These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 851 fasta sequence [GCTAGCTCCAGCAGCGCTGTCTACCAGCTGCCTCCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG-AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTCCACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATCCGCCAGGAGCAGGAGCTGAAGAAGAAGGAGGCGGAGGAGCAGAAGAAGCGGCAGGCTGCCTTCAAAGAGAAGCAGTCGGCTTTCAAGTGACCGCCCGTCTCCGGTCGGCCTCGGGCTGCTCCAGCGCCCGTTTCCTTCATGCTTTACTCTCGGACGACCGTCAAACTGCTGCGATTCTGCTCAAACCACATTTATCTAATTCGTGTGCTGGC] [+] EMBL BU806039 [GCTAGCTCCAGCAGCGCTGTCTACCAGCTGCCTCCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCC ] [+] EMBL CA589719 [ CTCCAGCAGCGCTGTCTACCAGCTGCCTCCTTCCAACATGACCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGGCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAAGAGCCCAGTCCTTC ] [+] EMBL BU807595 [ AGCAGCGCTGTCTACCAGCTGCCTCCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTCCACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATC ] [+] EMBL BU805770 [ AGCTGCCTCCTTCCAACATGGCCACAGACGAACTCCCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTCCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGTGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTC ] [+] EMBL CA332916 [ CCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCTCGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCAGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTCCACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATC ] [+] EMBL BU807896 [ CCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGG AGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTCCACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATCCGCCAGGAGCAGGAGCTGAAG AGAAGGAGGCGGAGGAGC ] [+] EMBL CA846215 [ ctttAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGGTAGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCAGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTCCACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATCCGCCAGGAGCAGGAGCTGAAGAAGAAGGAGGCGGAGGAGCAGAAGAAGCGGCAGGCTGCCTTCAAAGAGAAGCAGTCGGCTTTCAAGTGACCGCCCGTCTCCGGTCGGCCTCGGGCTGCTCCAGCGCCCGTTTCCTTCATGCTTTACTCTCGGACGACCGTCAAACTGCTGCGATTCTGCTCAAACCACATTTATCTAATTCGTGTGCTGGC] consensusID : consensus_2654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 623 fasta sequence [CTGCCTCCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGAGCGAGGAGGGAACCGCGGAGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAA-GGCAGCAGCGGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTAGGTGAAACCTTCAGACATCTGTCGGTCACAGCTGAGACCAGAAGAGCATT] [+] EMBL CA589027 [CTGCCTCCTTCCAACATGGCCACAGACGAACTCTCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGGAGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAA GGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTCGAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTAGGTGAAACCTTCAGACATCTGTCGGTCACAGCTGAGACCAGAAGAGCATT] [+] EMBL FR0063090 [ GCCACAGACGAACTCTCGTTCAAGCTCAGCCACCGGCTCCAGAGCGAGGAGGGAACCGCGGAGCCCGTAGCCGTGGACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACG ] [+] EMBL FR0058417 [ TTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTGTCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCCAAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATGGAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATGAAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTCAGGAAGGGCAGCACCGGAAGAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2654#0 GCTAGCTCCAGCAGCGCTGTCTACCAGCTGCCTCCTTCCAACATGGCCACAGACGAACTC 60 consensus_2654#1 ---------------------------CTGCCTCCTTCCAACATGGCCACAGACGAACTC 33 ********************************* consensus_2654#0 TCGTCCAAGCTCAGCCACCGGCTCCAGATCGAGGAGGGAACCGCGGAGCCCGTAGCCGTG 120 consensus_2654#1 TCGTCCAAGCTCAGCCACCGGCTCCAGAGCGAGGAGGGAACCGCGGAGCCCGTAGCCGTG 93 **************************** ******************************* consensus_2654#0 GACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTG 180 consensus_2654#1 GACGTGCCCCGACCGCTGGACAGTTCTGATGAAAAGGTGAGCAACGCGGACGCGGAGCTG 153 ************************************************************ consensus_2654#0 TCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCC 240 consensus_2654#1 TCTGCGATGCTGAGCAGGAGAGAGGCGCTGAACCAGGGGCAGGACCAGCCCCGGAGCTCC 213 ************************************************************ consensus_2654#0 AAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATG 300 consensus_2654#1 AAGGTCTTCAACCCCTACACCGAGTTCAAAGAGTTCTCACGGAAGCACATCAAGGACATG 273 ************************************************************ consensus_2654#0 GAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTG 360 consensus_2654#1 GAGCGAGAGTTCTCCAAGTACGACGTGAACAAGGACCACTACATCGACATGATGGAGCTG 333 ************************************************************ consensus_2654#0 AAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATG 420 consensus_2654#1 AAGCTGATGATGGAGAAGCTGGGACAGCCACAGACCCATTTGGGCTTGAAGAACATGATG 393 ************************************************************ consensus_2654#0 AAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTC 480 consensus_2654#1 AAAGAGGTGGACGAGGACCTGGACTCTAGGCTCAGCTTCAGAGAGTTCCTGCTCATCTTC 453 ************************************************************ consensus_2654#0 AGGAAGGCAGCAGCCGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTC 540 consensus_2654#1 AGGAAGGCAGCAGCGGGAGAGCTGGCGGACAGCGGGCTGTGCGCGCTGGCCGGGCTCTTC 513 ************** ********************************************* consensus_2654#0 GAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGTC 600 consensus_2654#1 GAGATCGACGTGTCCTCGGAGGGCGTCAAAGGAGCCAAGTCCTTCTTCGAAGCTAAAGT- 572 *********************************************************** consensus_2654#0 CACGCCGTGGGCGCGTCCAGCCGCTTCGAGGAGGAGATCCGCCAGGAGCAGGAGCTGAAG 660 consensus_2654#1 ----AGGTGAAACCTTCAGACATCTGTCGGTCACAGCTGAGACCAGAAGAGCATT----- 623 *** * ** * ** * ** * * * ** ** * consensus_2654#0 AAGAAGGAGGCGGAGGAGCAGAAGAAGCGGCAGGCTGCCTTCAAAGAGAAGCAGTCGGCT 720 consensus_2654#1 ------------------------------------------------------------ consensus_2654#0 TTCAAGTGACCGCCCGTCTCCGGTCGGCCTCGGGCTGCTCCAGCGCCCGTTTCCTTCATG 780 consensus_2654#1 ------------------------------------------------------------ consensus_2654#0 CTTTACTCTCGGACGACCGTCAAACTGCTGCGATTCTGCTCAAACCACATTTATCTAATT 840 consensus_2654#1 ------------------------------------------------------------ consensus_2654#0 CGTGTGCTGGC 851 consensus_2654#1 ----------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |