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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 820 fasta sequence
[GGCATTCTTTATCAGGTGGATGTCCTGCTGGGATCGCTCACTGCAGCCTCGCTCAGCCTGGAAACACCTTCTTCTGCTG-GAGCTCACGCCACCCTGAGCCAGGATGC-CCAAAACGGTCAA-CGTGCGCGTC-ACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC-ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGTGCTTCTGGCCTCGTACGCCATCCAGGTCAAGTACGGCGAGTACGACAAGTCCAAGCATCAAGCGGGTTACCTTTCATCAGAGCGCCTGTTGCCAAGGAGGGTGCTGGAACAGCATCGGCTCTCCAAGGAACAGTGGGAGGACAGGATCCAGGTCTGGCACCAAGAGCATGGAGCCATGCTCAAGGAAGAGGCAATGACCGAATACCTGAAAATCACCCAGGACCTGGAGATGTACGGCATCAATTACTTTGACATCAAGAACAAGAAGGGCACGGACCTGTGGCTGGGGGTCGACGCTCTGGGCATCAACGTCTACGGGAAGCAGGACAAGCTGACGCCCAAAATCGGC]
[+] EMBL CA590086 [GGCATTCTTTATCAGGTGGATGTCCTGCTGGGATCGCTCACTGCAGCCTCGCTCAGCCTGGAAACACCTTCTTCTGCTG GAGCTCACGCCACCCTGAGCCAGGATGC CCAAAACGGTCAA CGTGCGCGTC ACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGTGCTTCTGGCCTCGTACGCCATCCAGGTCAAGTACGGCGAGTACGACAAGTCCAAGCATCAAGCGGGTTACCTTTCATCAGAGCGCCTGTTGCCAAGGAGGGTGCTGGAACAGCAT ]
[+] EMBL CA590149 [ AGCCTCGCTCAGCCTGGATACACCTTCTTCTGCTG GAGCTCACGCCACCCTGAGCCAGGATGC CCAAAACGGTCAA CGTGCGCGTC ACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGTGCTTCTGGCCTCGTACGCCATCCAGGTCAAGTACGGCGAGTACGACAAGTCCAAGCATCAAGCGGGTTACCTTTCATCAGAGCGCCTGTTGCCAAGGAGGGTGCTGGAACAGCATCGGCTCTCCAAGGAACAGTGGGAGGACAGGATCCAGGTCTGGCACCAAGAGCATGGAGCCATGCTC ]
[+] EMBL FR0059984 [ CCTGGAAACACCTTCTTCTGCTG GAGCTCACGCCACCCTGAGCCAGGATGG GGAGAACGGTCAA CGTGCGCGTC ACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGGCGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTTCGTTGCAGCTCAAGATGAGGGGCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTTCTGGCAGGGAAGGAGAACATCCTGTCC ]
[+] EMBL FR0059733 [ TTCTGCTGTTAGCTCACGCCACTCTGAGCCAGGATGCGGCAAAACGGTCAA CGTGCGCGTC ACTACGATGNACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGGGGTTCTGGCCTCGTACGCCATCCAGGTCAA ]
[+] EMBL FR0059555 [ TG GAGCTCACGCCACCCTGAGCCAGGATGC CCGGAACGGTCAA CGTGCGCGTC ACTACGGCGGACGCAGAGCTGGAGGTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGTTACTTTGGGCTCCAGTACACGGACTGCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATCAACCAAGAGGCTTTTTTTCCTGCAGGGGAAGGA AACATCCTGGCCGAGGA ]
[+] EMBL FR0059982 [ CCAGGATGC CCAAAACGGTCAA CGTGCGCGTC ACTACGGTGGACGCGGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTTCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATTTACTGTCCCCCGGAGACCGCCGTGCTT TGGC ]
[+] EMBL FR0059550 [ CAGGATGG GCAAAACTGTCAATCGTGCGCG C ACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGTCCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGGACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATC ]
[+] EMBL CA588248 [ AAACGGTCAA CGTGCGCGTC ACTACGGTGGACGCAGATCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGTTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGTGCTTCTGGCCTCGTACGCCATCCAGGTCAAGTACGGCGAGTACGACAAGTCCAAGCATCAAGCGGGTTACCTTTCATCAGAGCGCCTGTTGCCAAGGAGGGTGCTGGAACAGCATCGGCTCTCCAAGGAACAGTGGGAGGACAGGATCCAGGTCTGGCACCAAGAGCATGGAGCCATGCTCAAGGAAGAGGCAATGACCGAATACCTGAAAATCACCCAGGACCTGGAGATGTACGGCATCAATTACTTTGACATCAAGAACAAGAAGGGCACGGACCTGTGGCTGGGGGTCGACGCTCTGGGCATCAACGTCTACGGGAAGCAGGACAAGCTGACGCCCAAAATCGGC]
[+] EMBL FR0060008 [ GTCAA CGTGCGCGTCGAGTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGA ]
consensusID : consensus_2677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence
[ACGTGCGCGTCACTACTGAGGACGCAAAGGTGGGAGTTTTCCTTCCAATCGCCAACACCACAAGAAAGAAGTTGTTCTACCAAATTGCTCGGACCATCGGAACTGGGGGGAGACCTGTCTACTTTGGATCTCCAGATACACGGTACGGCAAAGGAACGACTTCCTGGCTGAATCCTGACAACAATGTGATGCCTCTCGACATGAATAAGGAGATTCCGATGCAGATCGAGATGAGGGACTAGTTTTACCCTGACGACGCGGCTGAGGAGCTGATCCAAGACATCACCAAGAGGCTGTTTTTCCTGCAGGTGAAAGAGAACATCCTGTCCGATGACATCTACTGCTCCCCGGAGAGCGTCGTGCTTCTGGACTCATACGCCATCCATGTTAAGTACGGCGAGCACGACAAGTCCAAGCATCAAGCGCCTTACCTTGCATCACAGCGCCTGATGTCAAGGATGGTGGTGGAACAGCATCGGTTCTCCAAGGAACAGCGCGGGGACAGGATCCGGGTCTGGCACAAAGACCATGGAGCCATGTTCAAGGAA]
[+] EMBL CA589619 [ACGTGCGCGTCACTACTGAGGACGCAAAGGTGGGAGTTTTCCTTCCAATCGCCAACACCACAAGAAAGAAGTTGTTCTACCAAATTGCTCGGACCATCGGAACTGGGGGGAGACCTGTCTACTTTGGATCTCCAGATACACGGTACGGCAAAGGAACGACTTCCTGGCTGAATCCTGACAACAATGTGATGCCTCTCGACATGAATAAGGAGATTCCGATGCAGATCGAGATGAGGGACTAGTTTTACCCTGACGACGCGGCTGAGGAGCTGATCCAAGACATCACCAAGAGGCTGTTTTTCCTGCAGGTGAAAGAGAACATCCTGTCCGATGACATCTACTGCTCCCCGGAGAGCGTCGTGCTTCTGGACTCATACGCCATCCATGTTAAGTACGGCGAGCACGACAAGTCCAAGCATCAAGCGCCTTACCTTGCATCACAGCGCCTGATGTCAAGGATGGTGGTGGAACAGCATCGGTTCTCCAAGGAACAGCGCGGGGACAGGATCCGGGTCTGGCACAAAGACCATGGAGCCATGTTCAAGGAA]
consensusID : consensus_2677#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[TTGGATGACTCACTGCAGCCTCGCTCAGCCTGGAAACACCTCTATCAGCTGGAGCTCACGCCACCCTGAGCCAGGATGCCCAAAACGGTCAACGTGCGCGTCACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAGTCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTTAACNCCCTGGAGGGTATCTTTTTTTGTCTTGGAAGGGGAGGCCTGTATCTCCAAGGGACCAATTCACCCAAA]
[+] EMBL CA591630 [TTGGATGACTCACTGCAGCCTCGCTCAGCCTGGAAACACCTCTATCAGCTGGAGCTCACGCCACCCTGAGCCAGGATGCCCAAAACGGTCAACGTGCGCGTCACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAGTCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTTAACNCCCTGGAGGGTATCTTTTTTTGTCTTGGAAGGGGAGGCCTGTATCTCCAAGGGACCAATTCACCCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2677#0 GGCATTCTTTATCAGGTGGATGTCCTGCTGGGATCGCTCACTGCAGCCTCGCTCAGCCTG 60
consensus_2677#1 ------------------------------------------------------------
consensus_2677#2 ----------------------------TTGGATGACTCACTGCAGCCTCGCTCAGCCTG 32
consensus_2677#0 GAAACACCTTCTTCTGCTGGAGCTCACGCCACCCTGAGCCAGGATGCCCAAAACGGTCAA 120
consensus_2677#1 -----------------------------------------------------------A 1
consensus_2677#2 GAAACACCTCTATCAGCTGGAGCTCACGCCACCCTGAGCCAGGATGCCCAAAACGGTCAA 92
*
consensus_2677#0 CGTGCGCGTCACTACGGTGGACGCAGAGCTGG-AGTTTTCCTTCCAGCC--CAACACCAC 177
consensus_2677#1 CGTGCGCGTCACTACTGAGGACGCAAAGGTGGGAGTTTTCCTTCCAATCGCCAACACCAC 61
consensus_2677#2 CGTGCGCGTCACTACGGTGGACGCAGAGCTGG-AGTTTTCCTTCCAGCC--CAACACCAC 149
*************** * ******* ** *** ************* * *********
consensus_2677#0 AGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGG--CCTGCGGGAGACCTGG-TA 234
consensus_2677#1 AAGAAAGAAGTTGTTCTACCAAATTGCTCGGACCATCGGAACTGGGGGGAGACCTGTCTA 121
consensus_2677#2 AGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGG--CCTGCGGGAGACCTGG-TA 206
* * *** ** ***** **** ***************** * * ********** **
consensus_2677#0 CTTTGGG-CTCCAG-TACACGG-ACGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAA 291
consensus_2677#1 CTTTGGATCTCCAGATACACGGTACGGCAAAGGAACGACTTCCTGGCTGAATCCTGACAA 181
consensus_2677#2 CTTTGGG-CTCCAG-TACACGG-ACGTCAAAGGAACGACTTCCTGGCTGAGTCCTGACAA 263
****** ****** ******* *** ************ ********** *********
consensus_2677#0 GAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAA 351
consensus_2677#1 CAATGTGATGCCTCTCGACATGAATAAGGAGATTCCGATGCAGATCGAGATGAGGGACTA 241
consensus_2677#2 GAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAA 323
** ****** *** ******** ************ ***** ** ********* * *
consensus_2677#0 GTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATCACCAAGAGGCTTTTTTT 411
consensus_2677#1 GTTTTACCCTGACGACGCGGCTGAGGAGCTGATCCAAGACATCACCAAGAGGCTGTTTTT 301
consensus_2677#2 GTTTT----TAACNCCCTGGA-GGGTATCTTTTTT----TGTCTTGGAAGGGGAGG---- 370
***** * * * ** * * * ** * ** * **
consensus_2677#0 CCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGT 471
consensus_2677#1 CCTGCAGGTGAAAGAGAACATCCTGTCCGATGACATCTACTGCTCCCCGGAGAGCGTCGT 361
consensus_2677#2 CCTGTATCTCCAAGGGACCAATTCACCCAAA----------------------------- 401
**** * * * * ** ** ** *
consensus_2677#0 GCTTCTGGCCTCGTACGCCATCCAGGTCAAGTACGGCGAGTACGACAAGTCCAAGCATCA 531
consensus_2677#1 GCTTCTGGACTCATACGCCATCCATGTTAAGTACGGCGAGCACGACAAGTCCAAGCATCA 421
consensus_2677#2 ------------------------------------------------------------
consensus_2677#0 AGCGGGTTACCTTTCATCAGAGCGCCTGTTGCCAAGGAGGGTGCTGGAACAGCATCGGCT 591
consensus_2677#1 AGCGCCTTACCTTGCATCACAGCGCCTGATGTCAAGGATGGTGGTGGAACAGCATCGGTT 481
consensus_2677#2 ------------------------------------------------------------
consensus_2677#0 CTCCAAGGAACAGTGGGAGGACAGGATCCAGGTCTGGCACCAAGAGCATGGAGCCATGCT 651
consensus_2677#1 CTCCAAGGAACAGCGCGGGGACAGGATCCGGGTCTGGCACAAAGACCATGGAGCCATGTT 541
consensus_2677#2 ------------------------------------------------------------
consensus_2677#0 CAAGGAAGAGGCAATGACCGAATACCTGAAAATCACCCAGGACCTGGAGATGTACGGCAT 711
consensus_2677#1 CAAGGAA----------------------------------------------------- 548
consensus_2677#2 ------------------------------------------------------------
consensus_2677#0 CAATTACTTTGACATCAAGAACAAGAAGGGCACGGACCTGTGGCTGGGGGTCGACGCTCT 771
consensus_2677#1 ------------------------------------------------------------
consensus_2677#2 ------------------------------------------------------------
consensus_2677#0 GGGCATCAACGTCTACGGGAAGCAGGACAAGCTGACGCCCAAAATCGGC 820
consensus_2677#1 -------------------------------------------------
consensus_2677#2 -------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |