These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1402 fasta sequence [GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTAT-ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCATTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCCATCTTTGTGCCAGCTGTGTAAGGGAGATG-GTCTGGGGCAGCACAAGTGTGAGATGAGCAACAAGGAGTTGTACTACAGCTACGAAGGAGCATTAAGGTGTTTATTCGAAGATGCCGGAGAGGTGGCCTTCATCAAACACACCACTGTTTTA-GAGAACAGCGATGGCCAGGGTCCAGCATGGGCGCAGGGACTGAAATCATCCGATTATGAACTGTTGTGTCGTGACGGCACCAGAGCTGCAGTCTCCCAGTGGAAAACCTGTCATCTGGTCCGCATCCCATTCCGAGGGACCGGGGTCCAAAATGACATCAGCCCATCTACGGGGGATAACATGCTGGAGGAGGGGCGGCAAAAGACAGAATTCAAGTTTTTTTCTTCGGAAGGATACGGAGGAGGAACTGTACTCTTCTCTGAATCGTCCACCATGTTTCAAGAAGTGGAGTCCAATGATCCCATGAAGTGGATGGGTCAGAACTATTACAACACTATGAAAGCAATGGACTGTAAAAAAGAAGATGTCCTCCGGTGGTGCGTGGTGTCCAGCGGCGAGCAGCAGAAATGTGGTGACATGGGCTCTGAATTCCAGAAGAAAGGCCTGACTCCAGCCATTAAGTGCATCTACGGCGACTCGGAGACCGACTGCATGAAAAAAATCAAGAACAATGAGGCCGATGCCATCACGCTAGATGGTGGTTACATCTACACGGCAGGCAAGGAGTACGGCCTGGTTCCTGCTACAGGCGAGAGCTACACAGAGGACCTCGATGGCTCCATCTACTATGCGATCGCTG-GGGGGAAAAAGAGGAAACAGGACATCCGTAACCTCGATGACCTGCGAAGCC] [+] EMBL CA590817 [GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTAT ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCATTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAG ] [+] EMBL CA589585 [GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTAT ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCATTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCCCCATCTTTGTGCCACCTGGGTAAa ] [+] EMBL CA589811 [GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTAT ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCGTTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCCATCTTTGTGCCAGCTGTGTAAGGGAGATG GTCTGGGGCAGCACAAGTGTGAGATGAGCAACAAGGAG ] [+] EMBL CA591623 [cACTAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTAT ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGGTGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCGTTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCCATCTTTGTGCCAGCTGTGTAAGGG ] [+] EMBL CA590108 [ ACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTATCACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCATTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGTTATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAACGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAACAACA ] [+] EMBL CA591599 [ AGGACATGGCCATGTGGAGGACAGCTGGAGCTCTCCTATAAAT ACTACAAACTGTGTTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAACTGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAGTCACAGTTGAGGGATGCATTCAAAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGTTTTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCCATCTTTGTGCCAGCTGTGTAAGGGAGATG GTCTGGGGCAGCACAAGTGTGAGATGAGCAACAAGGAGTTGTACTACAGCTACGAAGGAGCATTAAGGTGTTTATTCGAAGATGCCGGAAAGGTGGCCTTCATCAAACACACCACTGGTTTA GAGAACAGCGATGGCCAGGGTCCAGCATGGGCGCAGGGACTGAAATCATCC ] [+] EMBL FR0060030 [ ACTGTGTTTGCTCAGAGCAGGGGCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAAGCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGAATCACAGTTGAGGGATGCATTCAGAAACTAGAGAAAAAAGCAGCAGATGCTTTTTCCATGTTTGGATCTGATATCTACAAACATGG ] [+] EMBL FR0059924 [ GCAGATGCGTCTGGGGCAGCACAAGTGGGAGATGAGCAACAAGGAGTTGTACTACAGCTACGAAGGAGCATTAAGGTGTTTATTCGAAGATGCCGGAGAGGTGGCCTTCATCAAACACACCACTGTTTTAGGAGAACAGCGATGGCCAGGGTCCAGCATGGGCGCAGGGACTGAAATCATCCGATTATGAACTGTTGTGTCGTGACGGCACCAGAGCTGCAGTCTCCCAGTGGAAAACCTGTCATCTGGTCCGCATCCCATTCCGAGGGACTGGGGTCCAAAATGACATCAGCCCATCTACGGGGGATAACATGCTGGAGGAGGGGCGGCAAAAGACAGAATTCAAGTTTTTTTCTTCGGAAGGATACGGAGGAGGAACTGTACTC ] [+] EMBL CA590962 [ CCTTCATCAAACACACCACTGTTTTA GAGAACAGCGATGGCCAGGGTCCAGCATGGGCGCAGGGACTGAAATCATCCGATTATGAACTGTTGTGTCGTGACGGCACCAGAGCTGCAGTCTCCCAGTGGAAAACCTGTCATCTGGTCCGCATCCCATTCCGAGGGATCGTGGTCCAAAATGACATCAGCCCATCTACGGTGTATAACATGCTGGAGGAGGGGCGGCAAAAGACAGAATTCAAGTTTTTTTCTTCGGAAGGATACGGAGGAGGAACTGTACTCTTCTCTGAATCGTCCACCATGTTTCAAGAAGTGGAGTCCAATGATCCCATGAAGTGGATGGGTCAGAACTATTACAACACTATGAAAGCAATGGACTGTAAAAAAGAAGATGTCCTCCGGTGGTGCGTGGTGTCCAGCGGCGAGCAGCAGAAATGTGGTGACATGGGCTCTGAATTCCAGAAGAAAGGCCTGACTCCAGCCATTAAGTGCATCTACGGCGACTCGGAGACCGACTGCATGAAAAAAATCAAGAACAATGAGGCCGATGCCATCACGCTAGATGGTGGTTACATCTACACGGCAGGCAAGGAGTACGGCCTGGTTCCTGCTACAGGCGAGAGCTACACAGAG ] [+] EMBL FR0059895 [ ATGAAGTGGATGGGTCAGAACTATTACAACACTATGAAAGCAATGGACTGTAAAAAAGAAGATGTCCTCCGGTGGTGCGTGGTGTCCAGCGGCGAGCAGCAGAAATGTGGTGACATGGGCTCTGAATTCCAGAAGAAAGGCCTGACTCCAGCCATTAAGTGCATCTACGGCGACTCGGAGACCGACTGCATGAAAAAAATCAAGAACAATGAGGCCGATGCCATCACGCTAGATGGTGGGTACATCTACACGGCAGGCAAGGAGTACGGCCTGGTTCCTGCTACAGGCGAGAGCTACACAGAGGACCTCGATGGCTCCATCTACTATGCGATCGCTGTGGGGGAAAAAGAGTAAACCAGACATCC ] [+] EMBL FR0059319 [ TGGACTGTAAAAAAGAAGATGTCCTCCGGTGGTGCGTGGTGTCCAGCGGCGAGCAGCAGAAAGGTGGTGACATGGGCTCTGAATTCCAGAAGAAAGGCCTGACTCCAGCCATTAAGTGCATCTACGGCGACTCGGAGACCGACTGCATGAAAAAAATCAAGAACAATGAGGCCGATGCCATCACGCTAGATGGTGGTTACATCTACACGGCAGGCAAGGAGTACGGCCTGGGTCCTGCTACAGGCGAGAGCTACACAGAGGACCTCGATGGCTCCATCTACTATGCGATCGCTG GGGGGAAAAAGAGGAACCAGGACATCCGTAACCTCGATGACCTGCGAAGCC] consensusID : consensus_2685#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTATACTACAAACTGAAAAAAGCAGCAGATGCTTCTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCC] [+] EMBL CA589739 [GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTATACTACAAACTGAAAAAAGCAGCAGATGCTTCTTTCCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCAGTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAGCAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAGGCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTGTGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAGGAGCAACAGCGCAGGGCGACCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2685#0 GACAAGGACATGGCCATGTGGAGGACAGCTGGAGCTCTGCTTCTTATACTACAAACTGTG 60 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 TTTGCTCAGAGCAGCATCAGATGGTGCACCATCTCAGATGCAGAGCACAGGAAATGTGAA 120 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 GCGATGTCCCAGGCTTTGGCTGAAGCCTCCATCCGTCCTTCCGTCAGCTGTGTCAGCGGA 180 consensus_2685#1 ---------------------------------------GACAAGGACATGGCCATGTGG 21 * * * ** * consensus_2685#0 GTCACAGTTGAGGGATGCATTCAAAAACTAGA----GAAAAAAGCAGCAGATGCTT-TTT 235 consensus_2685#1 AGGACAGCTGGAGCTCTGCTTCTTATACTACAAACTGAAAAAAGCAGCAGATGCTTCTTT 81 **** ** * *** * **** * ******************** *** consensus_2685#0 CCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCA 295 consensus_2685#1 CCATGTTTGGATCTGATATCTACAAACATGGGAAAATGAATTCCATCCAGGTCGCTGCCA 141 ************************************************************ consensus_2685#0 GTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAG 355 consensus_2685#1 GTGAATCAAAGAGTGACGGTACGGGCGCATCTTACTATGCGGTTGCTGTGGTGAAGAAAG 201 ************************************************************ consensus_2685#0 CAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAG 415 consensus_2685#1 CAAATCAAGGCATCACCGTCAAGAACCTGGCAGGAAAAAAGAGCTGTCACACCGGTAAAG 261 ************************************************************ consensus_2685#0 GCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTG 475 consensus_2685#1 GCCGAACAGCTGGCTGGAATATGCCCATAGGATACCTCATGGACCAAGGCTACATGTCTG 321 ************************************************************ consensus_2685#0 TGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAG 535 consensus_2685#1 TGATGGGCTGCAACATCCCAGAGGGAGTGGCAAATTTCTTCAGTGCCAGCTGCGTGCCAG 381 ************************************************************ consensus_2685#0 GAGCAACAGCGCAGGGCGACCCTCCATCTTTGTGCCAGCTGTGTAAGGGAGATGGTCTGG 595 consensus_2685#1 GAGCAACAGCGCAGGGCGACCCTCC----------------------------------- 406 ************************* consensus_2685#0 GGCAGCACAAGTGTGAGATGAGCAACAAGGAGTTGTACTACAGCTACGAAGGAGCATTAA 655 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 GGTGTTTATTCGAAGATGCCGGAGAGGTGGCCTTCATCAAACACACCACTGTTTTAGAGA 715 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 ACAGCGATGGCCAGGGTCCAGCATGGGCGCAGGGACTGAAATCATCCGATTATGAACTGT 775 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 TGTGTCGTGACGGCACCAGAGCTGCAGTCTCCCAGTGGAAAACCTGTCATCTGGTCCGCA 835 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 TCCCATTCCGAGGGACCGGGGTCCAAAATGACATCAGCCCATCTACGGGGGATAACATGC 895 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 TGGAGGAGGGGCGGCAAAAGACAGAATTCAAGTTTTTTTCTTCGGAAGGATACGGAGGAG 955 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 GAACTGTACTCTTCTCTGAATCGTCCACCATGTTTCAAGAAGTGGAGTCCAATGATCCCA 1015 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 TGAAGTGGATGGGTCAGAACTATTACAACACTATGAAAGCAATGGACTGTAAAAAAGAAG 1075 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 ATGTCCTCCGGTGGTGCGTGGTGTCCAGCGGCGAGCAGCAGAAATGTGGTGACATGGGCT 1135 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 CTGAATTCCAGAAGAAAGGCCTGACTCCAGCCATTAAGTGCATCTACGGCGACTCGGAGA 1195 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 CCGACTGCATGAAAAAAATCAAGAACAATGAGGCCGATGCCATCACGCTAGATGGTGGTT 1255 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 ACATCTACACGGCAGGCAAGGAGTACGGCCTGGTTCCTGCTACAGGCGAGAGCTACACAG 1315 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 AGGACCTCGATGGCTCCATCTACTATGCGATCGCTGGGGGGAAAAAGAGGAAACAGGACA 1375 consensus_2685#1 ------------------------------------------------------------ consensus_2685#0 TCCGTAACCTCGATGACCTGCGAAGCC 1402 consensus_2685#1 --------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |