These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 652 fasta sequence [CCCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGTGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAGAAGCTGGCCAGTGCGTTCACCGAGGAGGTGGCAGTTCTGTACCGC] [+] EMBL CA590460 [CCCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCAAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGTGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAGAAGCTGGCC ] [+] EMBL BU804905 [ GCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGGTGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGTGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAGAAGCTGGCCAGT ] [+] EMBL CA590135 [ CCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAATCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACATGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGTGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAGAAGCTGGCCAGTGCGTTCACCGAGGAGGTGGCAGTTCTGTACCGC] [+] EMBL CA590287 [ CCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACCAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGTGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAGAAGCTGGCCAGTGCGTTCACCGAGGAGGTGGCAGTTCTG ] [+] EMBL CA332969 [ GCTCAGCTGCTAGCATCAAGACATGGCCACGGACAATCTTAACCCAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACTTGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGACTGGGATGGCGGAGTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAGTGCAAAACCATCTATGAAAAG ] [+] EMBL FR0063460 [ ATGGCCACGGACAAGCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCC ] [+] EMBL CA332742 [ TTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTC TCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCGGCCTTAAGATGGGCAACCGACACTTGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCCATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCGAGAGCCCTCGTGTG ] [+] EMBL FR0063821 [ GGGGGGAAGAAAGAAAATTCATCCGATGNAGGACTAGCATTGGAAATTTTGCAAATCAT AAGGAGTCGCAGCAGCAGCACGGCCTCCGACACGGGGACTACCAGAGGTACAGGGGCTACTGCTCTCGCCGCCTGCGCCGCCTACGGAAGACCCTCTGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAACCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGGATGGTCTAATGGAGGCGGAGCGTGCTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGGCAACACGGAGCCACGCAAGCGCTCCCATCTGCTGGCACGACTCCGCAAGc ] [+] EMBL BU807565 [ ATTCATCCGATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGACTCCGACACGGGGACTACCAGAGGGACAGGGGATACTGCTCTCACCGACTGCGACGCCTACAGAAGACCCTCGGCTTTAAAATGGGAAACCGACATTAG ] consensusID : consensus_2657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [GCATGCACCTTCACTTCTGCAACATTTGTGGGTTAAACATCCAGGCTGCTGTGGTGTTTGCACACGTGCACTGTCCAACAGCAACATCATCTACAGGCAACATCATCCAGGCCTCAGGTGGGGCGTCAACATCTGCATTAGCATGAAGAAGCAGCAGTGTTTGCTGGGCCTCCCCTCTAGAAAGGTGTCTAATAAACTGTTGGACCGGGTTTAGATTGTTCCCCACAGCTGATCACAGGCTGCAGCTCTGCTCAGGAATATTCAGTGGCTCCTCTTTAGCTGCTAAATCTCCGTCTGGATAAATTAAAACACCTTAAACGCGTGGTTCGGTTCGGTTCGGTTCGGTGTATTTGCTTCTTTTGCCGGGTCCATTTTTCCACTCTTGGATCCACTTCATGTTTCAACCACAGCGGCGACATTGAAGGAATCGTCGCTTGACAAGAAGACGAAGAAGAATCCTAATCTCGCGAGACCGAGACGTGATTTCGGTGCTCCCCGGTCATTGGATCACGAGCCCCCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTT] [+] EMBL BU807506 [GCATGCACCTTCACTTCTGCAACATTTGTGGGTTAAACATCCAGGCTGCTGTGGTGTTTGCACACGTGCACTGTCCAACAGCAACATCATCTACAGGCAACATCATCCAGGCCTCAGGTGGGGCGTCAACATCTGCATTAGCATGAAGAAGCAGCAGTGTTTGCTGGGCCTCCCCTCTAGAAAGGTGTCTAATAAACTGTTGGACCGGGTTTAGATTGTTCCCCACAGCTGATCACAGGCTGCAGCTCTGCTCAGGAATATTCAGTGGCTCCTCTTTAGCTGCTAAATCTCCGTCTGGATAAATTAAAACACCTTAAACGCGTGGTTCGGTTCGGTTCGGTTCGGTGTATTTGCTTCTTTTGCCGGGTCCATTTTTCCACTCTTGGATCCACTTCATGTTTCAACCACAGCGGCGACATTGAAGGAATCGTCGCTTGACAAGAAGACGAAGAAGAATCCTAATCTCGCGAGACCGAGACGTGATTTCGGTGCTCCCCGGTCATTGGATCACGAGCCCCCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAAGCAAAACGAAGTTAAAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2657#0 ------CCCCTCA-TCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCA 53 consensus_2657#1 GCATGCACCTTCACTTCTGCAACATTTGTGGGTTAAACATCCAGGCTGCTGTGGTGTTTG 60 ** *** * *** ** * * * * * ** * * ** consensus_2657#0 CGGACAAGCAAAACGAAGTTAAAGTTTCTCCATTGGGGGAAAAGAAAGAAAATTCATCCG 113 consensus_2657#1 CACACGTGCACTGTCCAACAGCAACATCATCTACAGGCAACATCATCCAGGCCTCA---G 117 * ** *** * * ** * ** * * * * *** * consensus_2657#0 ATGGAGGACTAGGATTGGAAATTTTGCAAATCATCAAGGAGTCGCAGCAGCAGCACGGCC 173 consensus_2657#1 GTGGGGCGTCAACATCTGCATT-------AGCATGAAGAAGCAGCAGTGTTTGCTGGGCC 170 *** * * ** * * * * *** *** ** **** ** **** consensus_2657#0 TCCGACACGGGGAC-TACCAGAGGTACAGGGGCTACTGCTCTCGCCG--CCTGCGCCGCC 230 consensus_2657#1 TCCCCTCTAGAAAGGTGTCTAATAAACTGTTGGACCGGGTTTAGATTGTTCCCCACAGCT 230 *** * * * * * ** * * * * * * * * * * ** consensus_2657#0 TACGGAAGACCCTCGGCTTTAAGATGGGCAACCGACACAAGTTCATCGGGAAAAAGATAA 290 consensus_2657#1 GATCACAGGCTGCAGCTCTGCTCAGGAATATTCAGTGGCTCCTCTTTAGCTGCTAAATCT 290 * ** * * * * * * * ** * * * ** consensus_2657#0 CCGCCGAGATGCTGTCGGACAGCAGGTACTTGTTGATGGTTCTAATGGAGGCGGAGCGTG 350 consensus_2657#1 CCGTCTGGATAAATTAAAACACCTTAAACGCGTGGTTCGGTTCGGTTC-GGTTCGGTGTA 349 *** * *** * *** * ** ** * * * * * ** * ** consensus_2657#0 CTTGGAGCTACGCCATGCAGCTCAAGCAGGAGGCCAACACGGAGCCACGCAAGCGCTTCC 410 consensus_2657#1 TTT---GCTTCTTTTGCCGGGTCCATTTTTCCACT--CTTGGATCCACTTCATG--TTTC 402 ** *** * * * ** * * * *** **** * ** * consensus_2657#0 ATCTGCTGTCACGACTCCGCAAGGCTGCCAAGCACAGCGAGAAGCTGGAGAAGCTCTGCG 470 consensus_2657#1 AACCACAGCGGCGACATTG-AAGGAATCGTCGCTTGACAAGAAGACGAAGAAGAATCCTA 461 * * * * **** * **** * ** * ***** * ***** consensus_2657#0 AGAGCCCTCGTGTGGACGCCAAGACCAAACTGGAGGCACAGGCGTATACAGCATATTTGA 530 consensus_2657#1 A----TCTCGCGAGACCGAGACGTGATTTCGGTGCTCCCCGGTCATTGGATCACGAGCCC 517 * **** * * ** * * * * * * ** * * ** consensus_2657#0 CTGGGATGGTGGA-GTTTGAATTGCAGGAGTGGAAACGAGCGATGGAGGCCTTCAACAAG 589 consensus_2657#1 CCCTCATCGAGCATGTCCGGTCCGCTCAGCTGCTAGCATCAAGACATGGCCACGGACAA- 576 * ** * * * ** * ** ** * * **** **** consensus_2657#0 TGCAAAACCATCTATGAGAAGCTGGCCAGTGCGTTCACCGAGGAGGTGGCAGTTCTGTAC 649 consensus_2657#1 -GCAAAACGAAGTTAAAGTT---------------------------------------- 595 ******* * * ** consensus_2657#0 CGC 652 consensus_2657#1 --- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |