These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 753 fasta sequence [TTTTTTTTTTTTGATGTTGGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTCGTGATTACAGCTCCAACGTGGGGAGAAATAGCACCGAATGACTGTGG] [+] EMBL CA845353 [TTTTTTTTTTTTGATGTTGGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACAC ] [+] EMBL CA845189 [ TTTTTGATGTTGGAATGACTTTTATTGGACAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGT ] [-] EMBL CA845672 [ AATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTCGTGATTAAGGCTCCAACGTGG ] [-] EMBL CA591363 [ GGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTCGTGATTACAGCTCCAACGTGGGGAGAAATAGCACCGAATGACTGTGG] [-] EMBL FR0055731 [ CCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTCGTGATTACAGCACCAACGT ] [-] EMBL FR0055315 [ CAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAANCCACAGGGAGATCTCCTTTTTGGCACTTCCTACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCATCCATGATTCGTGATTACAGCTCCAACGTGGTGAGA ] [-] EMBL FR0055441 [ CAGCTCGCCTTCCTGAAACCCCAGGGAGATCTCCTTTTTGGCACTTACCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTACCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCATCCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTATGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCATCCATGATTCGTGATAAC ] [-] EMBL FR0057670 [ TCCAGGCTTAGACTCTGCAGGTTTGGTTCCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAACCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGAAAGAATGGTCTTTCCTTCAGGTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACCGTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTC ] consensusID : consensus_2669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 542 fasta sequence [GGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCTAAACACACGGACACAGTTCAAGCGAACATCCCAAAGTCAAGACAAGTGTCACAGTCGAATACTGGCAGATGTGGGACATATTAGGCAG] [+] EMBL CA329470 [GGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGGTTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCTAAACACACGGACACAGTTCAAGCGAACATCCCAAAGTCAAGACAAGTGTCACAGTCGAATACTGGCAGATGTGGGACATATTAGGCAG] [-] EMBL FR0055898 [ TTTATTGGAAAGCAGATCAATTTAAAACAATTTCAAAAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACAGGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAGAAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTGTGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAAACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCCTGTTGACATCAATGCAGAAGT ] consensusID : consensus_2669#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [GGCCATTTTCTCTGTTCATGCAGATTCATGTTCAACATTTTTTATAAAAGAATGAATCCAGTATGATCGTGTTGCCTTAGATGTTACATCAGGAGGCAGTTTGCCTAATCAGCCAGGCAACAGTCAGGAATAGACAAGTGGACTAATCAGCTCAGAGCTTTAACTTCTACCAGAGGCTCAAAGATGTACCGAGGGAAGTGTTATGAAAGAAAATGACAAAAGATCACACAAAGTCCACGTTTTAAAGTTTGCACACCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAGCGATGCCTCTCTGCACACCGTCAGGCTTGCCGGCAATGAAGGTACGCTCAT] [-] EMBL FR0060096 [GGCCATTTTCTCTGTTCATGCAGATTCATGTTCAACATTTTTTATAAAAGAATGAATCCAGTATGATCGTGTTGCCTTAGATGTTACATCAGGAGGCAGTTTGCCTAATCAGCCAGGCAACAGTCAGGAATAGACAAGTGGACTAATCAGCTCAGAGCTTTAACTTCTACCAGAGGCTCAAAGATGTACCGAGGGAAGTGTTATGAAAGAAAATGACAAAAGATCACACAAAGTCCACGTTTTAAAGTTTGCACACCTGAAGCATCTTCATGCCCACAAGTTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAGCGATGCCTCTCTGCACACCGTCAGGCTTGCCGGCAATGAAGGTACGCTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2669#0 TTTTTTTTTTTTGATGTTGGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTT 60 consensus_2669#1 ------------------GGAATGACTTTTATTGGAAAGCAGATCAATTTAAAACAATTT 42 consensus_2669#2 -------------------GGCCATTTTCTCTGTTCATGCAGATTCATGTTCAACATTTT 41 * ** * * * ****** ** * **** *** consensus_2669#0 CAA--AAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACA 118 consensus_2669#1 CAA--AAGGAATGGTTCTAATGGAATTAATCTGATCCAAATACAGTATCGCAATGGGACA 100 consensus_2669#2 TTATAAAAGAATGAATCCAGTATGATCGTGTTGCCTTAGATGTTACATC----------A 91 * ** ***** ** * * ** ** * ** *** * consensus_2669#0 GGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAG 178 consensus_2669#1 GGAGGGAATGTCACATCGGAATGGAATGACAAATGTCTTATGCTACAGGCAAGACGGGAG 160 consensus_2669#2 GGAGGCAGTTT---GCCTAATCAGCCAGGCAACAGTC---AGGAATAGACAAG-TGGACT 144 ***** * * * * * * * *** *** * * ** **** ** consensus_2669#0 AAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTG 238 consensus_2669#1 AAGTGAGGCAAAGCTGTCAGTGGTTTGCAGACAGTGGAAGCACTGCAGCAGGAGCCAGTG 220 consensus_2669#2 AATCAGCTCAGAGCT-TTAACTTCTACCAGAGGCTCAAAGATGTACCGAGGGAAGTGTTA 203 ** ** **** * * * **** * *** * * * *** * consensus_2669#0 TGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAA 298 consensus_2669#1 TGGTCTAGTAGAGCCAGTCAAAGGCACAGCTCTTGTAGCTGACCAGCTCGCCTTCCTGAA 280 consensus_2669#2 TGAAAGAA-AATGACAAAAGATCACACAAAGTCCACGTTTTAA-AGTTTGCACACCTGAA 261 ** * * * ** * **** * * ** * ** ****** consensus_2669#0 ACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCC 358 consensus_2669#1 ACCACAGGGAGATCTCCTTTTTGGCACTTTCCACAGAGTCACTGCCGTGGATGATGTTCC 340 consensus_2669#2 GCATCTTCATGCCCACAAGTTTGAAGCCTTTCATC---TCGAATCTTTTGAGGATCTCTC 318 * * * * * **** * ** ** ** * * ** *** * * consensus_2669#0 TGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGG 418 consensus_2669#1 TGTTGACATCAATGCAGAAGTCTCCTCTGATGGTTCCAGGCTTAGACTCTGCAGGGTTGG 400 consensus_2669#2 CAGCGATGCC----------TCTCTGCACACCGT--CAGGCTTGCCGGCAATGAAGGTAC 366 ** * **** * * ** ******* * * * consensus_2669#0 TTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCATAGCAA 478 consensus_2669#1 TTTCACCCAGCATAACCCTGCCAGTCTTCACCACACCTTTGCCTTCCCACACCTAAACA- 459 consensus_2669#2 GCTCAT------------------------------------------------------ 372 *** consensus_2669#0 CCACAGGACCGGAGCTCATGTACTTGATAAGGGAAGGA-AAGAATGGTCTTTCCTT-CAG 536 consensus_2669#1 -CACGGACACAGTTCAAGCGAACATCCCAAAGTCAAGACAAGTGTCACAGTCGAATACTG 518 consensus_2669#2 ------------------------------------------------------------ consensus_2669#0 GTCAATGTAGTGCTTCATCAGCAGGTCTTCACTGGCCTGAAGCATCTTCATGCCCACAAG 596 consensus_2669#1 GCAGATGTGGGACATATTAGGCAG------------------------------------ 542 consensus_2669#2 ------------------------------------------------------------ consensus_2669#0 TTTGAAGCCTTTCATCTCGAATCTTTTGAGGATCTCTCCAACGATGCCTCTCTGCACACC 656 consensus_2669#1 ------------------------------------------------------------ consensus_2669#2 ------------------------------------------------------------ consensus_2669#0 GTCAGGCTTGACGGCAATGAAGGTACGCTCATCCAAGTCAGCCATGATTCGTGATTACAG 716 consensus_2669#1 ------------------------------------------------------------ consensus_2669#2 ------------------------------------------------------------ consensus_2669#0 CTCCAACGTGGGGAGAAATAGCACCGAATGACTGTGG 753 consensus_2669#1 ------------------------------------- consensus_2669#2 ------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |