTTTCCAACTTACATCCCAAAAGAAAAACAGAAAAACCTCAGGGGGGGCCCGG 492
consensus_2652#0 GCACATCATGTCTGTGTAAGAGGCCGGCAGGAGGAGTGCTGAGGAAACTGTAGCTCGTCT 543
consensus_2652#1 ------------------------------------------------------------
consensus_2652#2 GAACCAAGTTTT------------------------------------------------ 504
consensus_2652#0 ACAGGCAGCCCGACGGTGTTCAGGACATCAACAACGCCGTGCCAAAGACCAACCAAGGAA 603
consensus_2652#1 ------------------------------------------------------------
consensus_2652#2 ------------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |