These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 762 fasta sequence [AGCTTCACAGCAGGATGTCTTCATCATCTCTCAGAGTCTTCCTCCTCTTCATCAGCCTGTACACGGCAGGTGGATTTCAACTTTATTCGGTGGATAGCTGTGATTTTAACTCCACCGATCTGAAGGACATCGAGTTTTCCAGATCACTTTACTACAACAAACTGATGCTTGTCCGCTTCAGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATACGGATTACGTGAGGCGGACGGCTGGAATAATCAGAGTTCATATCTGGAGCAGATGAGGGATGAGAAGGAGCGATACTGTGAGCACAATATAAAGATCGGGTA--CAGCAACATTCTGTCAAAGTCCGTTGAGCCCACTGTTCGAGTGCACTCGGTGGTGCCCCCTGCTGGAGGACATCCCGCCATGTTGGTCTGCAGCGTCTACGACTTCTACCCCAGATACATCAAAGTGAGCTGGCAGAGAGATGGAAAAGAGGTCAGCCAGGATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTCTACCAGCTGCACTCTCACCTGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCCAGCCTGAAAACCCCTTTGGTCAAAGACTGGGACCCATCCATGCCTGAATCTGAGAGGAACCAGATCGCCATCGGAGCATCAGGCCTGATCCTGGGTCTGATCTTGTCTCTGGCTGGATTCATCTACTTCAAGAGAAAATCTCGAGGGAGGATCCTGGTTCCCAATAACT] [+] EMBL BU806271 [AGCTTCACAGCAGGATGTCTTCATCATCTCTCAGAGTCTTCCTCCTCTTCATCAGCCTGTACACGGCAGGTGGATTCCAAAGTTATTCGGTGGATAGCTGTGATTTTAACTCCACCGATCTGAAGGACATCGAATATTCCAGATCACTTTACTACAGCAGAGTGATGTATGCCCGCTTCAGCAGCCGCGTGGGGAAGTTTGAGGGATACACGAAATACGGATTGCATCAGGCGGATTACTGGAATAATCAGAGTTCAATTCTGGAGCAGATGAGGGATGAGAAGGAGCGATACTGTCAGTACAATATAAAGATCTGGTA CAGCAACATTCTGTCAAAGTCCGTGGAACCAGAGGTCATTGTGCACTCGGTGGCGCCCCCTGCTGGAGGACATCCCGCCATGTTGGTCTGCAGCGTCTACGACTTCTACCCCAAATACATCAAAGTGAGCTGGCTCAGAGATGGAGAAGAGGTCAGCCAGGATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTCTACCAGCTGCACTCTCACCTGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCCAGCCTGAAAACCCGTTTGACCAAAGACTGGGACCCATCCATGCCT ] [+] EMBL CA846190 [cGCTTCACAGCAGGATGTCTTCATCATCTCTCAGAGTCTTCCTCCTCTTCATCAGCCTGTACACGGCAGGTGGATTTCAATATTATGTGGTGTCTCGCTGTAGTTTTAACTCCACCGATCTGAAGGACATCGAATATTCCAGATCAGTTTACTACAACAAACTGATGTATGCCCGCTTCAGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATACGGATTATTCCAGGCGGATTACTGGAATAATCAGAGTTCAATTCTGGAGCAGGTGAGGGATAATAAGGAGCGATACTGTCAGCACAATATAAAGAACTGGTA CAGCAACATTCTGTCAAAGTCCGTGGAGCCAGAGGTCATTGTGCACTCGGTGGTGCCCCCTGCTGGAGGACATCCCGCCATGTTGGTCTGCAGCGTCTACGACTTCTACCCCAGATACATCAAAGTGAGCTGGCAGAGAGATGGAGAAGAGGTCAGCCAGGATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTCTACCAGCTGCACTCTCACCTGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCCAGCCTGAAAACCCCTTTGGTCAAAGACTGGGACCCATCCATGCCTGAATCTGAGAGGAACCAGATCGCCATCGGAGCATCAGGCCTGATCCTGGGTCTGATCTTGTCTCTGGCTGGATTCATCTACTTCAAGAGAAAATCTCGAGGGAGGATCCTGGTTCCCAATAACT] [+] EMBL CA588268 [ CTTTA AGCAGGATGTCTTCATCATCTCTCAGAGTCTTCCTCCTTATCATCAGCCTGTACACGGCAGGTGGATTTCAACTTTATTCGGTGGATAGCTGTGATTTTAACTCCACCGATCTGAAGGACATCGAGTTTTCCAGATCACTTTACTACAACAAACTGATGCTTGTCCGCTTCAGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATTCGGATTACGTGTGGCGGACGGCTGGAATAATCAGAGTTCATATCTGGAGCAGATGAGGACTGCGAAGGAGCGATACTGTGAGCACAATATAAAGATCGATTA CAGCAACATTCTGTCAAAGTCCGTTGATCCCACTGTTCGAGTGCACTCGGTGGTGCCCCCTGCTGGAGGACATCCCGCCATGTTGGTCTGCAGCGTCTACGACTTCTACCCCAGATACATCAAAGTGAGCTGGCAGAGAGATGGAAAAGAGGTCAGCCAGGATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTCTACCAGCTGCACTCTCACCTGGGGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCCAGCCTGAAAACCCCTTTGGTCAAAGACTGGGACCCATCCATGCCTGAATCTGAGAGGAACCAGATCGCCATCGGAGCATCAGGCCTGATCCTGGGTCTGATCTCGTCTCTGGCTGGATTCATCTACTTCAAGAGAAAATCTCGAGGGAGGATC ] [+] EMBL CA588440 [ acccttCAGGAGGATGTCTTCATCATCTCTCAGAGTCTTCCTCC CTTAATAAGCCTGTACACGGCAGGTGGATTTCAACTTTATTCGGTGGATAGCTGTGATTTTAACTCCACCGATCTGCAGGACATCGAGTTTTCCAGATCACTTTACTACAACAAACTGATGCTTGTCCGCTTCAGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATTCGGATTACGTGTGGCGGACGGCTGGAATAATCAGAGTTCATATCTGGAGCAGATGAGGACTGCGAAGGAGCGATACTGTGAGCACAATATAAAGATCGATTA CAGCAACATTCTGTCAAAGTCCGTTGAGTTTTCTGTTCGAGTGCACTCGGTGGTGCCCCCTGCTGGAGGACATCCCGCCATGTTGGTCTGCAGCGTCTACGACTTCTACCCCAGATACATCAAAGTGAGCTGGCAGAGAGATGGAAAAAAGGTCAGCCAGGATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTCTACCAGCTGCACTCTCACCTGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCCAGCCTGAAAACCCCTTTGGTCAAAGACTGGGACCCATCCATGCCTGAATCTGAGAGGAACCAGATCGCCATCGGAGCATCAGGCCTGATCCTGGGTCTGATCTTGTCTCTGGCTGGATTCATCTACTTCAAGAGAAAATCTCGAGGGAGGATC ] [+] EMBL CA846655 [ TCAGAGTCTTCCTCCTCTTCATCAGCCTGTACACGGCAGGTGGATTTCAACTTTATTGGGTGGATCGCTGTGATTTTAACTCCACCGATCTGAAGGACATCGAATATTCCAGATCAGTTTACTACCACAAAGTGATGTTTGCCCGCTTCCGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAAGACGGATTGCATCAGGCGGACGGCTGGAATAATATGACTTCATATCTGGAGCAGATGAGGGATCAGAAGGAGCGATACTGTGAGCCCAATATAAAGGTCTGGTA CAGCAACATTCTGTCAAAGTCCGTTGAGCCCACTGTTCGAGTGCACTCGGTGGTGCCCCCTGCTGGAGGACATCCCGCCGTGTTGGTCTGCAGCGTCTACGACTTCTACCCCAAATACATCAAAGTGAGCTGGCTCAGAGATGGAAAAGAGGTCAGCCAGGATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTCTACCAGCTGCACTCTCACCTGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCCAGCCTGAAAACCCGTTTGGTCAAAGACTGGGACCCATCCATGCCTGAATCT ] [+] EMBL FR0058748 [ TCAGAGTCTTCCTCCTCTTCATCAGCCTGTACACGGCAGGTGGATTTCAACTTTATGGGGTGGATAGCTGTGATTTTAACTCCACCGATCTGAAGGACATCGAGTTTTCCAGATCACTTTACTACAACAAACTGATGCTTGTCCGCTTCAGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATTCGGATTACGTGTGGCGGACGGCTGGAATAATCAGAGTTCATATCTGGAGCAGATGAGGACTGCGAAGGAGCGATACTGTGAGCACAATATAAAGATCGATTA CAGCAACATTCTGTCAAAGTCCGTTGAGCCCACTGTCCGAGTGCACTCGGTGGGGCCCC ] [+] EMBL CA591141 [ CCTCCTCTTCATCAGCCTGTACACGGCAGGTGGATTTCAACTTTATTCGGTGGATAGCTGTGATTTTAACTCCACCGATCTGAAGGACATCGAGTTTTCCAGATCACTTTACTACAACAAACTGATGCTTGTCCGCTTCAGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATTCGGATTACGTGTGGCGGACGGCTGGAATAATCAGAGTTCATATCTGGAGCAGATGAGGACTGCGAAGGAGCGATACTGTGAGCACAATATAAAGATCGATTA CAGCAACATTCTGTCAAAGTCCGTTGAGCCCACTGTTCGGGTGCACTCGGTGGTGCCCCCTGCTGGAGGACATCCCGCCATGTTGGTCTGCAGCGTCTACGACTTCTACCCCAGATACATCAAAGTGAGCTGGCAGAGAGATGGAAAAGAGGTCAGCCAGGATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTCTACCAGCTGCACTCTCACCTGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCCAGCCTGAAAACCCCTTTGGTCTAAGACTGGGACC ] [+] EMBL FR0058402 [ CTCTTCATCAGCCTGTACACGGCAGGTGGATTTCAACTTTATTCGGTGGATAGCTGTGATTTTAACTCCACCGATCTGAAGGACATCGAGTTTTCCAGATCACTTTACTACAACAAACTGATGCTTGTCCGCTTCAGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATTCGGATTACGTGTGGCGGACGGCTGGAATAATCAGAGTTCATATCTGGAGCAGATGAGGACTGCGAAGGAGCGATACTGTGAGCACAATATAAAGATCGATTA CAGCAACATTCTGTCAAAGTCCGTTGAGCCCACTGTCCGAGTGCACTCGGTGGTGCCCCCTGCTGGAGGACATCCCGCCATGTTGGTCTGCAGCGTCTACGACTTCTACCCCAGATACATCAAAGTGAGCTGGCAAAGAGATGGAAAAGAGGTCAGCCAGGATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTC ] [+] EMBL FR0062970 [ CGGCAGGTGGATTTCAATATTATTGGGGGTCTCGCTGTAGGTTTAACTCCACCGATCTGAAGGACATCGAGTTCACCAGATCACTTTACTACCACAAAGTGATGTTTGCCCGCTTCCGCAGCAGCGTGGGGAAGTTTGAGGGATTCACGAAAGACGGAATGCATCAGGCGGACGGCTGGAATAATCAGAGTTCATTTATGGAGCAGATGAGGGATGAGAAGGAGCGATACTGTGAGCACAATATAAAGATCTGGTA CAGCAACATTCTGTCAGAGGCCGTTGAGCCCA ] [+] EMBL CA844799 [ TTAACTCCACCGATCTGAAGGACATCGAATATTCCAGATCACATTACTACAACAAACTGATGTATGTCCGCTTCCGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAAGACGGATTGATTCAGGCGGATTACTGGAATAATATCAGTTCATATCTGGAGCAGATGAGGGATGAGAAGGAGCGATACTGTGAGCCCAATATAAAGGTCTGGTATCTTTTTACATTCTGTCAAAGTCCGTTGAGCCCACTGTTCGAGTGCACTCGGTGGTGCCCCCTGCTGGAGGACATCCCGCCGTGTTGGTCTGCAGCGTCTACGACTTCTACCCCAGATACATCAAAGTGAGCTGGCAGAGAGATGGAGAAGAGGTCAGCCAGGATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTCTACCAGCTGCACTCTCACCTGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCC ] [+] EMBL CA846850 [ GCACTCGGTGGTGCCCCCTGCTGGAGGACATTCCGCCGCGTTGGTCTGCAGCGTCTACGACTTCTACCCCAGATACATCAAAGTGAGCTGGCAGAGAGATGGAGAAGAGGTCAGCCAGGATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTCTACCAGCTGCACTCTCACCTGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCCAGCCTGATTACCCGTTTGGTCAAAGACTGGGACCCATCCATGCCTGAATCTGAGAGGAACCAGATCGCCCTCGGAGCATCAGGCCTGATCCTGGGCCTGATCTTGTCTCGGGCTGGATTCATCTAC ] consensusID : consensus_2691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [GTGGGGTTCAATATTATGTGGTGTCTCGCTGTAGTTTTAACTCCACCGATCTGAAGGACATCGAATATTCCAGATCAGGTTACTACAACAAACTGATGTATGCCCGCTTCAGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATACGGATTATTCCAGGCGGATTACTGGAATAATCAGAGTTCAATTCTGGAGCAGATGAGGGATAATAAGGAGC] [+] EMBL FR0061315 [GTGGGGTTCAATATTATGTGGTGTCTCGCTGTAGTTTTAACTCCACCGATCTGAAGGACATCGAATATTCCAGATCAGGTTACTACAACAAACTGATGTATGCCCGCTTCAGCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATACGGATTATTCCAGGCGGATTACTGGAATAATCAGAGTTCAATTCTGGAGCAGATGAGGGATAATAAGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2691#0 AGCTTCACAGCAGGATGTCTTCATCATCTCTCAGAGTCTTCCTCCTCTTCATCAGCCTGT 60 consensus_2691#1 ------------------------------------------------------------ consensus_2691#0 ACACGGCAGGTGGATTTCAACTTTATTCGGTGGATAGCTGTGATTTTAACTCCACCGATC 120 consensus_2691#1 ---------GTGGGGTTCAATATTATGTGGTGTCTCGCTGTAGTTTTAACTCCACCGATC 51 **** ***** **** **** * ***** ***************** consensus_2691#0 TGAAGGACATCGAGTTTTCCAGATCACTTTACTACAACAAACTGATGCTTGTCCGCTTCA 180 consensus_2691#1 TGAAGGACATCGAATATTCCAGATCAGGTTACTACAACAAACTGATGTATGCCCGCTTCA 111 ************* * ********** ******************* ** ******** consensus_2691#0 GCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATACGGATTACGTGAGGCGGACGGCT 240 consensus_2691#1 GCAGCAGCGTGGGGAAGTTTGAGGGATACACGAAATACGGATTATTCCAGGCGGATTACT 171 ******************************************** ******* ** consensus_2691#0 GGAATAATCAGAGTTCATATCTGGAGCAGATGAGGGATGAGAAGGAGCGATACTGTGAGC 300 consensus_2691#1 GGAATAATCAGAGTTCAATTCTGGAGCAGATGAGGGATAATAAGGAGC------------ 219 ***************** ******************* * ******* consensus_2691#0 ACAATATAAAGATCGGGTACAGCAACATTCTGTCAAAGTCCGTTGAGCCCACTGTTCGAG 360 consensus_2691#1 ------------------------------------------------------------ consensus_2691#0 TGCACTCGGTGGTGCCCCCTGCTGGAGGACATCCCGCCATGTTGGTCTGCAGCGTCTACG 420 consensus_2691#1 ------------------------------------------------------------ consensus_2691#0 ACTTCTACCCCAGATACATCAAAGTGAGCTGGCAGAGAGATGGAAAAGAGGTCAGCCAGG 480 consensus_2691#1 ------------------------------------------------------------ consensus_2691#0 ATGTGACCTCCACGGACGAGCTGGCGGACGGCGACTGGTTCTACCAGCTGCACTCTCACC 540 consensus_2691#1 ------------------------------------------------------------ consensus_2691#0 TGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTGTGGTGGAGCACGCCAGCCTGA 600 consensus_2691#1 ------------------------------------------------------------ consensus_2691#0 AAACCCCTTTGGTCAAAGACTGGGACCCATCCATGCCTGAATCTGAGAGGAACCAGATCG 660 consensus_2691#1 ------------------------------------------------------------ consensus_2691#0 CCATCGGAGCATCAGGCCTGATCCTGGGTCTGATCTTGTCTCTGGCTGGATTCATCTACT 720 consensus_2691#1 ------------------------------------------------------------ consensus_2691#0 TCAAGAGAAAATCTCGAGGGAGGATCCTGGTTCCCAATAACT 762 consensus_2691#1 ------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |