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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 680 fasta sequence
[ACAAAAAATTGGGTACCGGGCCCCCCCCGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTCACTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA-CCGTGACCTGCT-CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAGAACAGCTCAGTCTCCAAGAAGATCTGTCCGTCTGT]
[-] EMBL FR0056350 [ACAAAAAATTGGGTACCGGGCCCCCCCCGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTCACTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCG ]
[+] EMBL CA331664 [ TTTTTTCACTGGGGAAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAAATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAAATCATTCCGTCGGCCCTGATGGCTGCCATCAAGTCCTGGGGCTGGCTAAAAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGA ]
[+] EMBL CA329338 [ TGCACTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAAAAAAGCTCAGTCTCCAAGAAAATCTGTCCGTCTGT]
[+] EMBL CA329214 [ TTCACTGGTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAAAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAAATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAGAACAGCTCAGTCTCCAA ]
[+] EMBL CA331101 [ tACTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACCGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCA ]
[+] EMBL CA331918 [ CTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAGGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACCAATACCCTTGTAGAA ]
[+] EMBL CA331949 [ TGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAGAACAGCTCAGTCTCCAAGAAGATCTG ]
[+] EMBL CA329494 [ TGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAGAACAGCTCAGTCTCCAAGAAGATCTGTCCGTC ]
[+] EMBL CA332370 [ GTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGAACCACGTTTGATACGGGACGAATACCCTTGTAGAACAGCTCAGTCTCCAAGAA ]
[+] EMBL CA331670 [ GTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGTTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCCTCTTGTCCAAGTGACTTCTGAAACCACCGTAAATGACCCGGGACCTGCTCCCTAAAGGGCCATTTGGGAATAactg ]
[+] EMBL CA332073 [ TAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAAC ]
consensusID : consensus_2693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[AAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAAATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAAAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCACCGTAAATGACCGTGACCTGCTCCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAACAACTCAGTCAGTCTAACGCCCCTGTTCAGGAACTGCTGGGTGGCGGCGTTCAAATCCAAACCAAACTGAGCAAAAAGGGCAACTTCCCGGACCTGAGCCAGCTCCAATTTCATGGTACCAACCCCATGTTATATGGCCCATATCTGGGAAACAAAACCGACTCTGGAACCCAACAGACCCACGATGAATAGAGAAAA]
[+] EMBL CA329294 [AAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAAATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAAAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCACCGTAAATGACCGTGACCTGCTCCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAACAACTCAGTCAGTCTAACGCCCCTGTTCAGGAACTGCTGGGTGGCGGCGTTCAAATCCAAACCAAACTGAGCAAAAAGGGCAACTTCCCGGACCTGAGCCAGCTCCAATTTCATGGTACCAACCCCATGTTATATGGCCCATATCTGGGAAACAAAACCGACTCTGGAACCCAACAGACCCACGATGAATAGAGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2693#0 ACAAAAAATTGGGTACCGGGCCCCCCCCGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTC 60
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 ACTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTT 120
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 CACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGC 180
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 TAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGAT 240
consensus_2693#1 ------------------------AAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGAT 36
************************************
consensus_2693#0 GCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGA 300
consensus_2693#1 GCCTCTGAAATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAAA 96
******** ************************************************* *
consensus_2693#0 ATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAG 360
consensus_2693#1 ATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAG 156
************************************************************
consensus_2693#0 TGACCTCTGACACCAGCGTAAATGACCGTGACCTGCTCCTCAATGGCCATTGGGGAGTAC 420
consensus_2693#1 TGACCTCTGACACCACCGTAAATGACCGTGACCTGCTCCTCAATGGCCATTGGGGAGTAC 216
*************** ********************************************
consensus_2693#0 TGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCG 480
consensus_2693#1 TGTCCCTGTTTCAACAACTCAGTCAGTCTAACGCCCCTGTTCAGGAACTGCTGGGTGGCG 276
************* ** ***************************** *************
consensus_2693#0 GCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCC 540
consensus_2693#1 GCGTTCAAATCCAAACCAAACTGAGCAAAAAGGGCAACTTCCCGGACCTGAGCCAGCTCC 336
**** ** *** * ** ***** ** ** *** ***** *** *************
consensus_2693#0 AGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTG 600
consensus_2693#1 AATTTCATGGTACCAACCCCATGTTATATGGCCCATATCTGGGAAACAAAACCGACTCTG 396
* ************* ** * **** ******* ****** * ** * *********
consensus_2693#0 GACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAGAACAGCTCAGTCTCC 660
consensus_2693#1 GAACCCAACAGACCCACGATGA-ATAGAGAAAA--------------------------- 428
** * *********** *** * * ** *
consensus_2693#0 AAGAAGATCTGTCCGTCTGT 680
consensus_2693#1 --------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |