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Takifugu rubripes
cluster # 2674 cluster # 2674       Sequences # 11       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2674#0 length = 456 sequences # 8  
 consensus_2674#1 length = 350 sequences # 2  
consensus_2674#2 length = 285 sequences # 1  
consensusID : consensus_2674#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 456
fasta sequence 
                              [CTGTANCACTAATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGGGCTTCAAGGATATT-GACGCTGCCA-TCCTGGGGGG--CTCCATGCCACGTAAGGAGGGGATGGAGAGGAAGGACCTGCTCAAGGCCAACGTGGCTATTTTCAAGACGCAGGGCGCCGCCCTGGACAAGTATGCCAAGAAGACCGGTAAGGTTCTGGGGGGGCGGAAATCCAGCAAACACCAACTGTCTGATCGCCTCCAAGTCTGCTCCATCTATCCCC]

[+] EMBL FR0062686            [CTGTANCACTAATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAAATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAG CAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGAGAGGTGATCCCCACTGACGAGGTGGAGGGGGGCTTCAAGGATATT GACGCTGCCA T                                                                                                                                                                                                 ]
[+] EMBL FR0063070            [     gCACTAATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCGGCTGGCCAGATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGGGCTTCAAGGATATT GACGCTGCCA TCCTGGTGGG  CTCCATGCCACGTAAGGAGGGGATGGAGAGGAAGGACCTGCTCAAGGCCAACGTGGCTATTTTCAAGACGCAGGGCGCCGCCCTGGACAAGTATGCCAAGAAGACCGTTAAGGTTCT GGGGGGCGGAAATCCAGCAAACACCAACTGTCTGATCGCCTCCAAGTCTGCTCCATCTATCCCC]
[+] EMBL FR0062724            [                 GAACCTATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGATCGCCTACTCTCTGCTGTACAGCATCTCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGGGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCCCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGGGGAAGGGGTCTTCAAGGAAATTGGACGCCGCCATTCCTGGGGGGGCTTCCAT                                                                                                                                                                                ]
[+] EMBL FR0062931            [                         CCGTGTTGTTGTGACTGGCGCCGCTGGCCAGATCGGGTACTCTCTGCTGGGCAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGGCCTGTTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGGGCTTCAAGGATATT GACGCTGCCA TCCTGGGGGG  CTCCATGCCACGTAAGGAGGGGATGGAGAGGAAGGACCTGCTCAAGGCCAACGTGGCTATTTTCAAGACGCAGGGCGCCGCCCTGGACAAGTATGCCAAGAAGACCGGTAAGGTTCTGGGGGGGCGGAAAT                                                   ]
[+] EMBL FR0062690            [                              TTGTTGTGACTGGCGCCGCT GCCAGATCTCCTACTCTCTGCTGTACAGCATCGCCAAGAGAGATGTGTTTGGCAAGCACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGTGCTTCAAGGATATT GACGCTGCCA TCCTGGGGGG  CTCCATGCCACGTAAGGAGGGGATTGAGAGGAAGG                                                                                                                                                   ]
[+] EMBL FR0062141            [                                     GACTGGGGCCGCTGTCCAGATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGCGGTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGGGGGCTTCAAGGATATT GACGCTGCCA TTCTGGTGGG  CTCCATGCCACGTAAGGAGGGGATGGTGAGGAAGGACCTGCTTAAGGCCAACGTGGCTATTT                                                                                                                        ]
[+] EMBL FR0063000            [                                         GGCGCCGCTGGCCAGATCGGCTACTCTCTGCTGTACAGCATCGCCAAGGGAGGTGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGGGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGGGATCCCCACTGACGAGGTGGAGGTGGGCTTCAAGGATATT GACGCTGCCA TCCTG                                                                                                                                                                                             ]
[+] EMBL FR0062826            [                                                 TGGCCAGATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGGGCTTCAAGGATATT GACGCTGCCA TCCTGGTGGG  CTCCATGCCACG                                                                                                                                                                          ]




>consensus_2674#0
CTGTANCACTAATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGATCG
CCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCA
TCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGC
TGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGG
GCTTCAAGGATATTGACGCTGCCATCCTGGGGGGCTCCATGCCACGTAAGGAGGGGATGG
AGAGGAAGGACCTGCTCAAGGCCAACGTGGCTATTTTCAAGACGCAGGGCGCCGCCCTGG
ACAAGTATGCCAAGAAGACCGGTAAGGTTCTGGGGGGGCGGAAATCCAGCAAACACCAAC
TGTCTGATCGCCTCCAAGTCTGCTCCATCTATCCCC

consensusID : consensus_2674#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 350
fasta sequence 
                              [ATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGGTGGCCAGAGGGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGAGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGGAGGACGGTCATAAATGACAACTGGGATTGGCTGATGATGAAGGAGCC-TCAGCAGCAAATCAGAGCAGGAGGCAGGAAGGGACATGACTGAAGCCCAGACTGAAAACAACATAATCAACGGGGAAGGCATCATATCGCCAGTTTATCTGGA]

[+] EMBL FR0062634            [ATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGGTGGCCAGATCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGGAGGACGGTCATAAATGACAACTGGGATTGGCTGATGATGAAGGAGCCTTCAGCAGCAAATCAGAGCAGGCAGCAGGAAGGGACATGACTGAAGTCCAGACTGATAACAACATAATCAACGGGGAAGGCATCATATCGCCAGTTTATCTGGA]
[+] EMBL FR0059232            [                   TTGTTGTGACTGACGCCGCTGGCCAGAGGGCCTACTCTCTGCTGTACAGCATCGCCCAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGAGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGCGCCCTCCCACTTTTGAGGGGAGGACGGTCATAAATGACAACTGCGATTGGCTGATGATGAAGGAGCC TCAGCAGCAAATCAGAGCAGCAGTCAGGAA GGACATGACTGAAGCCCAGACTGAAAACAACATAATCAACa                               ]




>consensus_2674#1
ATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGGTGGCCAGAGGGCCTACTCTCTG
CTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCATCCTGGTCCTG
CTGGACATCCCCCCCATGCTGCCGGAGCTGGACGGAGTTGTCATGGAGCTGCAGGATTGC
GCCCTCCCACTTTTGAGGGGAGGACGGTCATAAATGACAACTGGGATTGGCTGATGATGA
AGGAGCCTCAGCAGCAAATCAGAGCAGGAGGCAGGAAGGGACATGACTGAAGCCCAGACT
GAAAACAACATAATCAACGGGGAAGGCATCATATCGCCAGTTTATCTGGA

consensusID : consensus_2674#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence 
                              [ACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGAGCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGGTAAGAACCTGGATGCTGGGCATGTAATCTGCAGAGATGCTATGTTACATAATGGCTGAACCATGAATGATGATATCATACTAACATGACAATCACGCCTGTGGTAATGCTTTAATCTCCGCAAAGATCAGGAGGGATGAGTTTCAGTTGTACGCGCTGAGGCCAGAGGCAGAACTGACTCAATCTTCATT]

[+] EMBL FR0060151            [ACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGAGCGCCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGGTAAGAACCTGGATGCTGGGCATGTAATCTGCAGAGATGCTATGTTACATAATGGCTGAACCATGAATGATGATATCATACTAACATGACAATCACGCCTGTGGTAATGCTTTAATCTCCGCAAAGATCAGGAGGGATGAGTTTCAGTTGTACGCGCTGAGGCCAGAGGCAGAACTGACTCAATCTTCATT]




>consensus_2674#2
ACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGAGCGCCTACTCTCTGCTGTACAG
CATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGGTAAGAACCTGGATGCTGGGCATGTA
ATCTGCAGAGATGCTATGTTACATAATGGCTGAACCATGAATGATGATATCATACTAACA
TGACAATCACGCCTGTGGTAATGCTTTAATCTCCGCAAAGATCAGGAGGGATGAGTTTCA
GTTGTACGCGCTGAGGCCAGAGGCAGAACTGACTCAATCTTCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2674#0      CTGTANCACTAATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGATCG 60
consensus_2674#1      -----------ATGGCTGAACCGATCCGTGTTGTTGTGACTGGCGCCGGTGGCCAGAGGG 49
consensus_2674#2      -------------------ACCGATCCGTGTTGTTGTGACTGGCGCCGCTGGCCAGAGCG 41
                                         ***************************** ********  *

consensus_2674#0      CCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCA 120
consensus_2674#1      CCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGCCAATCA 109
consensus_2674#2      CCTACTCTCTGCTGTACAGCATCGCCAAGGGAGATGTGTTTGGGAAGGACCAGGTAAGAA 101
                      *****************************************************  **  *

consensus_2674#0      TCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGTGCTGGACGGAGTTGTCATGGAGC 180
consensus_2674#1      TCCTGGTCCTGCTGGACATCCCCCCCATGCTGCCGGAGCTGGACGGAGTTGTCATGGAGC 169
consensus_2674#2      CCTGGAT---GCTGGGCATGTAATC--TGCAGA-GATGCTATGTTACATAATGGCTGAAC 155
                       *  * *   ***** ***     *  *** *  *  ***        *  *    ** *

consensus_2674#0      TGCAGGATTGCGCCCTCCCACTTTTGAGGGAGGTGATCCCCACTGACGAGGTGGAGGTGG 240
consensus_2674#1      TGCAGGATTGCGCCCTCCCACTTTTGAGGGGAG-GACGGTCATAAATGAC----AACTGG 224
consensus_2674#2      CAT-GAATGATGATATCATACTAACATGACAAT-CACGCCTGT-GGTAATG---CTTTAA 209
                          * **   *   **  ***     *       *            *        *  

consensus_2674#0      GCTTCAAGGATATTGACGCTGCCATCCTGGGGGGCTCCATGCCACGTAAGGAGGGGATGG 300
consensus_2674#1      GATTGGCTGATGATGAAGGAGCC--TCAGCAGCAAATCAGAGCAGG--AGGCAGGAAGGG 280
consensus_2674#2      TCTCCGCAAAGATCAGGAGGGATGAGTTTCAGTTGTACGCGCTGAG---GCCAGAGGCAG 266
                        *      *          *          *     *       *   *   *     *

consensus_2674#0      AGAGGAAGGACCTGCTCAAGGCCAACGTGGCTATTTTCAAGACGCAGGGCGCCGCCCTGG 360
consensus_2674#1      ACATGACTGAA--GCCCAGACTGAAAACAAC-ATAATCAACGGGGAAGGCATCATATCG- 336
consensus_2674#2      AACTGACTCAA-TCTTCATT---------------------------------------- 285
                      *   **   *      **                                          

consensus_2674#0      ACAAGTATGCCAAGAAGACCGGTAAGGTTCTGGGGGGGCGGAAATCCAGCAAACACCAAC 420
consensus_2674#1      -CCAGTTTATCTGGA--------------------------------------------- 350
consensus_2674#2      ------------------------------------------------------------
                                                                                  

consensus_2674#0      TGTCTGATCGCCTCCAAGTCTGCTCCATCTATCCCC 456
consensus_2674#1      ------------------------------------
consensus_2674#2      ------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)