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Takifugu rubripes
cluster # 2657 cluster # 2657       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2657#0 length = 652 sequences # 9  
consensus_2657#1 length = 595 sequences # 1  

consensusID : consensus_2657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 652
fasta sequence
                              [CCCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGTGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAGAAGCTGGCCAGTGCGTTCACCGAGGAGGTGGCAGTTCTGTACCGC]

[+] EMBL CA590460             [CCCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCAAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGTGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAGAAGCTGGCC                                    ]
[+] EMBL BU804905             [           GCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGGTGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGTGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAGAAGCTGGCCAGT                                 ]
[+] EMBL CA590135             [                      CCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAATCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACATGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGTGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAGAAGCTGGCCAGTGCGTTCACCGAGGAGGTGGCAGTTCTGTACCGC]
[+] EMBL CA590287             [                      CCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACCAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGTGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAGAAGCTGGCCAGTGCGTTCACCGAGGAGGTGGCAGTTCTG      ]
[+] EMBL CA332969             [                        GCTCAGCTGCTAGCATCAAGACATGGCCACGGACAATCTTAACCCAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACTTGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGCGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAAAAG                                          ]
[+] EMBL FR0063460            [                                              ATGGCCACGGACAAGCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCC                                                                                                                                                                                                                                                  ]
[+] EMBL CA332742             [                                                                       TTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTC TCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCCTTAAGATGGGCAACCGACACTTGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTG                                                                                                                                                                        ]
[+] EMBL FR0063821            [                                                                                        GGGGGGAAGAAAGAAAATTCATCCGATGNAGGACTAGCATTGGAAATTTTGCAAATCAT AAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCTGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGGATGGTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGGCAACACGGAGCCACGCAAGCGCTCCCATCTGCTGGCACGACTCCGCAAGc                                                                                                                                                                                                                          ]
[+] EMBL BU807565             [                                                                                                        ATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGACTCCGACACGGGGACTACCAGAGGGACAGGGGATACTGCTCTCACCGACTGCGACGCCTACAGAAGACCCTCGGCTTTAAAATGGGAAACCGACATTAG                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_2657#0 CCCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAA GCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGG ACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACA CGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGAC CCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGAT GCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTA CGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTC ACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCG TGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGT GGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCAT CTATGAGAAGCTGGCCAGTGCGTTCACCGAGGAGGTGGCAGTTCTGTACCGC



consensusID : consensus_2657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence
                              [GCATGCACCTTCACTTCTGCAACATTTGTGGGTTAAACATCCAGGCTGCTGTGGTGTTTGCACACGTGCACTGTCCAACAGCAACATCATCTACAGGCAACATCATCCAGGCCTCAGGTGGGGCGTCAACATCTGCATTAGCATGAAGAAGCAGCAGTGTTTGCTGGGCCTCCCCTCTAGAAAGGTGTCTAATAAACTGTTGGACCGGGTTTAGATTGTTCCCCACAGCTGATCACAGGCTGCAGCTCTGCTCAGGAATATTCAGTGGCTCCTCTTTAGCTGCTAAATCTCCGTCTGGATAAATTAAAACACCTTAAACGCGTGGTTCGGTTCGGTTCGGTTCGGTGTATTTGCTTCTTTTGCCGGGTCCATTTTTCCACTCTTGGATCCACTTCATGTTTCAACCACAGCGGCGACATTGAAGGAATCGTCGCTTGACAAGAAGACGAAGAAGAATCCTAATCTCGCGAGACCGAGACGTGATTTCGGTGCTCCCCGGTCATTGGATCACGAGCCCCCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTT]

[+] EMBL BU807506             [GCATGCACCTTCACTTCTGCAACATTTGTGGGTTAAACATCCAGGCTGCTGTGGTGTTTGCACACGTGCACTGTCCAACAGCAACATCATCTACAGGCAACATCATCCAGGCCTCAGGTGGGGCGTCAACATCTGCATTAGCATGAAGAAGCAGCAGTGTTTGCTGGGCCTCCCCTCTAGAAAGGTGTCTAATAAACTGTTGGACCGGGTTTAGATTGTTCCCCACAGCTGATCACAGGCTGCAGCTCTGCTCAGGAATATTCAGTGGCTCCTCTTTAGCTGCTAAATCTCCGTCTGGATAAATTAAAACACCTTAAACGCGTGGTTCGGTTCGGTTCGGTTCGGTGTATTTGCTTCTTTTGCCGGGTCCATTTTTCCACTCTTGGATCCACTTCATGTTTCAACCACAGCGGCGACATTGAAGGAATCGTCGCTTGACAAGAAGACGAAGAAGAATCCTAATCTCGCGAGACCGAGACGTGATTTCGGTGCTCCCCGGTCATTGGATCACGAGCCCCCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTT]


>consensus_2657#1 GCATGCACCTTCACTTCTGCAACATTTGTGGGTTAAACATCCAGGCTGCTGTGGTGTTTG CACACGTGCACTGTCCAACAGCAACATCATCTACAGGCAACATCATCCAGGCCTCAGGTG GGGCGTCAACATCTGCATTAGCATGAAGAAGCAGCAGTGTTTGCTGGGCCTCCCCTCTAG AAAGGTGTCTAATAAACTGTTGGACCGGGTTTAGATTGTTCCCCACAGCTGATCACAGGC TGCAGCTCTGCTCAGGAATATTCAGTGGCTCCTCTTTAGCTGCTAAATCTCCGTCTGGAT AAATTAAAACACCTTAAACGCGTGGTTCGGTTCGGTTCGGTTCGGTGTATTTGCTTCTTT TGCCGGGTCCATTTTTCCACTCTTGGATCCACTTCATGTTTCAACCACAGCGGCGACATT GAAGGAATCGTCGCTTGACAAGAAGACGAAGAAGAATCCTAATCTCGCGAGACCGAGACG TGATTTCGGTGCTCCCCGGTCATTGGATCACGAGCCCCCCTCATCGAGCATGTCCGGTCC GCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2657#0      ------CCCCTCA-TCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCA 53
consensus_2657#1      GCATGCACCTTCACTTCTGCAACATTTGTGGGTTAAACATCCAGGCTGCTGTGGTGTTTG 60
                             ** *** *   ***      **  * * * *  * **  *   *   **    

consensus_2657#0      CGGACAAGCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCG 113
consensus_2657#1      CACACGTGCACTGTCCAACAGCAACATCATCTACAGGCAACATCATCCAGGCCTCA---G 117
                      *  **  ***      *     *   **  *    **  * *  *   *    ***   *

consensus_2657#0      ATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCC 173
consensus_2657#1      GTGGGGCGTCAACATCTGCATT-------AGCATGAAGAAGCAGCAGTGTTTGCTGGGCC 170
                       *** *    *  **  * * *       * *** *** **  ****     **  ****

consensus_2657#0      TCCGACACGGGGAC-TACCAGAGGTACAGGGGCTACTGCTCTCGCCG--CCTGCGCCGCC 230
consensus_2657#1      TCCCCTCTAGAAAGGTGTCTAATAAACTGTTGGACCGGGTTTAGATTGTTCCCCACAGCT 230
                      ***      *  *  *  *  *   ** *  *   * * * * *      *  * * ** 

consensus_2657#0      TACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAA 290
consensus_2657#1      GATCACAGGCTGCAGCTCTGCTCAGGAATATTCAGTGGCTCCTCTTTAGCTGCTAAATCT 290
                       *    ** *    *   *    * *   *  *         ** *  *     * **  

consensus_2657#0      CCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTG 350
consensus_2657#1      CCGTCTGGATAAATTAAAACACCTTAAACGCGTGGTTCGGTTCGGTTC-GGTTCGGTGTA 349
                      *** *  ***    *   *** *    **  ** * * * *    *   **    * ** 

consensus_2657#0      CTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCC 410
consensus_2657#1      TTT---GCTTCTTTTGCCGGGTCCATTTTTCCACT--CTTGGATCCACTTCATG--TTTC 402
                       **   *** *      * * ** *        *   *  *** ****   *    ** *

consensus_2657#0      ATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCG 470
consensus_2657#1      AACCACAGCGGCGACATTG-AAGGAATCGTCGCTTGACAAGAAGACGAAGAAGAATCCTA 461
                      * *  * *   ****   * ****   *   **    * *****  * *****       

consensus_2657#0      AGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGA 530
consensus_2657#1      A----TCTCGCGAGACCGAGACGTGATTTCGGTGCTCCCCGGTCATTGGATCACGAGCCC 517
                      *     **** * *  **  * *      * *    * * **    *  * **       

consensus_2657#0      CTGGGATGGTGGA-GTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAG 589
consensus_2657#1      CCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAA- 576
                      *    ** * * * **  *    **     **  * *          ****    **** 

consensus_2657#0      TGCAAAACCATCTATGAGAAGCTGGCCAGTGCGTTCACCGAGGAGGTGGCAGTTCTGTAC 649
consensus_2657#1      -GCAAAACGAAGTTAAAGTT---------------------------------------- 595
                       ******* *  *   **                                          

consensus_2657#0      CGC 652
consensus_2657#1      ---
                         




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)