These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1112 fasta sequence [TTGGCTCCGGGCTCCTTCTTAAGGAGACAAAAAGACTGCAAGATGGGTTTTGTGAAAGTGGTGAAGAACAAGGCCTACTTCAAGAGGTACCAGGTCAAATTCAGGAGGAGGAGAGAGGGAAAGACTGACTACTTTGCTCGCAAGCGCCTTGTCGTACAGGATAAGAACAAGTACAACACACCCAAGTACCGGATGATTGTCCGTTTCTCCAACCGGGACATCGTCTGCCAGATTGCCTATGCCAAGATCGAGGGTGACATGATCGTGTGTGCGGCCTATTCACACGAGCTGCCAAAATACGGCGTCTCCGTGGGCTTGACAAATTACGCAGCAGCCTATTGCACCGGTTTGCTGCTGGCTCGCCGACTGCTGAACAAGTTTGGCCT-GGATAAGGTGTATGAAGGCCAGGTTGAGGTGACCGGTGAGGAATTCAATGTGGAGAGCATTGATGGTCAGCCAGGTGCTTTTACCTGCTATCTGGACGCTGGACTTGCAAGAACCACCACAGGCAACAAAGTATTTGGTGCAGTTAAGGGAGCTGTGGATGGAGGCCTGTCCATCCCACACAGCACAAAGCGTTTCCCCGGATACGACCCTGAGAGCAAGGAGTTTAACGCCGAGGCCCATCGCAAACACATCATGGGTATCAACGTGTCCGAGTACATGAGCTACCTGATGGAGGAGGACGAGGACACGTACAAAAAGCAATTCTCCCGCTTCATCAAGAATGGAGTAACTCCTGATATGATTGAAGAAATGTACAAAAAGGCTCATGCCTCCATTCGTGAGAACCCAGTCCACGAAAAGAAGCCTCCCAAAGAAGTCAAGAAGAAAAGGTGGAACCGTGCCAAGCTTTCTCTGGCCCAGAGGAAAGACCGTGTTGCCCAGAAGAAAGCCAGCTTCCTCCGGGCTCAGGAACAAGAGGCTTCAGACTGATGTGGTTCATCTGCTTCAGAAATCGTTCAATAAATTTATGAAAAAAGTCAAAAAAAAAAAAAAAAAAAAACCTGGGGGGGGGCCCGGACCCCAATTTTTGGCCCCTTTAGGGGGGGTTAAATATCTATGAGAACTGCGTGGTGACCCGCCGCTCACTGTAACCGTAGGACCTACCC] [+] EMBL FR0057148 [TTGGCTCCGGGCTCCTTCTTAAGGAGACAAAAAGACTGCAAGATGGGTTTTGTGAAAGTGGTGAAGAACAAGGCCTACTTCAAGAGGTACCAGGTCAAATTCAGGAGGAGGAGAGAGGGAAAGACTGACTACTTTGCTCGCAAGCGCCTTGTCGTACAGGATAAGAACAAGTACAACACACCCAAGTACCGGATGATTGTCCGTTTCTCCAACCGGGACATCGTCTGCCAGATTGCCTATGCCAAGATCGAGGGTGACATGATCGTGTGTGCGGCCTATTCACACGAGCTGCCAAAATACGGGGTCTCCGTGGGCTTGACAGATTACGCAGCAGCCTATTGCACCGGTTTGCTGCTGGCTCGCCGACTGCTGAACAAGTTTGGCCTGGGATAATGTGTATGAAGGCCAGGTTGAGGTGACCGGTGAGGA ] [+] EMBL CA330218 [ CGGGCTCCTTCTTAAGGAGACAAAAAGACTGCAAGATGGGTTTTGTGAAAGTGGTGAAGAACAAGGCCTACTTCAAGAGGTACCAGGTCAAATTCAGGAGGAGGAGAGAGGGAAAGACTGACTACTTTGCTCGCAAGCGCCTTGTCGTACAGGATAAGAACAAGTACAACACACCCAAGTACCGGATGATTGTCCGTTTCTCCAACCGGGACATCGTCTGCCAGATTGCCTATGCCAAGATCGAGGGTGACATGATCGTGTGTGCGGCCTATTCACACGAGCTGCCAAAATACGGCGTCTCCGTGGGCTTGACAAATTACGCAGCAGCCTATTGCACCGGTTTGCTGCTGGCTCGCCGACTGCTGAACAAGTTTGGCCT GGATAAGGTGTATGAAGGCCAGGTTGAGGTGACCGGTGAGGAATTCAATGTGGAGAGCATTGATGGTCAGCCAGGTGCTTTTACCTGCTATCTGGATGCTGGACTTGCAAGAACCACCACAGGCAACAAAGTATTTGGTGCAGTTAAGGGAGCTGTGGATGGAGGCCTGTCCATCCCACACAGCACAAAGCGTTTCCCCGGATACGACCCCGAGAGCAAGGAGTTTAACGCCGAGGCCCATCGC ] [+] EMBL CA330838 [ TGGGTTTTGTGAAAGTGGTGAACCCCAAAGCCTACTTCGAGAGGTACCAGGTCAAATTCAGGAGGAGGAGAGAGGGAAAGACTGACTACTTTGCTCGCAAGCGCCTTGTCGTACAGGATAAGAACAAGTACAACACACCCAAGTACCGGATGATTGTCCGTTTCTCCAACCGGGACATCGTCTGCCAGATTGCCTATGCCAAGATCGAGGGTGACATGATCTTGTGTGCGGCCTATTCACACGAGCTGCCAAAATACGGCGTCTCCGTGGGCTTGACAAATTACGCAGCAGCCTATTGCACCGGTTTGCTGCTGGCTCGCCGACTGCTGAACAAGTTTGGCCT GGATAAGGTGTATGAAGGCCAGGTTGAGGTGACCGGTGAGGAATTCAATGTGGAGAGCATTGATGGTCAGCCAGGTGCTTTTACCTGCTATCTGGA ] [+] EMBL CA588669 [ ccTTCAGGAGGAGGAGAGAGGGAAAGACTGACTACTTTGCTCGCAAGCGCCTTGTCGTACAGGATAAGAACAAGTACAACACACCCAAGTACCGGATGATTGTCCGTTTCTCCAACCGGGACATCGTCTGCCAGTTTGCCTATGCCAAGATCGAGGGTGACATGATCGTGTGTGCGGCCTATTCACACGAGCTGCCAAAATACGGCGTCTCCGTGGGCTTGATTTTTTATGCAGCAGCCTATTGCACCGGTTTGCTGCTGGCTCGCCGACTGCTGAACAAGTTTGGCCT GGATAAGGTGTATGAAGGCCAGGTTGAGGTGACCGGTGAGGAATTCAATGTGGAGAGCATTGATGGTCAGCCAGGTGCTTTTACCTGCTATCTGGACGCTGGACTTGCAAGAACCACCACAGGCAACAAAGTATTTGGTGCAGTTAAGGGAGCTGTGGATGGAGGCCTGTCCATCCCACACAGCACAAAGCGTTTCCCCGGATACGACCCTGAGAGCAAGGAGTTTAACGCCGAGGCCCATCGCAAACACATCATGGGTATCAACGTGTCCGAGTACATGAGCTACCTGATGGAGGAGGACGAGGACACGGACAAAAAGCAATTCTCCCGCTTCATCAAGAATGGAGTAACTCCTGATATGATTGAAGAA ] [+] EMBL CA845201 [ CGTGGGCTTGACAAATTACGCAGCAGCCTATTGCACCGGTTTGCTGCTGGCTCGCCGACTGCTGAACAAGTTTGGCCT GGATAAGGTGTATGAAGGCCAGGTTGAGGTGACCGGTGAGGAATTCAATGTGGAGAGCATTGATGGTCAGCCAGGTGCTTTTACCTGCTATCTGGACGCTGGACTTGCAAGAACCACCACAGGCAACAAAGTATTTGGTGCAGTTAAGGGAGCTGTGGATGGAGGCCTGTCCATCCCACACAGCACAAAGCGTTTCCCCGGATACGACCCTGAGAGCAAGGAGTTTAACGCCGAGGCCCATCGCAAACACATCATGGGTATCAACGTGTCCGAGTACATGAGCTACCTGATGGAGGAGGACGAGGACACGTACAAAAAGCAATTCTCCCGCTTCATCAAGAATGGAGTAACTCCTGATATGATTGAAGAAATGTACAAAAAGGCTCATGCCTCCATTCGTGAGAACCCAGTCCACGAAAAGAAGCCTCCCAAAGAAGTCAAGAAGAAAAGGTGGAACCGTGCCAAGCTTTCTCTGGGCCAGAGGAAAGACCGTGTTGCCCAGAAGAAAGCCAGCTTCCTCCGGGCT ] [+] EMBL CA333606 [ gcacGAGGACCGGTGAGGAATTCAATGTGGAGAGCATTGATGGTCAGCCAGGTGCTTTTACCTGCTATCTGGATGCTGGACTTGCAAGAACCACCACAGGCAACAAAGTATTTGGTGCAGTTAAGGGAGCTGTGGATGGAGGCCTGTCCATCCCACACAGCACAAAGCGTTTCCCCGGATACGACCCTGAGAGCAAGGAGTTTAACGCCGAGGCCCATCGCAAACACATCATGGGTATCAACGTGTCCGAGTACATGAGCTACCTGATGGAGGAGGACGAGGACACGTACAAAAAGCAATTCTCCCGCTTCATCAAGAATGGAGTAACTCCTGATATGATTGAAGAAATGTACAAAAAGGCTCATGCCTCCATTCGTGAGAACCCAGTCCACGAAAAGAAGCCTCCCAAAGAAGTCAAGAAGAAAAGGTGGAACCGTGCCAAGCTTTCTCTGGCCCAGAGGAAAGACCGTGTTGCCCAGAAGAAAGCCAGCTTCCTCCGGGCTCAGGAACAAGAGGCTTCAGACTGATGTGGTTCATCTGCTTCAGAAATCGTTCAATAAATTTATGAAAAA ] [+] EMBL CA330203 [ CAAAAAGGCTCATGCCTCCATTCGTGAGAACCCAGTCCACGAAAAGAAGCCTCCCAAAGAAGTCAAGAAGAAAAGGTGGAACCGTGCCAAGCTTTCTCTGGCCCAGAGGAAAGACCGTGTTGCCCAGAAGAAAGCCAGCTTCCTCCGGGCTCAGGAACAAGAGGCTTCAGACTGATGTGGTTCATCTGCTTCAGAAATCGTTCAATAAATTTATGAAAAAAGTCAAAAAAAA ] [+] EMBL CA845533 [ GCCTCCCAAAGAAGTCAAGAAGAAAAGGTGGAACCGTGCCAAGCTTTCTCTGGCCCAGAGGAAAGACCGTGTTGCCCAGAAGAAAGCCAGCTTCCTCCGGGCTCAGGAACAAGAGGCTTCAGACTGATGTGGTTCATCTGCTTCAGAAATCGTTCAATAAATTTATGAAAAAAG ] [+] EMBL CA845426 [ GAAGTCAAGAAGAAAAGGTGGAACCGTGCCAAGCTTTCTCTGGCCCAGAGGAAAGACCGTGTTGCCCAGAAGAAAGCCAGCTTCCTCCGGGCTCAGGAACAAGAGGCTTCAGACTGATGTGGTTCATCTGCTTCAGAAATCGTTCAATAAATTTATGAAAAAAGTC ] [+] EMBL CA845717 [ GGGCTCAGGAACAAGAGGCTTCAGACTGATGTGGCTTATAAACTTCAGAAATCGTTCAATAAATTTATGAAAAAAGTCAAA ] [+] EMBL FR0057900 [ CAGGAACAAGAGGCTTCAGACTGATGGGGTTCATCTGCTTCAGAAATCGTTCAATAAATTTATGAAAAAAGTCAAAAAAAAAAAAAAAAAAAAACCTGGGGGGGGGCCCGGACCCCAATTTTTGGCCCCTTTAGGGGGGGTTAAATATCTATGAGAACTGCGTGGTGACCCGCCGCTCACTGTAACCGTAGGACCTACCC] consensusID : consensus_2692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [TCTGCTTGACAAATTACGCTGCAACCTATTGTTCCCGCTTGCTGCTGCCTCGCCGACTGCTTAACGAGTTTGTTCTTGATACAGTGTATGACGGCCACTCTGAGGGGACCGTGGAGGAATTCACTGCGTATACCCTTGATGGTCAGCCAGGGGCTTTTACCTGCTATCTGGACGATGGACTTGCAATAACCATCACAAGCAACACCGTATTTGGTGCCCTAAAAGCAGCTGTGGATGTTGTCCTGTCCATCCCACACAGCACAAAGTGTTTCTCCGGATACGACCCTGTAGACAAAGATTTTATCTCCGAGGCCCATCACAAACACATCCTGGGTATCCACGTGACCGAGTACATGAGCTACCTGATGAAGGATGACGACGACACGTACAAAAAGCAATTCTCCCGCTTCATCAAGAGTGGAATAACTCCTGATATGATTGAAGAAATGTACAAGAAGGCTCATGCCTCCATTCGTGAGAACCCAGTCCACGAAAAGAAGCCTCCCTCACAATTCAAGAAGAAAAGGTGGAACCGTGTCAAGCTTTCTCTGTCCCAGAAGAAAGACCGTGTTGCCCAAAAGAAAGCCAGCTTCCTC] [+] EMBL CA845331 [TCTGCTTGACAAATTACGCTGCAACCTATTGTTCCCGCTTGCTGCTGCCTCGCCGACTGCTTAACGAGTTTGTTCTTGATACAGTGTATGACGGCCACTCTGAGGGGACCGTGGAGGAATTCACTGCGTATACCCTTGATGGTCAGCCAGGGGCTTTTACCTGCTATCTGGACGATGGACTTGCAATAACCATCACAAGCAACACCGTATTTGGTGCCCTAAAAGCAGCTGTGGATGTTGTCCTGTCCATCCCACACAGCACAAAGTGTTTCTCCGGATACGACCCTGTAGACAAAGATTTTATCTCCGAGGCCCATCACAAACACATCCTGGGTATCCACGTGACCGAGTACATGAGCTACCTGATGAAGGATGACGACGACACGTACAAAAAGCAATTCTCCCGCTTCATCAAGAGTGGAATAACTCCTGATATGATTGAAGAAATGTACAAGAAGGCTCATGCCTCCATTCGTGAGAACCCAGTCCACGAAAAGAAGCCTCCCTCACAATTCAAGAAGAAAAGGTGGAACCGTGTCAAGCTTTCTCTGTCCCAGAAGAAAGACCGTGTTGCCCAAAAGAAAGCCAGCTTCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2692#0 TTGGCTCCGGGCTCCTTCTTAAGGAGACAAAAAGACTGCAAGATGGGTTTTGTGAAAGTG 60 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GTGAAGAACAAGGCCTACTTCAAGAGGTACCAGGTCAAATTCAGGAGGAGGAGAGAGGGA 120 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 AAGACTGACTACTTTGCTCGCAAGCGCCTTGTCGTACAGGATAAGAACAAGTACAACACA 180 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 CCCAAGTACCGGATGATTGTCCGTTTCTCCAACCGGGACATCGTCTGCCAGATTGCCTAT 240 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GCCAAGATCGAGGGTGACATGATCGTGTGTGCGGCCTATTCACACGAGCTGCCAAAATAC 300 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GGCGTCTCCGTGGGCTTGACAAATTACGCAGCAGCCTATTGCACCGGTTTGCTGCTGGCT 360 consensus_2692#1 ----------TCTGCTTGACAAATTACGCTGCAACCTATTGTTCCCGCTTGCTGCTGCCT 50 * **************** *** ******* ** * ********* ** consensus_2692#0 CGCCGACTGCTGAACAAGTTTGGCCTGGATAAGGTGTATGAAGGCCAGGTTGAGGTGACC 420 consensus_2692#1 CGCCGACTGCTTAACGAGTTTGTTCTTGATACAGTGTATGACGGCCACTCTGAGGGGACC 110 *********** *** ****** ** **** ******** ***** ***** **** consensus_2692#0 GGTGAGGAATTCAATGTGGAGAGCATTGATGGTCAGCCAGGTGCTTTTACCTGCTATCTG 480 consensus_2692#1 GTGGAGGAATTCACTGCGTATACCCTTGATGGTCAGCCAGGGGCTTTTACCTGCTATCTG 170 * ********** ** * * * * **************** ****************** consensus_2692#0 GACGCTGGACTTGCAAGAACCACCACAGGCAACAAAGTATTTGGTGCAGTTAAGGGAGCT 540 consensus_2692#1 GACGATGGACTTGCAATAACCATCACAAGCAACACCGTATTTGGTGCCCTAAAAGCAGCT 230 **** *********** ***** **** ****** *********** * ** * **** consensus_2692#0 GTGGATGGAGGCCTGTCCATCCCACACAGCACAAAGCGTTTCCCCGGATACGACCCTGAG 600 consensus_2692#1 GTGGATGTTGTCCTGTCCATCCCACACAGCACAAAGTGTTTCTCCGGATACGACCCTGTA 290 ******* * ************************* ***** *************** consensus_2692#0 AGCAAGGAGTTTAACGCCGAGGCCCATCGCAAACACATCATGGGTATCAACGTGTCCGAG 660 consensus_2692#1 GACAAAGATTTTATCTCCGAGGCCCATCACAAACACATCCTGGGTATCCACGTGACCGAG 350 *** ** **** * ************ ********** ******** ***** ***** consensus_2692#0 TACATGAGCTACCTGATGGAGGAGGACGAGGACACGTACAAAAAGCAATTCTCCCGCTTC 720 consensus_2692#1 TACATGAGCTACCTGATGAAGGATGACGACGACACGTACAAAAAGCAATTCTCCCGCTTC 410 ****************** **** ***** ****************************** consensus_2692#0 ATCAAGAATGGAGTAACTCCTGATATGATTGAAGAAATGTACAAAAAGGCTCATGCCTCC 780 consensus_2692#1 ATCAAGAGTGGAATAACTCCTGATATGATTGAAGAAATGTACAAGAAGGCTCATGCCTCC 470 ******* **** ******************************* *************** consensus_2692#0 ATTCGTGAGAACCCAGTCCACGAAAAGAAGCCTCCCAAAGAAGTCAAGAAGAAAAGGTGG 840 consensus_2692#1 ATTCGTGAGAACCCAGTCCACGAAAAGAAGCCTCCCTCACAATTCAAGAAGAAAAGGTGG 530 ************************************ * ** ***************** consensus_2692#0 AACCGTGCCAAGCTTTCTCTGGCCCAGAGGAAAGACCGTGTTGCCCAGAAGAAAGCCAGC 900 consensus_2692#1 AACCGTGTCAAGCTTTCTCTGTCCCAGAAGAAAGACCGTGTTGCCCAAAAGAAAGCCAGC 590 ******* ************* ****** ****************** ************ consensus_2692#0 TTCCTCCGGGCTCAGGAACAAGAGGCTTCAGACTGATGTGGTTCATCTGCTTCAGAAATC 960 consensus_2692#1 TTCCTC------------------------------------------------------ 596 ****** consensus_2692#0 GTTCAATAAATTTATGAAAAAAGTCAAAAAAAAAAAAAAAAAAAAACCTGGGGGGGGGCC 1020 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 CGGACCCCAATTTTTGGCCCCTTTAGGGGGGGTTAAATATCTATGAGAACTGCGTGGTGA 1080 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 CCCGCCGCTCACTGTAACCGTAGGACCTACCC 1112 consensus_2692#1 -------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |