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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[TCTGTAAGAGCATCTCAACAAAGACTGGTTTTGTTCAAAGAAACCCTTCAGGAACCTGCAGCTAAAATGGCCACTGAGAAAAGACTCTCTGCAAGACGTAAGCATACACTGAAAAGCTGTCTGCTGGTCGTGGCTGGAAATTTACTGGAGGCAGAGTCAGTGGTGAAGGTGGAGGAGAGGGAGAAATACCTGGCAGATAAATGCCCTCCTCTGGAGCTGCCATACTCCAGGGACGAGCTCATGGAACTCTGTAAACAGCTTCATCAGCAGGTTGGTGTCAGTGAGGAGGAGCGATACTGCATTGAGTTTAAGCTAAACATGGTTCTGAATGAGGTACGAGACCTGAACATAAAGATCGTAGATTTGAGGGGAAAGTTCAAAAGACCACGTCTGAAGAAAGTCCGTATGTCTGCTGACGCCATGTTGAAAGCTCTGCTGGGCTCCAAACACACAGTCAACATGGATCTGAGGGCTAACTTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGGACAAGCAGCTCCGTGATGTTGGAGACTGGCGTAAGAATGTGGAGGACAAGTCTGACAGGAAGAAGATGTTTGATAGTTAAATGTGAGCTGTCCTTGGTTGTCCATGACATTTCAGAATGCGGTGTTAGCTTTCAAGTGAAGAGTTTTA]
[+] EMBL CA588659 [TCTGTAAGAGCATCTCAACAAAGACTGGTTTTGTTCAAAGAAACCCTTCAGGAACCTGCAGCTAAAATGGCCACTGAGAAAAGACTCTCTGCAAGACGTAAGCATACACTGAAAAGCTGTCTGCTGGTCGTGGCTGGAAATTTACTGGAGGCAGAGTCAGTGGTGAAGGTGGAGGAGAGGGAGAAATACCTGGCAGATAAATGCCCTCCTCTGGAGCTGCCATACTCCAGGGACGAGCTCATGGAACTCTGTAAACAGCTTCATCAGCAGGTTGGTGTCAGTGAGGAGGAGCGATACTGCATTGAGTTTAAGCTAAACATGGTTCTGAATGAGGTACGAGACCTGAACATAAAGATCGTAGATTTGAGGGGAAAGTTCAAAAGACCACGTCTGAAGAAAGTCCGTATGTCTGCTGACGCCATGTTGAAAGCTCTGCTGGGCTCCAAACACACAGTCAACATGGATCTGAGGGCTAACTTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGGACAAGCAGCTCCGTGATGTTGGAGACTGGCGTAAGAATGTGGAGGACAAGTCTGACAGGAAGAAGATGTTTGATAGTTAAATGTGAGCTGTCCTTGGTTGTCCATGACATTTCAGAATGCGGTGTTAGCTTTCAAGTGAAGAGTTTTA]
consensusID : consensus_2676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 551 fasta sequence
[AAACAAACCAGCACCAT-GTCTGAG-AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT---AAACACACAGTGAACCTTGACCTGAGGGCCAACCTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGCCTGCAGATGTGGGCGACTGGCGGAAGAACATTGAGGACAAAGCCGACAGGAAGAAGATGTTTGAGACCTCATAAACTACTGAAGCCTTTGTTGCAGG]
[+] EMBL FR0063829 [AAACAAACCAGCACCAT GTCTGAG AAGAAGATGTCGTCGAGCCGCAGCCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGCATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTC ]
[+] EMBL FR0055725 [AAACAAACCAGCACCAT GTCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCTAAAAAACACACAGTGAACCTTGACCTGAAGGCCAACCTGAAGCAGGTGAAGAAAGACGTGAAAGAAGAGCCTGCAGATGTGGG ]
[+] EMBL BU804644 [ CAAACCAGCACCAT GTCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGAACCTTGACCTGAGGGCCAACCTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGCCTGCAGATGTGGGCGACTGGCGGAAGAACATTGAGGACAAAG ]
[+] EMBL FR0055548 [ AAACCAGCACCAT GTCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGCTTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGACAAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGAACCTTGACCTGAGGGCCAACCTGAAGCAGGTGACGAAGGAGGTGGAAGAGGATCCTGCAGATGTGGG ]
[+] EMBL FR0055392 [ CAGCACCAT GTCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAGAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAAAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGGACCCTTACCTGA ]
[+] EMBL FR0055207 [ AGCACCATAGTCTGAGTAAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGAACCTTGACCTGAGGGCCAACCTGAAGCAGGTGAAGAAGGACGTGAAAGAAGAGCCTGCAGATGTGGGCGACTGGCGGCAGAACATTGAGGACACAGCCGACAGGAAGAAGATGTTTGAGACCTCATAAACTACTGAAGCCTTTGTTGCAGG]
[+] EMBL FR0063928 [ T GTCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTG ]
[+] EMBL BU804774 [ ccCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCACCTA AATGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAACGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGAACCTTGACCTGAGGGCCAACCTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGCCTGCAGATGTGGGCGACTGGCGGA ]
[+] EMBL FR0055727 [ AGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCATATTGGGTTGTTCAGGAGATAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGCGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACCAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGATCCAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGATGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGAACCTTGACCTGATGGCCAACCTGAAGCAGGTGAAGAAGGAGGTGAAAGAAGAGCCTGCAGATGTGGGC ]
consensusID : consensus_2676#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[GTTTGATAGTTAAATGTGAGCTGTCCTTGGTTGTCCATGACATTTCAGAATGCGGTGTTAGCTTTCAAGTGAAGAGTTTTATCCCAAAATGTTGCATGTTGACTTTAAACCTCACACTTTGGACTGTGAGACAGAGAAATCCCTTCAACACATGATAAGCATGTACAGTATATTTAAGTTAAAGTCATTGTGATTTGAGTCACTTCCTTCATTTAATAATGAGGACTCAGACTCTTCAGTTGAATGAATGTTGCTGTTTTGTCATTGGACATGTTTCTACCGTCTCCCTGCTTTTGTGCAGACCATGCAGACCTATTCTTCTGTATCCAAAAGTCACTTTATCACTTTTACAGTCATATTAAAGGTTTGTCCAGCTCACACACATCATAGATATTGATGACAACCCTAAATGAAGTTCTTCAAAACCTTTGGGTCTCCACTACATATAATACATTGGGGGACAGC]
[+] EMBL FR0055263 [GTTTGATAGTTAAATGTGAGCTGTCCTTGGTTGTCCATGACATTTCAGAATGCGGTGTTAGCTTTCAAGTGAAGAGTTTTATCCCAAAATGTTGCATGTTGACTTTAAACCTCACACTTTGGACTGTGAGACAGAGAAATCCCTTCAACACATGATAAGCATGTACAGTATATTTAAGTTAAAGTCATTGTGATTTGAGTCACTTCCTTCATTTAATAATGAGGACTCAGACTCTTCAGTTGAATGAATGTTGCTGTTTTGTCATTGGACATGTTTCTACCGTCTCCCTGCTTTTGTGCAGACCATGCAGACCTATTCTTCTGTATCCAAAAGTCACTTTATCACTTTTACAGTCATATTAAAGGTTTGTCCAGCTCACACACATCATAGATATTGATGACAACCCTAAATGAAGTTCTTCAAAACCTTTGGGTCTCCACTACATATAATACATTGGGGGACAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2676#0 TCTGTAAGAGCATCTCAACAAAGACTGGTTTTGTTCAAAGAAACCCTTCAGGAACCTGCA 60
consensus_2676#1 ---------------------------------------------------AAACA---A 6
consensus_2676#2 ------------------------------------------------------------
consensus_2676#0 GCTAAAATGGCCACTGAGAAAAGACTCTCTGCAAGACGTAAGCATACACTGAAAAGCTGT 120
consensus_2676#1 ACCAGCACCATGTCTGAGAAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTG 66
consensus_2676#2 ----GTTTGATAGTTAAATGTGAGCTGTCCTTGGTTGTCCATGACATTTCAGAATGCGGT 56
* * * ** * * *
consensus_2676#0 CTGCTGGTCGTGGCTGGAAATTTACTGGAGGCAGAGTCAGTGGTGAAGGTGGA--GGAGA 178
consensus_2676#1 ATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGC--TGCCA 124
consensus_2676#2 GTTAGCTTTCAAGTGAAGAGTTTTATCCCAAAATGTTGCATGTTGACTTTAAACCTCACA 116
* * * ** * * * *
consensus_2676#0 GGGAGAAATACCTGGCAGATAAATGCCCTCCTCTGGAGCTGCCATACTCCAGGGACGAGC 238
consensus_2676#1 AGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTC 184
consensus_2676#2 CTTTGGACTGTGAGACAGAGAAATCCCTTCAACACATGATAAGCATGTACAGTAT--ATT 174
* * * * ** *** * * * * *
consensus_2676#0 TCATGGAACTCTGTAAACAGCTTCATCAGCAGGTTGGTGTCAGTGAGGAGGAGCGATACT 298
consensus_2676#1 TCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATG 244
consensus_2676#2 TAAGTTAAAGTCATTGTGATTTGAGTCACTTCCTTCAT-TTAATAATGAGGACTCAGACT 233
* * ** * * * ** * ** ** *
consensus_2676#0 GCATTGAGTTTAAGCTAAACATGGTTCTGAATGAGGTACGAGACCTGAACATAAAGATCG 358
consensus_2676#1 ACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGA 304
consensus_2676#2 --CTTCAGTTGAA--TGAATGTTGCTGTTT-TGTCATTGGACATGTTTCTACCGTCTCCC 288
* ** ** * * * * * * *
consensus_2676#0 TAGATTTGAGGGGAAAGTTCAAAAGACCACGTCTGAA---GAAAGTCCGTATGTC--TGC 413
consensus_2676#1 TTGACCTGGCTGGT--GTGAAGAAGCCCGC-CCTGAA---GAAAGTCCGTATGTC--CGC 356
consensus_2676#2 TGCTTTTGTGCAGACCATGCAGACCTATTCTTCTGTATCCAAAAGTCACTTTATCACTTT 348
* ** * * * * * *** * ****** * * **
consensus_2676#0 TGACGCCATGTTGAAAGCTCTGCTGGGCTCCAAACACACAGTCAACATGGATCTGAGGGC 473
consensus_2676#1 CGATGCCATGTTGAAAGCTCTGCTGGGCTCTAAACACACAGTGAACCTTGACCTGAGGGC 416
consensus_2676#2 TACAGTCATATTAAAGGTT-TGTCCAGCTC-ACACACATCATAGATATTGATGACAACCC 406
* *** ** ** * * ** **** * ***** * * * ** * *
consensus_2676#0 TAACTTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGGACAAGCAGCTCCGTGATGTTGG 533
consensus_2676#1 CAACCTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAG--CCTGCAG-------ATGTGGG 467
consensus_2676#2 TAAA-TGAAGTTCTTCAAAACCTT--TGGGTCTCCACTACATATAAT------ACATTGG 457
** ***** * ** * ** * * * * * **
consensus_2676#0 AGACTGGCGTAAGAATGTGGAGGACAAGTCTGACAGGAAGAAGATGTTTGATAGTTAAAT 593
consensus_2676#1 CGACTGGCGGAAGAACATTGAGGACAAAGCCGACAGGAAGAAGATGTTTGAGACCTCATA 527
consensus_2676#2 GGGACAGC---------------------------------------------------- 465
* **
consensus_2676#0 GTGAGCTGT--CCTTGGTTGTCCATGACATTTCAGAATGCGGTGTTAGCTTTCAAGTGAA 651
consensus_2676#1 AACTACTGAAGCCTTTGTTGCAGG------------------------------------ 551
consensus_2676#2 ------------------------------------------------------------
consensus_2676#0 GAGTTTTA 659
consensus_2676#1 --------
consensus_2676#2 --------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |