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Takifugu rubripes
cluster # 2672 cluster # 2672       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2672#0 length = 642 sequences # 10  
consensus_2672#1 length = 211 sequences # 1  

consensusID : consensus_2672#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 642
fasta sequence
                              [TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG-GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC-TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA-GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTTATGCCAAGGCACTGATTCATAACGCCGTGTCCAATATCATCTGC]

[+] EMBL CA591087             [TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAAGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTTATGCCAAAGCACCGATTCATAACGCCGTGTCCAATATCATCTGC]
[+] EMBL CA589631             [TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTTATGCCAAGGCACTGATTCATAACGCCGTG               ]
[+] EMBL CA590772             [        GTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGNGAGCCTTTTTATGCCAAGGCACTGATTCATAACGCCGTGTCCCATATC      ]
[+] EMBL FR0059150            [                                    AATTATACACACGACATCTTCGTAAATATTATCAGAATGGAGGCGATACTCAGCACGGTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGGTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGNGCCGGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAA                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL FR0059350            [                                           CACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGGACCCTCGGCTTGGAATGGATG GACGGCAGCACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGGCCCCTCATTCCACTGTTTGAAGCAT                                                                                                                                                                                                                              ]
[+] EMBL FR0059218            [                                                 ACATCTTCGGAAATAGGATCAGAATGGAGGCGAGACTCACCACCCTCGGCTTGGAATGGATGCCACAGCAGGACCATCCTAATTTTTCTCTTGGCTTTTGTCTTGGTGGCCGAGTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGACCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATT                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL FR0059584            [                                                       TCGGAAATAGGATCAGGAGGGAGGCGATACTCAACACCCTCGCCTCGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGATTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGACCCCTTCCCTTGATCGGAGATCTTCATCGCATCAACCCCTACAGACTTCACTTACAATTCGCAGAGTCCGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTATGGGGGAGAGTCGCTGTTCTGAACGGCTACTAAACTGTGAGAGAGGCA                                                                                                                                                                                                                                                                                         ]
[+] EMBL FR0059225            [                                                        CGGAAATAGGATCAGAATGGAGGCGAGACTCAGCACCCTCGGCTTGGAATGGATG CACAGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGGTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGAGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGATAG                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL FR0059939            [                                                                  ATCAGAATGGAGGCGATACTCAGGACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGGTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGNGGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGGTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGGGGAAAAGGGAGAAAACTTTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTGGCTGGGAATAGAGGGGTGGGTGATAT                                                                                                                                                                                                  ]
[+] EMBL FR0059084            [                                                                     AGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGNGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGA GCACTGGT GAAAAGGGAGAAAAC TTCG AGATCG CCCCTCATTCCACTGT                                                                                                                                                                                                                                       ]


>consensus_2672#0 TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGA AATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATGGACGGCAGG ACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTG CCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATC AACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTC AGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAG GCACTGGTGGAAAAGGGAGAAAACTTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCA TTTGCTGGGAATAGAGGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGA TTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATC CAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTTAT GCCAAGGCACTGATTCATAACGCCGTGTCCAATATCATCTGC



consensusID : consensus_2672#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence
                              [CATCTTCTGAATTAGGACCAGAAGGGAGGCGATGCTCAGGACCCTCCTCTCGGAATCCATTCACTCCACCCACCATCCTAATTTTTCTCTTGGCTTCTGACTTGCGTAGCCGACTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGCCCTTTCCCTTGATCGGCGATCTTCATCGCATCAACCTCTCCAGACTTCACTT]

[+] EMBL FR0059631            [CATCTTCTGAATTAGGACCAGAAGGGAGGCGATGCTCAGGACCCTCCTCTCGGAATCCATTCACTCCACCCACCATCCTAATTTTTCTCTTGGCTTCTGACTTGCGTAGCCGACTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGCCCTTTCCCTTGATCGGCGATCTTCATCGCATCAACCTCTCCAGACTTCACTT]


>consensus_2672#1 CATCTTCTGAATTAGGACCAGAAGGGAGGCGATGCTCAGGACCCTCCTCTCGGAATCCAT TCACTCCACCCACCATCCTAATTTTTCTCTTGGCTTCTGACTTGCGTAGCCGACTACATA AAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGCCCTTTCCCTTGATCGGCGATC TTCATCGCATCAACCTCTCCAGACTTCACTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2672#0      TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGA 60
consensus_2672#1      --------------------------------------------------CATCTTCTGA 10
                                                                        ******* **

consensus_2672#0      AATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATGGACGGCAGG 120
consensus_2672#1      ATTAGGACCAGAAGGGAGGCGATGCTCAGGACCCTCCTCTCGGAATCCATTCACTCCACC 70
                      * ***** ***** ********* ***** ******  ** *****  **  **  **  

consensus_2672#0      -ACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGT-TGGCCGATTACATAAAGAACAGAG 178
consensus_2672#1      CACCATCCTAATTTTTCTCTTGGCTTCTGACTTGCGTAGCCGACTACATAAAGAACAGAG 130
                       ********************** ** ** ****  * ***** ****************

consensus_2672#0      TGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCA 238
consensus_2672#1      TGCCATCAAACTTTCCGCCCGGGCCGTG-CCCTTTCCCTTGATCGGCGATCTTCATCGCA 189
                      **************************** *** ************* *************

consensus_2672#0      TCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTT 298
consensus_2672#1      TCAACCTCTCCAGACTTCACTT-------------------------------------- 211
                      ****** ***************                                      

consensus_2672#0      TCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAG 358
consensus_2672#1      ------------------------------------------------------------
                                                                                  

consensus_2672#0      AGGCACTGGTGGAAAAGGGAGAAAACTTCGTAGATCGTCCCCTCATTCCACTGTTTGAAG 418
consensus_2672#1      ------------------------------------------------------------
                                                                                  

consensus_2672#0      CATTTGCTGGGAATAGAGGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGA 478
consensus_2672#1      ------------------------------------------------------------
                                                                                  

consensus_2672#0      GATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCA 538
consensus_2672#1      ------------------------------------------------------------
                                                                                  

consensus_2672#0      TCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTT 598
consensus_2672#1      ------------------------------------------------------------
                                                                                  

consensus_2672#0      ATGCCAAGGCACTGATTCATAACGCCGTGTCCAATATCATCTGC 642
consensus_2672#1      --------------------------------------------
                                                                  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)