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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 676 fasta sequence
[GCTGCTTCGGAGCCTTTACCTGTGTGCGTGCGCGCGCTTGTGTTTGTTCGTGAACGTGCGGCGTCCAACTTCCTGCCAAACGGGTTTGACGAGGACACACCTGCGGGAGTAAAAGGGAGCGCTTGGAGCTCGGACGCCATTCTTGCCCGTGTGTGACTTCGGAACCGGACCGATAGAACCTTCGCTTCGGTCGTTTTGCTCGATTTTAATCATGAAAATGTGGATTGTGCTCGTTCTCGCGGGCTTCGCGTTGGGAGCCTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTTCGTTTTGGGGGATGGTGGGGGCAAGCAAACGCTAGAGTGCGATAAATTGATCCCCAAATGCTTCCTAATGAAGGCAGAGATGTATCGAGCCAGGAAGAACCTGGACACTCGTACTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGATGGCATCTATGACCCAGACTGGGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGGGCGGCGAACTGACAAGGGCGACAAGGACCTGAAGTGTGAGAAACTCGTGGAGACGCAGAGAGTAGTTGATCCCGAGGATTGGGGCGGTGGGGCGATT]
[+] EMBL FR0058624 [GCTGCTTCGGAGCCTTTACCTGTGTGCGTGCGCGCGCTTGTGTTTGTTCGTGAACGTGCGGCGTCCAACTTCCTGCCAAACGGGTTTGACGAGGACACACCTGCGGGAGTAAAAGGGAGCGCTTGGAGCTCGGACGCCATTCTTGCCCGTGTGTGACTTCGGAACCGGACCGATAGAACCTTCGCTTCGGTCGTTTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCCTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTTCGTTTTGGGGGATGGTGGGGGCAAGCAAACGCTAGAGTGCGATAAATTGATCCCCAAAT ]
[+] EMBL FR0058363 [ GTTTTGCTCGATTTTAATCATGAAAATGTGGATTGTGCTCGTTCTCGCGGGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTTCGTTTTGGTGGATGGTGGTGTCAAGCAAACGCTAGAGTGCGATAAATTGATCCCCAAATGCTTCCTAATGAAGGCAGAGATGTATCGAGCCAGGAAGAACCTGGACACTCGTACTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGATGGCATCTATGACCCAGACTGGGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGG GGGCGGCG ]
[+] EMBL FR0062024 [ TGATCCCCAAATGCTTCCTAATGAAGGCAGAGATGTATCGAGCCAGGAAGAACCTGGACACTCGTACTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGATGGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAGGGCGACAAGGACCTGAAGTGTGAGAAACTCGTGGAGACGCAGAGAGTAGTTGATCCCGAGGATTGGGGCGGTGGGGCGATT]
consensusID : consensus_2684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 615 fasta sequence
[GACTTCGGAACCGGACCGATAGAACCTTTGCTTCGGTCTTTTTGCTCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATGGTGTCAAGCAAACGCTAGACTGCGATAAATTGATCCCCAAATGCTTC-CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT-GGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAGGGCGACAAAGACCTGAAGTGTGAGAAACTCGTGGAGACGCACTTTATCCGGCTGCAGCTCACGCACAAACCAACGCCAGACCCGGGTAAGGGCGCGGATCTGAAAACTGCCATCGCTGAGGGCATTAACAAGCGCTACAAAACTTCACCAGGACCTGGTGAAGGA]
[+] EMBL CA588891 [GACTTCGGAACCGGACCGATAGAACCTTTGCTTCGGTCGTTTTGCTCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATGGTGTCAAGCAAACGCTAGACTGCAATAAATTGATCCCCAAATGCTTC CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATAGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGATTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAG ]
[+] EMBL CA589168 [ TTCGGAACCGGACCGATAGAACCTTTGCTTCGGTCTTTTTGCTCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATAATGTCAAGCAAACGCTAGACTGCGATAAATTGATCCCCAAATGCTTCTCTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAGGGCGACAAAGACCTGAAGTGTGAGAAACTCGTGGAGACGCACTTTATCCGGCTGCAGCTCACGCACAAACCAAC ]
[+] EMBL BU807952 [ TTCGGAACCGGACCGATAGAACCTTTGCTTCGTTCTTCCTGCTCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATAATGTCAAGCAAACGCTAGACTGCGATAAATTGATCCCCTTACGTTTT CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCACGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAGGGCGACAAAGACCTGAAGTGTGAGAAACTCGTGGAGACGCACTTTATCCGGGTGCAGCTCACGCACAAACCAACGCCAGACCCGGTTAAGGCCGCGGAT ]
[+] EMBL FR0058133 [ TCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCCTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATAATGTCAAGCAAACGCTAGACTGCGATAAATTGATCCCCAAATGCTTC CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAA ]
[+] EMBL CA589320 [ TTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTTCGTTTTGGTGGATGGTGGTGTCAAGCAAACGCTAGAGTGCGATAAATTGATCCCCAAATGCTTC CTAATGAAGGCAGAGATGTATCGAGCCAGGAAGAACCTGGACACTCGTACTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAGGGCGACAAGGACCTGAAGTGTGAGAAACTCGTGGAGACGCACTTTGTCCGGCTGCAGCTCACGCACAAACCAACGCCAAACCCCGGTTAGGGCGCGGATCTGAAAACTGCCATCGCTGAGGGCATTAACAAGCGCTACAAAACTTCACCAGGACCTGGTGAAGGA]
[+] EMBL CA589416 [ GAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATGGTGTCAAGCAAACGCTAGACTGCAATAAATTGATCCCCATATTCTTC CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGATTGTGAGAATGATGGCAAATTCAGGGTCAAGCAGTGCAACAACACTGACGAGTGCTGGTGTGTCAACAGCGCCGGTGTGCGGCGAACTGACAAGGGCGACAAAGACCTGAAGTGTGAAAAACTCGTGGAGACGCACTTTATCCGGCTGCAGCTC ]
[+] EMBL CA846326 [ GAGCTTCAACTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATGGTGTCAAGCAAACGCTAGACTGCAATAAATTGATCCCCAAATGCTTC CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGA ]
[+] EMBL FR0059037 [ ACTCCGTGCTCCTGTTCTGTTTTGGCGGATGATAATGTCAAGCAAACGCTAGACTGCGATAAATTGATCCCCAAATGCTAC CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGATGGGCATCTATGACCCAGACTGGGAGAATGATGCCAAATTCAGGGGCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTTGCAACAGCGCCGGCGTGCGG ]
consensusID : consensus_2684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence
[TTTTAATCATGAAAATGCGGATTTTGCTCGTTCTCGCGCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTAAGTAGTTTCTTCCATTTTAGTTGATAAAACTGTCTTTACACCATTGAAGCGTTATTTGTAAAAGTTCAATTTCACTTTAGCTACAGTATTTTAGAGACGCTTGCAGCGCGCGCCTTTTTCGCACCTCGTTCCGCGAGCCCCACTCGCGGAATTTTCACGCCTCGTTGCTTAATAAATCCCGTGCTTTGCCGCTAATGGCGTTTTGATCGATGAGCTGCCTCCGTGTCTGTGGTTTCTGAGTTGGAAAGTGAGTAGTTGCCGGGAGGGG]
[+] EMBL FR0058707 [TTTTAATCATGAAAATGCGGATTTTGCTCGTTCTCGCGCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTAAGTAGTTTCTTCCATTTTAGTTGATAAAACTGTCTTTACACCATTGAAGCGTTATTTGTAAAAGTTCAATTTCACTTTAGCTACAGTATTTTAGAGACGCTTGCAGCGCGCGCCTTTTTCGCACCTCGTTCCGCGAGCCCCACTCGCGGAATTTTCACGCCTCGTTGCTTAATAAATCCCGTGCTTTGCCGCTAATGGCGTTTTGATCGATGAGCTGCCTCCGTGTCTGTGGTTTCTGAGTTGGAAAGTGAGTAGTTGCCGGGAGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2684#0 GCTGCTTCGGAGCCTTTACCTGTGTGCGTGCGCGCGCTTGTGTTTGTTCGTGAACGTGCG 60
consensus_2684#1 ------------------------------------------------------------
consensus_2684#2 ------------------------------------------------------------
consensus_2684#0 GCGTCCAACTTCCTGCCAAACGGGTTTGACGAGGACACACCTGCGGGAGTAAAAGGGAGC 120
consensus_2684#1 ------------------------------------------------------------
consensus_2684#2 ------------------------------------------------------------
consensus_2684#0 GCTTGGAGCTCGGACGCCATTCTTGCCCGTGTGTGACTTCGGAACCGGACCGATAGAACC 180
consensus_2684#1 ----------------------------------GACTTCGGAACCGGACCGATAGAACC 26
consensus_2684#2 ------------------------------------------------------------
consensus_2684#0 TTCGCTTCGGTCGTTTTGCTCGATTT---------TAATCATGAAAATGTGGATTGTGCT 231
consensus_2684#1 TTTGCTTCGGTCTTTTTGCTCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCT 86
consensus_2684#2 --------------------------------TTTTAATCATGAAAATGCGGATTTTGCT 28
************** ***** ****
consensus_2684#0 CGTTCTCGC-GGGCTTCGCGTTGGGAGCCTCAGCTCAGAGCTGTTCCTGTGAAACCATGA 290
consensus_2684#1 CGTTCTCGC-CAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGA 145
consensus_2684#2 CGTTCTCGCGCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTAA--GTAGTTTCTTCC 86
********* **************** *************** ** * *
consensus_2684#0 AGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTTCGTTTTGGGGGATGGTGGGGGCA 350
consensus_2684#1 AGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATGGTGTCA 205
consensus_2684#2 ATT---TTAGTTG--ATAAAACT----GTCTTTACACCATT--GAAGCGTTATTTGTAAA 135
* * * *** ** **** * * ** * * * * *
consensus_2684#0 AGCAAACGCTAGAGTGCGATAAATTGATCCCCAAATGCTTCCTAATGAAGGCAGAGATGT 410
consensus_2684#1 AGCAAACGCTAGACTGCGATAAATTGATCCCCAAATGCTTCCTAATGAAGGCAGAGATGT 265
consensus_2684#2 AGTTCAATTTCACTTTAGCTACAGTATTTTAGAGACGCTTGCAGCGCGCGCCTTTTTCGC 195
** * * * * ** * * * * * **** * * * *
consensus_2684#0 ATCGAGCCAGGAAGAACCTGGACACTCGTACTATTGGAGGAAAGCCGGTTGAGACCGCCT 470
consensus_2684#1 ATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCT 325
consensus_2684#2 ACCTCGTTCCGCGAGCCCCA--CTCGCGGAATTTTCACGCCTCGTTGCTTAATAAATCCC 253
* * * * ** * ** * * ** * * * ** * * **
consensus_2684#0 TTG--TGGACAACGATGGCATCTATGACCCA--GACTGGGAGAATGATGGCAAATTCAGG 526
consensus_2684#1 TTG--TGGACAACGATGGCATCTATGACCCA--GACTGTGAGAATGATGGCAAATTCAGG 381
consensus_2684#2 GTGCTTTGCCGCTAATGGCGTTT-TGATCGATGAGCTGCCTCCGTGTCTGTGGTTTCTGA 312
** * * * ***** * * *** * * *** ** * *** *
consensus_2684#0 GCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGGGCGGCGA 586
consensus_2684#1 GCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGA 441
consensus_2684#2 GTTGGAAAGTGAGTAGTTGCCGGGAGGGG------------------------------- 341
* **** *** * *
consensus_2684#0 ACTGACAAGGGCGACAAGGACCTGAAGTGTGAGAAACTCGTGGAGACGCA--------GA 638
consensus_2684#1 ACTGACAAGGGCGACAAAGACCTGAAGTGTGAGAAACTCGTGGAGACGCACTTTATCCGG 501
consensus_2684#2 ------------------------------------------------------------
consensus_2684#0 GAGTAGTTGATCCCGAG----------GATTGGGGCGGTGGGGCGATT------------ 676
consensus_2684#1 CTGCAGCTCACGCACAAACCAACGCCAGACCCGGGTAAGGGCGCGGATCTGAAAACTGCC 561
consensus_2684#2 ------------------------------------------------------------
consensus_2684#0 ------------------------------------------------------
consensus_2684#1 ATCGCTGAGGGCATTAACAAGCGCTACAAAACTTCACCAGGACCTGGTGAAGGA 615
consensus_2684#2 ------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |