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Takifugu rubripes
cluster # 2686 cluster # 2686       Sequences # 12       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2686#0 length = 652 sequences # 8  
 consensus_2686#1 length = 631 sequences # 4  
consensusID : consensus_2686#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 652
fasta sequence 
                              [AGGCTGTCGCACTTCCGTCAGAT-GCCAGTGGATCGCCAGTGGAACCAGCAGAGGTCCGGAACCACCGCCTTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCA-GGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACA-TGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGAGATCCAGCAGGACGTGACCCCGCTCCAGATCGTGTATCCGGACACGGCGCTGCGTCTCCAGGCACTGCTGGACTTCCAGGAAGAGGGTGGCGAGAAGAGGGTCGCTGGAGACGAGTGGCTGTTTGAAGGACCAGGGACCTACATCCCCAGGAAGGAGGTGGTCGTCCTGGAGACCATCAAAGCTACCGTCATCCGAGAGAACCAGGCCATCAGGCTGAGGGCC]

[+] EMBL CA332792             [AGGCTGTCGCACTTCCGTCAGATCGCCAGTGGATCGCCAGTGGAACCAGCAGAGGTCCGGAACCACCGCCTTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCA GGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACA TGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGAGATCCAGCAGGACGTGACCCCGCTCCAGATCGTGTATCCGGACACGGCGCTGCGTCTCCAGGCACTGCTGGACTTCCAGGAAGAGGGTGGCGAGAAGAGGGTCGCTGGAGACGAGTGGCTGTTTGAAAGACCAGGGACCTACATCCCCAGCAAGGAG                                                                  ]
[+] EMBL BU805781             [                        GCCAGTGGATCGCCAGTGGAACCAGCAGAGGTCCGGAACCACCGCCTTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCA GGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACA TGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGAG                                                                                                                                                                                                                              ]
[+] EMBL CA590022             [                         CCAGTGGATCGCCAGTGGAACCAGCAGAGGTCCGGAACCACCGCCTTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAGCACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCA GGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACA TGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGAGATCCAGCAGGACGTGACCCCGCTCCAGATCGTGTATCCGGACACGGCGCTGCGTCTCCAGGCACTGCTGGACTTCCAGGAAGAGGGTGGCGAGAAGAGGGTCGCTGGAGACGAGTGGCTGTTTGAAGGACCAGGGACCTACATCCCCAGGAAGGAGGTGGTCGTCCTGGAGACCATCAAAGCTACCGTCATCCGAGAGAACCAGGCCATCAGGCTGAGGGCC]
[+] EMBL BU806633             [                         CCAGTGGATCGCCAGTGGAACCAGCAGAGGTCCGGAACCACCGCCTTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCA GGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACA TGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGAGATCCAGCAGGACGTGACCCCGCTCCAGATCGTGTATCCGGACACGGCGCTGCGTCTCCAGGCACTGCTGGACTTCCAGGAAGAGGGTGGCGAGAAGAGGGTCGCTGGAGACGAGTGGCTGTTTGAAGGACCAGGGACCTACATCCCCAGGAAGGAGGTGGTCGTCCTGGAGACCATCAAAGCTACCGTCATCCGAGAGAACCAGGCCATCAGGCTG      ]
[+] EMBL BU807662             [                              GGATCGCCAGTGGAACCAGCAGAGGTCCGGAACCACCGCCTTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCA GGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACA TGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGAGATCCAGCAGGACGTGACCCCGCTCCAGATCGTGTATCCGGACACGGCGCTGCGTCTCCAGGCACTGCTGGACTTCCAGGAAGAGGGTGGCGAGAAGAGGGTCGCTGGAGACGAGTGGCTGTTTGAAGGACCAGGGACCTACATCCCCAGGAAGGAGGTGGTCGTCCTGGAGACCATCAAAGCTACCGTCATCCGAGAGAACCAGGCCATCAGGCTG      ]
[+] EMBL CA333115             [                                   GCCAGTGGAACCAGCAGAGGTCCGGAACCACCGCCTTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCA GGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACA TGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGAGATCCAGCAGGACGTGACCCCGCTCCAGATCGTGTATCCGGACAAAGCGCTGCGTCTCCAGGCACTGCTGGACTTCCACAAA                                                                                                                                             ]
[+] EMBL FR0061264            [                                                         CGGAACCACCGCCTGGTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTTTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCA GGGCCTTTTTGACCAGTCGGGACAGGCCAAGCTCCGACATTGCTGACCTGGAGATTCGCCTGACCCCAGA                                                                                                                                                                                                                                                          ]
[+] EMBL FR0061268            [                                                          GGAACCACCGGCGTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCATGGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACA TGCTGACCTGGAGATCCGTCTGA                                                                                                                                                                                                                                                                 ]




>consensus_2686#0
AGGCTGTCGCACTTCCGTCAGATGCCAGTGGATCGCCAGTGGAACCAGCAGAGGTCCGGA
ACCACCGCCTTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGT
TCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCA
GAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGA
GAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCAT
CCTCAACCCGGTGGCCCGGGACGCGGAGGGCCAGGTCCTCTTTGACCAGTCGGGACAGGC
CAAGCTCCGACATGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCC
TGGAGAGGAGATCCAGCAGGACGTGACCCCGCTCCAGATCGTGTATCCGGACACGGCGCT
GCGTCTCCAGGCACTGCTGGACTTCCAGGAAGAGGGTGGCGAGAAGAGGGTCGCTGGAGA
CGAGTGGCTGTTTGAAGGACCAGGGACCTACATCCCCAGGAAGGAGGTGGTCGTCCTGGA
GACCATCAAAGCTACCGTCATCCGAGAGAACCAGGCCATCAGGCTGAGGGCC

consensusID : consensus_2686#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 631
fasta sequence 
                              [CAGTGGATCGCCAGTGGAACCAGCAGAGGTCCGGAACCAGTGGAATCACCTTTGTAGTTTCACACTGACGCCGTCACTTCCTGGAAGATCCTGGAACCACAGAAGAGGAAGTCTGGTTCTGGTTCTGGTTCTGGTTGGAATCAGAACCTCTCCATTGTTCGAGAAGTCTGGAGCGACGACGCGTATCTGATCAGCTGGGTTAGAAATCAATAAGCAACCAGTCAGACAGCAGCCGCCGCCTTTTCCCATCATGGCCAAGAAAAGTGGGGGCCGGAGC-AGTGAGAGCGACGTTCCCACCGAGGTGACGATCATCCGCATCCCTCCTCATCACTACATCCACGTT-CTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCAGGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACATGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGAGATCCAGCAGGACGTGACCCCGCTTCAGATC]

[+] EMBL CA589523             [CAGTGGATCGCCAGTGGAACCAGCAGAGGTCCGGAACCAGTGGAATCACCTTTGTAGTTTCACACTGACGCCGTCACTTCCTGGAAGATCCTGGAACCACAGAAGAGGAAGTCTGGTTCTGGTTCTGGTTCTGGTTGGAATCAGAACCTCTCCATTGTTCGAGAAGTCTGGAGCGACGACGCGTATCTGATCAGCTGGGTTAGAAATCAATAAGCAACCAGTCAGACAGCAGCCGCCGCCTTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGC AATGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTT CTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCAGGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACATGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGAGATCCAGCAGGACGTGACCCCGCTTCAGATC]
[+] EMBL FR0062088            [                                                                                                                                                                                                                                                           TGGCCAAGAAAAGTGGGCGGCCGAGT AGGGAGAGCGACGTTCCCACCGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTT CTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCCGGTGGCCCGGGACGCGGAGGGCCAGTGCCTCTTTGACCAGTTGGGACAGGCCATGCTCCGACAT                                                                                       ]
[+] EMBL FR0061317            [                                                                                                                                                                                                                                                                              CCGGAGCGTTTGATAGCGACGTTCCCACCGAGGCGACGATCACCCGCATTCCTCCTTATCACTACATCCACGTT CTGGACCAGAACACCAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACTGGACAACGAGAGAGTTCTCTTCTCTCCGTTCCACATGATCATGGT                                                                                                                                                                                        ]
[+] EMBL FR0063898            [                                                                                                                                                                                                                                                                                               GACGGTCCCACCGAGGGGACGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCCTGAACCAGAACACCAACATCGCCCGCATCGAGGTCGAACCCCTCACCTACATCCGACAGGACAACGAGAGAGGTCTCTTCTCTCCGTTCCACATGAGCATGGGGCCGCCGCG CACTACTGCGTCATCCTCAACCCGGGGGCCCGGGACGCGGAGGGCCAGGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCGACATGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGAGATCCAGC                       ]




>consensus_2686#1
CAGTGGATCGCCAGTGGAACCAGCAGAGGTCCGGAACCAGTGGAATCACCTTTGTAGTTT
CACACTGACGCCGTCACTTCCTGGAAGATCCTGGAACCACAGAAGAGGAAGTCTGGTTCT
GGTTCTGGTTCTGGTTGGAATCAGAACCTCTCCATTGTTCGAGAAGTCTGGAGCGACGAC
GCGTATCTGATCAGCTGGGTTAGAAATCAATAAGCAACCAGTCAGACAGCAGCCGCCGCC
TTTTCCCATCATGGCCAAGAAAAGTGGGGGCCGGAGCAGTGAGAGCGACGTTCCCACCGA
GGTGACGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACACCAA
CATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGTTCT
CTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAACCC
GGTGGCCCGGGACGCGGAGGGCCAGGTCCTCTTTGACCAGTCGGGACAGGCCAAGCTCCG
ACATGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGAGGA
GATCCAGCAGGACGTGACCCCGCTTCAGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2686#0      ------------------------------------------------------------
consensus_2686#1      CAGTGGATCGCCAGTGGAACCAGCAGAGGTCCGGAACCAGTGGAATCACCTTTGTAGTTT 60
                                                                                  

consensus_2686#0      ------------------------------------------------------------
consensus_2686#1      CACACTGACGCCGTCACTTCCTGGAAGATCCTGGAACCACAGAAGAGGAAGTCTGGTTCT 120
                                                                                  

consensus_2686#0      ----------------------------------------------------AGGCTGTC 8
consensus_2686#1      GGTTCTGGTTCTGGTTGGAATCAGAACCTCTCCATTGTTCGAGAAGTCTGGAGCGACGAC 180
                                                                            *  * *

consensus_2686#0      GCACTTCCG-TCAGATGCCAGTGGATCGCCAGTGGAACCAGCAGA-GGTCCGGAACCACC 66
consensus_2686#1      GCGTATCTGATCAGCTG--GGTTAGAAATCAATA-AGCAACCAGTCAGACAGCAGCCGCC 237
                      **   ** * **** **   **       ** *  * * * ***   * * * * ** **

consensus_2686#0      GCCTTTTCCCATCATGTCCAAGAAAAGTGCCGCCCGCAGCAATGAGAGCGACGTTCCCAC 126
consensus_2686#1      GCCTTTTCCCATCATGGCCAAGAAAAGTGGGGGCCGGAGCAGTGAGAGCGACGTTCCCAC 297
                      **************** ************  * *** **** ******************

consensus_2686#0      CGAGGTGTCGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACAC 186
consensus_2686#1      CGAGGTGACGATCATCCGCATCCCTCCTCATCACTACATCCACGTTCTGGACCAGAACAC 357
                      ******* ****************************************************

consensus_2686#0      CAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGT 246
consensus_2686#1      CAACATCGCCCGCATCGAGGTCGGACCCCTCACCTACATCCGACAGGACAACGAGAGAGT 417
                      ************************************************************

consensus_2686#0      TCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAA 306
consensus_2686#1      TCTCTTCTCTCCGTTCCACATGATCATGGTGCCGCCGCGTCACTACTGCGTCATCCTCAA 477
                      ************************************************************

consensus_2686#0      CCCGGTGGCCCGGGACGCGGAGGGCCAGGTCCTCTTTGACCAGTCGGGACAGGCCAAGCT 366
consensus_2686#1      CCCGGTGGCCCGGGACGCGGAGGGCCAGGTCCTCTTTGACCAGTCGGGACAGGCCAAGCT 537
                      ************************************************************

consensus_2686#0      CCGACATGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGA 426
consensus_2686#1      CCGACATGCTGACCTGGAGATCCGCCTGACCCAGGACCCCTTCCCACTGTATCCTGGAGA 597
                      ************************************************************

consensus_2686#0      GGAGATCCAGCAGGACGTGACCCCGCTCCAGATCGTGTATCCGGACACGGCGCTGCGTCT 486
consensus_2686#1      GGAGATCCAGCAGGACGTGACCCCGCTTCAGATC-------------------------- 631
                      *************************** ******                          

consensus_2686#0      CCAGGCACTGCTGGACTTCCAGGAAGAGGGTGGCGAGAAGAGGGTCGCTGGAGACGAGTG 546
consensus_2686#1      ------------------------------------------------------------
                                                                                  

consensus_2686#0      GCTGTTTGAAGGACCAGGGACCTACATCCCCAGGAAGGAGGTGGTCGTCCTGGAGACCAT 606
consensus_2686#1      ------------------------------------------------------------
                                                                                  

consensus_2686#0      CAAAGCTACCGTCATCCGAGAGAACCAGGCCATCAGGCTGAGGGCC 652
consensus_2686#1      ----------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)