These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 496 fasta sequence [CCCGGCAGNCACACTCGAGCCCTCTGGNCAGTTACCGTCACTCTGCCTGTTCCTCAGATTCACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACACAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA-GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCGAAGTTCACTTTGAGAGCAGGAAAAAGGAAGAAGAGGAGCTGATTCAACTGAAAGAGCGAA] [+] EMBL FR0062578 [CCCGGCAGNCACACTCGAGCCCTCTGGNCAGTTACCGTCACTCTGCCTGTTCCTCAGATTCACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACACAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTCATCGGAAAAGGATGGAGAGGGACC ] [+] EMBL FR0063054 [ CAGATTCACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACACAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGA AGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCGAAGTTCACTTTGAGAGCA ] [+] EMBL FR0062243 [ GATTCACTGCTACAGGAGGAAAAGACTTTCCCTTATGGGTGACACAGAGGAAACGGTGGAGGAGCACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGTAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGA ] [+] EMBL FR0062485 [ TTCACTGCCACTTGAGGAAAAGACTTTCCCTTATGTCTGGCACAGAGGAAACGGTGGAGGAGTACGAGCCAGAAGTGGAAGAAGAGGAGGCCGATGA AGGTGAGCAGGAGGTA GAGGAGGAGGAAGAGGAGGATGCGGAAGAGGTCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGG TTTTGATGATATTCATCGTAAAAGGGATGAGAAGGACC ] [+] EMBL FR0062475 [ CACTGCCACAGGTTGAAAAGACTTTCCCTTATGTCTGACGCAGAGGAAACGGTGGAGGAGTACGAGGAACAAGTGTAAGAAGAGGAGGCCGATGA AGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTTATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGGGGATTTTGATGATTTT ] [+] EMBL FR0062426 [ GGAAAAGACTTTCCCTTATGTCTGACATAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTCATCGTANAAGGATGGAGAAGGAC ] [+] EMBL FR0062915 [ GTAGGAGTACGAGGAAGAAGTGGAAGAAGAGGGGGCCGATGAAGCAGGTGAGCAGGAGGTA GAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAA GGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGGGGATTTTGATGATATTCATCGTAAAAGGATGGGGAAGGACCTGATGGAGCTCCAGACCTTGATCGGAGTTCACTTTGAGAGCAGGAAAAAGGAAG ] [+] EMBL FR0062112 [ ACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGA AGGTGAGCAGGAGGTAGAGGAGGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAATGGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCGAAGATCACTTTGAGAGCAGGAAAAAGGAAGAAGAGGAGCTGATTCAACTGAAAGAGCGAA] consensusID : consensus_2673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 382 fasta sequence [CCTCAGATTCACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACACGAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAAGGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATA-TTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCGAAGGTCACTTTGAGAGCGGGAAAAAGGAAGAGGGGAGCTGA] [+] EMBL FR0062412 [CCTCAGATTCACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGGGGCGAGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAAGGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATATTTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTTGACG ] [+] EMBL FR0062255 [ AGATTTACTGCCACAGGAGGAAAAGACTTTCGGTTATGTCTGACAC AGAGGAAACGGCGCAGGAGTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGA AGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGTAGGGGAAGGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATA TTCATCGTAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCGAAGTTCACTTTGAGAGCAGGAAAAAGGAAGAGGGGAGCTGA] [+] EMBL FR0062947 [ AGACTTTCCCTTATGTCTGACACGGGAGGAAACGGTGGAGGAGTACGAGGAAGAAGTGTAAGAAGAGGAGGCCGATGAAGCAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGAGGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAAGGAGAAGGGGAAGAGGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGATGGAGAAAAAGTGGATTTTGATGATA TTCATCGGAAAAGGATGGAGAAGGACCTGATGGAGCTCCAGACCTTGATCG AGGTCACTTTGAGAGCGGGAAAAAGGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2673#0 CCCGGCAGNCACACTCGAGCCCTCTGGNCAGTTACCGTCACTCTGCCTGTTCCTCAGATT 60 consensus_2673#1 ---------------------------------------------------CCTCAGATT 9 ********* consensus_2673#0 CACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACAC-AGAGGAAACGGTGGAGGA 119 consensus_2673#1 CACTGCCACAGGAGGAAAAGACTTTCCCTTATGTCTGACACGAGAGGAAACGGTGGAGGA 69 ***************************************** ****************** consensus_2673#0 GTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAGGTGAGCAGGAGGTAGAGGA 179 consensus_2673#1 GTACGAGGAAGAAGTGGAAGAAGAGGAGGCCGATGAAGCAG------------------- 110 ***************************************** consensus_2673#0 GGAGGAGGAAGAGGAGGATGCGGAAGAGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGA 239 consensus_2673#1 --------------------------AGGGCTTGCAGGAAGAAGACAAACCTGCTGCAGA 144 ********************************** consensus_2673#0 GGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAAGGAGAAGGGGAAGA 299 consensus_2673#1 GGAGGAGGAAGAGGAAGACCCAGAACACGATGGAGAAGCAGGGGAAGGAGAAGGGGAAGA 204 ************************************************************ consensus_2673#0 GGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGA 359 consensus_2673#1 GGCCAAACCAAAATTCAAGCCATTCATAATGCCTAACCTGATCCCTCCAAAGATTCCTGA 264 ************************************************************ consensus_2673#0 TGGAGAAAAAGTGGATTTTGATGATATTCATCGTAAAAGGATGGAGAAGGACCTGATGGA 419 consensus_2673#1 TGGAGAAAAAGTGGATTTTGATGATATTCATCGTAAAAGGATGGAGAAGGACCTGATGGA 324 ************************************************************ consensus_2673#0 GCTCCAGACCTTGATCGAAGTTCACTTTGAGAGCAGGAAAAAGGAAGAAGAGGAGCTGAT 479 consensus_2673#1 GCTCCAGACCTTGATCGAAGGTCACTTTGAGAGCGGGAAAAAGGAAGA-GGGGAGCTGA- 382 ******************** ************* ************* * ******** consensus_2673#0 TCAACTGAAAGAGCGAA 496 consensus_2673#1 ----------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |