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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1328 fasta sequence
[CAACATTTATGACCTATGCTGAACAGAATGAATGGCCTGAGATGAGTGAGGGTACGGTTGGATAACCAACATTAGAAGAGCCGCACGCTGTTCCGCTTGATAATTCTCCCACACTGTGGCCACTGTTTGCATCACAGGCAGATATTTAGATTTAATCCAACATTCACCGTGTGTCTTGAGGGGCCTTGAGCACAGCTGAAGGGTGTGTCTTAAGGGGGAATCGGGCCGGATAACCTTGGCCCAGGATGACAGAGGCTGATTTAGACACTCACAATAAACTCCAACCACACATAAGTTTGAAACATTTCATCAGCCGTCGATGATGGCGCCTTTAAAGTGCGTCAGGTCCCGTTTTCCCCAAGGTGATCTGTGTCTGTGTGTCTGTAACAAACACGGTGGTTCTGCAGAGGTCAGCAGGGGTGGGGCTCAGTGTCCCGGGTTCACCGTCTGGTCAGTACCGAACAGGCTGCCCAGTGGGAGGATCATGTCATCCATCTTTATTTCTGCCAGCATCGTGTGAATTTGGGGGGAAAAAAACAACATTCTGATATGTGAAGCTTTTACAGTTTATAGAAAAATGATTAGTCACACTTTAAACAAGAGTTTTCTTCTTATTTTGAGTTACAATATTGAAAAGATGAAATCTGAGTTTCTTGATGGATAAAAAAAAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCAGTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGGGGTGGGTCCAAAGTCTCACCTTGAACCATTGTTGTGACACTTATCGTGCTTGAGTGTAACAGCTGCTCTGTAGGTGTTCATATTGCTCCAGCCTGAACTTTTTTTTTCTTTTTTTTCTTAAAATCACCGTTTTATAGCCTCCCATTATAACCCATCACACCGTCAGCAGTTTTACTCTCCTCATTGGTCTCTTTGGTTGAGCAA]
[+] EMBL CA589015 [CAACATTTATGACCTATGCTGAACAGAATGAATGGCCTGAGATGAGTGAGGGTACGGTTGGATAACCAACATTAGAAGAGCCGCACGCTGTTCCGCTTGATAATTCTCCCACACTGTGGCCACTGTTTGCATCACAGGCAGATATTTAGATTTAATCCAACATTCACCGTGTGTCTTGAGGGGCCTTGAGCACAGCTGAAGGGTGTGTCTTAAGGGGGAATCGGGCCGGATAACCTTGGCCCAGGATGACAGAGGCTGATTTAGACACTCACAATAAACTCCAACCACACATAAGTTTGAAACATTTCATCAGCCGTCGATGATGGCGCCTTTAAAGTGCGTCAGGTCCCGTTTTCCCCAAGGTGATCTGTGTCTGTGTGTCTGTAACAAACACGGTGGTTCTGCAGAGGTCAGCAGGGGTGGGGCTCAGTGTCCCGGGTTCACCGTCTGGTCAGTACCGAACAGGCTGCCCAGTGGGAGGATCATGTCATCCATCTTTATTTCTGCCAGCATCGTGTGAAT ]
[+] EMBL BU807788 [ TGTCTTGAGGGGCCTTGAGCACAGCTGAAGGGTGTGTCTTAAGGGGGAATCGGGCCGGATAACCTTGGCCCAGGATGACAGAGGCTGATTTAGACACTCACAATAAACTCCAACCACACATAAGTTTGAAACATTTCATCAGCCGTCGATGATGGCGCCTTTAAAGTGCGTCAGGTCCCGTTTTCCCCAAGGTGATCTGTGTCTGTGTGTCTGTTACAAACACGGTGGTTCTGCAGAGGTCAGCAGGGGTGGGGCTCAGTGTCCCGGGTTCACCGTCTGGTCAGTACCGAACAGGCTGCCCAGTGGGAGGATCATGTCATCCATCTTTATTTCTGCCAGCATCGTGTGAATTTGGGGGGAAAAAAACAACATTCTGATATGTGAAGCTTTTACAGTTTATAGAAAAATGATTAGTCACACTTTAAACAAGAGTTTTCTTCTTATTTTGAGTTACAATATTGAAAAGATGAAATCTGAGTTTCTTGATGGATAAAAAAAAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAA ]
[+] EMBL FR0061450 [ AAAATGATTAGTCACACTTTAAACAAGAGTTTTCTTCTTATTTTGAGTTACAATATTGAAAAGATGAAATCTGAGTTTCTTGATGGATAAAAAAAAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCAGTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGT ]
[+] EMBL FR0062034 [ TTCTTGATGGATAAAAAAAAAAGACATTATTTTGGTTTGTATGGATATTAGACACATTGATTATGAACCAGTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTA ]
[+] EMBL BU808563 [ TTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCCGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGTGGTGGTTCCAAAGTCTCACCTTGAACCATTGTTGTGACACTTATCGTGCTTGAGTGTAACAGCTGCTCTGTAGGTGTTCATATTGCTCCAGCCTGAACTTTTTTTTTCTTTTTTTTCTTAAAATCACCGTTTTATAGCCTCCCATTATAACCCATCACACCGTCAGCAGTTTTACTCTCCTCATTGGTCTCTTTGGTTGAGCAA]
[+] EMBL FR0061120 [ CTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGGGGTGGGTCCAAAGTCTCACCTTGAACCAT ]
consensusID : consensus_2653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 554 fasta sequence
[CCCATTAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCAGTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGTGGGGGGTCCAAAGTCTCACCTTGAACCATTGTTGTGTGTAACAGCTGCTCTGTAGGTGTTCATATTGCTCCAGCCTGAACTTTTTTTTTTCTT]
[+] EMBL CA846224 [CCCATTAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCAGTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTGAACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTACACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGACAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGTGGTGGTTCCAAAGTCTCACCTTGAACCATTGTTGTGTGTAACAGCTGCTCTGTAGGTGTTCATATTGCTCCAGCCTGAACTTTTTTT ]
[+] EMBL FR0061638 [ GCGAGGAGGGGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGGATCCTCTTGATTCTAA ]
[+] EMBL FR0061665 [ GGGCTCCGCTTCGTGTCGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGT GGGGCTCCAAAGTCTCACCTTGAACCATTGTTGTGTGTAACAGCTGCTCTGTAGGTGTTCATATTGCTCCAGCCTGAACTTTTTTTTTTCTT]
[+] EMBL FR0061934 [ CCCGTTCTTCTCACTGTGTTTTGATTAGAAGGGGGGTCCAGGCTCAAACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAGTTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGACCACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTATACTAGGCAAAACACTGACGAATGTATCCTCTTGAGTCTAACTGTGGGTGGTCCAAAGCCTCACCTTGAACCATTGTTGTGTGTAACAGCTGCTCTGTAGGTGGTCATATTGTTCCAGCCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2653#0 CAACATTTATGACCTATGCTGAACAGAATGAATGGCCTGAGATGAGTGAGGGTACGGTTG 60
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 GATAACCAACATTAGAAGAGCCGCACGCTGTTCCGCTTGATAATTCTCCCACACTGTGGC 120
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 CACTGTTTGCATCACAGGCAGATATTTAGATTTAATCCAACATTCACCGTGTGTCTTGAG 180
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 GGGCCTTGAGCACAGCTGAAGGGTGTGTCTTAAGGGGGAATCGGGCCGGATAACCTTGGC 240
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 CCAGGATGACAGAGGCTGATTTAGACACTCACAATAAACTCCAACCACACATAAGTTTGA 300
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 AACATTTCATCAGCCGTCGATGATGGCGCCTTTAAAGTGCGTCAGGTCCCGTTTTCCCCA 360
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 AGGTGATCTGTGTCTGTGTGTCTGTAACAAACACGGTGGTTCTGCAGAGGTCAGCAGGGG 420
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 TGGGGCTCAGTGTCCCGGGTTCACCGTCTGGTCAGTACCGAACAGGCTGCCCAGTGGGAG 480
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 GATCATGTCATCCATCTTTATTTCTGCCAGCATCGTGTGAATTTGGGGGGAAAAAAACAA 540
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 CATTCTGATATGTGAAGCTTTTACAGTTTATAGAAAAATGATTAGTCACACTTTAAACAA 600
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 GAGTTTTCTTCTTATTTTGAGTTACAATATTGAAAAGATGAAATCTGAGTTTCTTGATGG 660
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 ATAAAAAAAAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCA 720
consensus_2653#1 ---CCCATTAAAGACATTATTTTGTTTTGTATGGATATTAGACACATTGATTATGAACCA 57
* ***************************************************
consensus_2653#0 GTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTG 780
consensus_2653#1 GTCACAGACTGGTGTTCTGGAGACTTTTTTGTGCTTTGAGCCAAAATGAAAATCATCTTG 117
************************************************************
consensus_2653#0 AACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGT 840
consensus_2653#1 AACTGTCAAAGAATATAGTATAGTTCTCTGCATTGGCGAGGAGGGGGCTCCGCTTCGTGT 177
************************************************************
consensus_2653#0 CGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAA 900
consensus_2653#1 CGTGCCATAAAGGCCCGTTCTTCTCACTGTGTTTTGATTAGAAGGTGGGTCCAGGCTCAA 237
************************************************************
consensus_2653#0 ACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAG 960
consensus_2653#1 ACCCAACACAGGGTGTGTAGATATGTACTAGACGGTGTGTAAATGTGTGTGTCAGTCTAG 297
************************************************************
consensus_2653#0 TTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGAC 1020
consensus_2653#1 TTGTGATGCAGTACTTTCTCCTCCAGTACCTTTTACTGGCACTGCCTGGCTTGACCAGAC 357
************************************************************
consensus_2653#0 CACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTAT 1080
consensus_2653#1 CACAGACGCAGAGGAAGGAGAGTTTAACGTGTAAAAAGAGAAAGTAGTAAATGAATGTAT 417
************************************************************
consensus_2653#0 ACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGGGGTGGGTCCAAAGTCT 1140
consensus_2653#1 ACTAGGCAAAACACTGACGAATGTATCCTCTTGATTCTAACTGTGGGGGGTCCAAAGTCT 477
******************************************* ** *************
consensus_2653#0 CACCTTGAACCATTGTTGTGACACTTATCGTGCTTGAGTGTAACAGCTGCTCTGTAGGTG 1200
consensus_2653#1 CACCTTGAACCATTGTTGTG------------------TGTAACAGCTGCTCTGTAGGTG 519
******************** **********************
consensus_2653#0 TTCATATTGCTCCAGCCTGAACTTTTTTTTTCTTTTTTTTCTTAAAATCACCGTTTTATA 1260
consensus_2653#1 TTCATATTGCTCCAGCCTGAACTTTTTTTTTTCTT------------------------- 554
******************************* **
consensus_2653#0 GCCTCCCATTATAACCCATCACACCGTCAGCAGTTTTACTCTCCTCATTGGTCTCTTTGG 1320
consensus_2653#1 ------------------------------------------------------------
consensus_2653#0 TTGAGCAA 1328
consensus_2653#1 --------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |