|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 792 fasta sequence
[AAATAAGTCGGAACCGAGTAGCGGGTCCGAGAAGAACCACCGCGGCCTGGGATCGACTGAAGCTTTCCGAGTGTTTTCACAGATTTTTCCATCACTGTGATAGAGGCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGGGTGGCTAAGGTGGCCGAATGGCAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGCCACCACAGTCAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGTCACGAGGGAAGAACCTGACTATGAGATCACGACAAGATCCCACCGGG-TGCGAGCTGCGATGTTCCCAGAGAC-ACTGGAGTCGGGTTCCACCATGTTGTTGACTCCAAAAGACCCAGCTGAGATGACCAACGTCCAGCGTCTGGCTGAGCCATCCCAAATGCTCAAGACGGCCATTGTCCACCTGATCAACTATCAAGATGATGCTGAGCTGGCCACACGTGCTATTCCAGAGCTCACGAAATTACTGAATGATGAAGACCAGGTGGTGGTCAGTAAGGCTGCACAGATCGTCAA-CCAGCTCACACGCAAAGATGCATCGCGGCGTGCGCTCATGCAGTCCCCTCAGATGGTGGCGGCAGTGGTGCGAGCGATGCAAAACACGAGTGACATGGAGACGGCCCGAGCCACGGGCAGCATTCTTCACAACCTGTCCCATCAGAGGGAGGGGCTGCTCTCCCTTCTTCAGTCTGGAGGGATCCCTGCTTTGATTCGCATGCTCAGCTCTCCCATGGATTCT]
[+] EMBL CA588505 [AAATAAGTCGGAACCGAGTAGCGGGTCCGAGAAGCCTTAAGGAGGCCTGGGATCGACTGAAGCTTTCCGAGTGTTTTCACAGATTTTTCCATCACTGTGATAGAGGCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGGGTGGCTAAGGTGGCCGAATGGCAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGCCACCACAGTCAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGTCACGAGGGAAGAACCTGACTATGAGATCACGACAAGATCCCACCGGG TGCGAGCTGCGATGTTCCCAGAGAC ACTGGAGTCGGGTTCCACCATGTTGTTGACTCCAAAAGACCCAGCTGAGATGACCAACGTCCAGCGTCTGGCTGAGCCATCCCAAATGCTCAAGACGGCCATTGTCCACCTGATCAACTATCAAGATGATGCTGAGCTGGCCACACGTGCTATTCCAGAGCTCACGAAATTACTGAATGATGAAGACCAGGTGGTGATCAGTAAGGCTGCACAGATCGTCAA CCAGCTCACACGCAAAGATGCATCGCGGCGTGCGCTCATGCAGTCCCCTCAGATGGTGGCGGCAGTGGTGCGAGCGATGCAAAACACGAGTGACATGGAGACGGCCCGAGCCACGGGCAGCATTCTTCACAACCTGTCCCATCAGAGGGAGGGGCTGCTCTCCCTTCTTCAGTCTGGAGGGATCCCTGCTTTGATTCGCATGCTCAGCTCTCCCATGGATTCT]
[+] EMBL FR0058149 [ GTCGGAACCGAGTAGCGGGTCCGAGAAGAACCACCGCGGCCTGGGATCGACTGAAGCTTTCCGAGTGTTTTCACAGATTTTTCCATCACTGTGATAGAGGCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGAGTGGCTAAGGTGGCCGAATGGCAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGAGCCACCACAGTCAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGTCACGAGGGAAGAACCTGACTATGAGATCACGACAAGATCCCACCGCC TGCGAGCTGCGATGTTCCCAGAGAC ACCGGAGTCTGAGTCCACCATGTTGTTGACTCCAAAAG ]
[+] EMBL FR0058852 [ CGAGTAGCGGGTCCGAGAAGAACCACCGTGTGCTGGGATCGACTGAAGCTTTCCGAGTGTTTTCACAGATTTTTCCATCACTGTGATAGAGGCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGGGTGGCTAAGGTGGCCGAATGGCAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGCCACCACAGTCAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGTCACGAGGGAAGAACCTGACTATGAGATCACGACAAGATCCCACCGGG ]
[+] EMBL CA591050 [ GAGTAGCGGGTCCGAGAAGAACCACCGCGGCCTGGGATCGACTGAAGCTTTCCGAGTGTTTTCACAGATTTTTCCATCACTGTGATAGAGGCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGGGTGGCTAAGGTGGCCGAATGGCAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGCCACCACAGTCAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGTCACGAGGGAAGAACCTGACTATGAGATCACGACAAGATCCCACCGGG TGCGAGCTGCGATGTTCCCAGAGAC ACTGGAGTCGGGTTCCACCATGTTGTTGACTCCAAAAGACCCAGCTGAGATGACCAACGTCCAGCGTCTGGCTGAGCCATCCCAAATGCTCAAGACGGCCATTGTCCACCTGATCAACTATCAAGATGATGCTGAGCTGGCCACACGTGCTATTCCAGAGCTCACGAAATTACTGAATGATGAAGACCAGGTGGTGGTCAGTAAGGCTGCACAGATCGTCAA CCAGCTCACACGCAAAGATGCATCGCGGCGTGCGCTCATGCAGTCCCCTCAG ]
[+] EMBL BU807309 [ GAGTAGCGGGTCCGAGAAGAACCACCGCGGCCTGGGTTCGACTGAAGCTTTCCGAGTGTTTTCACAGATTTTTCCATCACTGTGATAGAGGCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGGGTGGCTAAGGTGGCCGAATGGCAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGCCACCACAGTCAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGTCACGAGGGAAGAACCTGACTATGAGATCACGACAAGATCCCACCGGG TGCGAGCTGCGATGTTCCCAGAGAC ACTGGAGTCGGGTTCCACCATGTTGTTGACTCCAAAAGACCCAGCTGAGATGACCAACGTCCAGCGTCTGGCTGAGCCATCCCAAATGCTCAAGACGGCCATTGTCCACCTGATCAACTATCAAGATGATGCTGAGCTGGCCACACGTGCTATTCCAGAGCTCACGTAATTACTGAATGATGAAGACCAGGTGGTGGTCAGTAAGGCTGCACAGATCGTCAA CCAGCTCACACGCAAAGATGCATCGCGGCGTGCGCTCATGCAGTCCC ]
[+] EMBL FR0058730 [ CGCGTCCGAGAAGAACCACCGCGGCCTGTTATCGACTGAAGCTTTCCGAGTGTTTTGAGAGATTTTTCCATCACTGTGATAGAGGCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGGGTGGCTAAGGTGGCCGAATGGCAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGCCACCACAGTCAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGTCACGAGGGAAGAACCTTACTATGAGATCACGACAAGATCCCACCGTG TGCGAGCTGCGATGTTCCCAGAGAC ACTGGAGTC GGTTCCACCATG ]
[+] EMBL FR0058724 [ CCGTTCCGAGAAGAACCACCGTGTCCTGTTATCGACTGAAGCTTTCCGAGGGTGGGGACAGATTTTTCCATCACTGTGATAGAGGCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGTGGTGGTTAAGGTGGCCGAATGTCACCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGCCACCACAGTCAGAGACGACGATGGAGAGTCCACCATCTCTAAGCACTACACCATGACCACCACGGTCACGAGGGAAGAACCTGACTATTAGATCACGACAAGATCCCACCGGGTTGCGAGCTGCGATGTTCCCAGAGAC ACTGGAGTCGGGTTCCACCAT ]
[+] EMBL FR0061851 [ TGAAGCTTTCCGAGTGTTTTCACAGGGGGTTCCATCACTGTGATAGAGGCAACGATGGCAATGCAGATGGTTGAACGTGACGCCGTNGTGGCTAAGGTGGCCGAATGGGAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGTCACCACAGTCAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGTCACGAGGGAAGAACCTGACTATGAGATCACGACAAGATCCCACCGGG TGCGAGCTGCGATGTTCCCAGAGACAACTGG ]
[+] EMBL CA591144 [ AGGTGGCCGAATGGCAGCACGCGATGCATGGGCTCGACTCCGGCATCAGTTCTGGGGTCACCACAGACAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGTCACTAGGGAAGAACCTGACTATGAGATCACGACAAGATCCCACCGGG TGCGAGATGCGATGTTCCCAGAGAC ACTGGAGTCGGGTTCCACCATGTTGTTGACTCCAAAAGACCCAGCTGAGATGACCAACGTCCAGCGTCTGGCTGAGCCATCCCAAATGCTCAAGACGGCCATTGTCCACCTGATCAACTATCCAGATGATGCTGAGCTGGCCACACGTGCTATTCCAGAGCTCGCGAAATTACTGAATGATGAAGACC GGTGGTGGTCAGTAAGGCTGCCCAGATCGTCAACCCTTCTCACACGCAAA ]
consensusID : consensus_2656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[TTTGTCCGGGCGACCGCGGACTCCAGCAGCTGTGGGGAGAAATAAGTCGGAACCGAGTAGCGGGTCCGAGAAGAACCACCGCGGCCTGGGATCGACTGAAGCTTTCCGAGTGTTTTCACAGGTAAAATTCGGATTCATCGAGCTCATTGTTTTTGTCGGCGACGTCTTTGTTGTTTTCCTGTTTTTGAGCATTTACGAACTCCGAATGTCACCGAATATTTTTCCATCACTGTGATATAGGCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGGGTGGCTAAGGTGGCCGAATGGCAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGACACCACAGTCAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGGCACGAGGGAAGAACCTGACTATGAGATCACGACAAGATCCCACCGGGTGCGAGCTGCGATGTTCCCAGAGACACTGGAGTCGGGTTCCACCATGTTGTTGACTCCAAAAGACCCAGCTGAGATGACCAACGTCCAGCGTCTGGCTGAGCCATCCCAAATGCTCAAGACGGCCATTGTCCACCTGATC]
[+] EMBL BU807151 [TTTGTCCGGGCGACCGCGGACTCCAGCAGCTGTGGGGAGAAATAAGTCGGAACCGAGTAGCGGGTCCGAGAAGAACCACCGCGGCCTGGGATCGACTGAAGCTTTCCGAGTGTTTTCACAGGTAAAATTCGGATTCATCGAGCTCATTGTTTTTGTCGGCGACGTCTTTGTTGTTTTCCTGTTTTTGAGCATTTACGAACTCCGAATGTCACCGAATATTTTTCCATCACTGTGATATAGGCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGGGTGGCTAAGGTGGCCGAATGGCAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGACACCACAGTCAGAGACGACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGGCACGAGGGAAGAACCTGACTATGAGATCACGACAAGATCCCACCGGGTGCGAGCTGCGATGTTCCCAGAGACACTGGAGTCGGGTTCCACCATGTTGTTGACTCCAAAAGACCCAGCTGAGATGACCAACGTCCAGCGTCTGGCTGAGCCATCCCAAATGCTCAAGACGGCCATTGTCCACCTGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2656#0 ---------------------------------------AAATAAGTCGGAACCGAGTAG 21
consensus_2656#1 TTTGTCCGGGCGACCGCGGACTCCAGCAGCTGTGGGGAGAAATAAGTCGGAACCGAGTAG 60
*********************
consensus_2656#0 CGGGTCCGAGAAGAACCACCGCGGCCTGGGATCGACTGAAGCTTTCCGAGTGTTTTCACA 81
consensus_2656#1 CGGGTCCGAGAAGAACCACCGCGGCCTGGGATCGACTGAAGCTTTCCGAGTGTTTTCACA 120
************************************************************
consensus_2656#0 G----------------------------------------------------------- 82
consensus_2656#1 GGTAAAATTCGGATTCATCGAGCTCATTGTTTTTGTCGGCGACGTCTTTGTTGTTTTCCT 180
*
consensus_2656#0 -------------------------------------ATTTTTCCATCACTGTGATAGAG 105
consensus_2656#1 GTTTTTGAGCATTTACGAACTCCGAATGTCACCGAATATTTTTCCATCACTGTGATATAG 240
******************** **
consensus_2656#0 GCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGGGTGGCTAAGGTGGCCGAATGG 165
consensus_2656#1 GCAACGATGGCAATGCAGATGGGTGAACGTGACGCCGGGGTGGCTAAGGTGGCCGAATGG 300
************************************************************
consensus_2656#0 CAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGCCACCACAGTCAGAGAC 225
consensus_2656#1 CAGCACACGATGTATGGCCTCGACTCCGGCATCAATTCTGGGGACACCACAGTCAGAGAC 360
******************************************* ****************
consensus_2656#0 GACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGTCACGAGGGAA 285
consensus_2656#1 GACGATGGAGAGTACACCACCTCTAAGCACTACACCATGACCACCACGGGCACGAGGGAA 420
************************************************* **********
consensus_2656#0 GAACCTGACTATGAGATCACGACAAGATCCCACCGGGTGCGAGCTGCGATGTTCCCAGAG 345
consensus_2656#1 GAACCTGACTATGAGATCACGACAAGATCCCACCGGGTGCGAGCTGCGATGTTCCCAGAG 480
************************************************************
consensus_2656#0 ACACTGGAGTCGGGTTCCACCATGTTGTTGACTCCAAAAGACCCAGCTGAGATGACCAAC 405
consensus_2656#1 ACACTGGAGTCGGGTTCCACCATGTTGTTGACTCCAAAAGACCCAGCTGAGATGACCAAC 540
************************************************************
consensus_2656#0 GTCCAGCGTCTGGCTGAGCCATCCCAAATGCTCAAGACGGCCATTGTCCACCTGATCAAC 465
consensus_2656#1 GTCCAGCGTCTGGCTGAGCCATCCCAAATGCTCAAGACGGCCATTGTCCACCTGATC--- 597
*********************************************************
consensus_2656#0 TATCAAGATGATGCTGAGCTGGCCACACGTGCTATTCCAGAGCTCACGAAATTACTGAAT 525
consensus_2656#1 ------------------------------------------------------------
consensus_2656#0 GATGAAGACCAGGTGGTGGTCAGTAAGGCTGCACAGATCGTCAACCAGCTCACACGCAAA 585
consensus_2656#1 ------------------------------------------------------------
consensus_2656#0 GATGCATCGCGGCGTGCGCTCATGCAGTCCCCTCAGATGGTGGCGGCAGTGGTGCGAGCG 645
consensus_2656#1 ------------------------------------------------------------
consensus_2656#0 ATGCAAAACACGAGTGACATGGAGACGGCCCGAGCCACGGGCAGCATTCTTCACAACCTG 705
consensus_2656#1 ------------------------------------------------------------
consensus_2656#0 TCCCATCAGAGGGAGGGGCTGCTCTCCCTTCTTCAGTCTGGAGGGATCCCTGCTTTGATT 765
consensus_2656#1 ------------------------------------------------------------
consensus_2656#0 CGCATGCTCAGCTCTCCCATGGATTCT 792
consensus_2656#1 ---------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |