These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 680 fasta sequence [ACAAAAAATTGGGTACCGGGCCCCCCCCGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTCACTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA-CCGTGACCTGCT-CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAGAACAGCTCAGTCTCCAAGAAGATCTGTCCGTCTGT] [-] EMBL FR0056350 [ACAAAAAATTGGGTACCGGGCCCCCCCCGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTCACTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCG ] [+] EMBL CA331664 [ TTTTTTCACTGGGGAAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAAATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAAATCATTCCGTCGGCCCTGATGGCTGCCATCAAGTCCTGGGGCTGGCTAAAAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGA ] [+] EMBL CA329338 [ TGCACTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAAAAAAGCTCAGTCTCCAAGAAAATCTGTCCGTCTGT] [+] EMBL CA329214 [ TTCACTGGTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAAAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAAATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAGAACAGCTCAGTCTCCAA ] [+] EMBL CA331101 [ tACTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACCGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCA ] [+] EMBL CA331918 [ CTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAGGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACCAATACCCTTGTAGAA ] [+] EMBL CA331949 [ TGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAGAACAGCTCAGTCTCCAAGAAGATCTG ] [+] EMBL CA329494 [ TGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAGAACAGCTCAGTCTCCAAGAAGATCTGTCCGTC ] [+] EMBL CA332370 [ GTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCCAGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTGGACACAGACAGAACCACGTTTGATACGGGACGAATACCCTTGTAGAACAGCTCAGTCTCCAAGAA ] [+] EMBL CA331670 [ GTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGTTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCCTCTTGTCCAAGTGACTTCTGAAACCACCGTAAATGACCCGGGACCTGCTCCCTAAAGGGCCATTTGGGAATAactg ] [+] EMBL CA332073 [ TAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTTCACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGCTAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAAATGA CCGTGACCTGCT CCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCGGCGTCCAGATCAGAGCCGAAC ] consensusID : consensus_2693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [AAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAAATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAAAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCACCGTAAATGACCGTGACCTGCTCCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAACAACTCAGTCAGTCTAACGCCCCTGTTCAGGAACTGCTGGGTGGCGGCGTTCAAATCCAAACCAAACTGAGCAAAAAGGGCAACTTCCCGGACCTGAGCCAGCTCCAATTTCATGGTACCAACCCCATGTTATATGGCCCATATCTGGGAAACAAAACCGACTCTGGAACCCAACAGACCCACGATGAATAGAGAAAA] [+] EMBL CA329294 [AAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGATGCCTCTGAAATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAAAATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAGTGACCTCTGACACCACCGTAAATGACCGTGACCTGCTCCTCAATGGCCATTGGGGAGTACTGTCCCTGTTTCAACAACTCAGTCAGTCTAACGCCCCTGTTCAGGAACTGCTGGGTGGCGGCGTTCAAATCCAAACCAAACTGAGCAAAAAGGGCAACTTCCCGGACCTGAGCCAGCTCCAATTTCATGGTACCAACCCCATGTTATATGGCCCATATCTGGGAAACAAAACCGACTCTGGAACCCAACAGACCCACGATGAATAGAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2693#0 ACAAAAAATTGGGTACCGGGCCCCCCCCGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTC 60 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 ACTGTTGTAAAATTTTATTCGGACAAATCTGTACATGGAGGTTTAGGCCTTCAGTGTGTT 120 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 CACATATATATTTAAGCATAATGGGGACAAATAGGTTGTTCACCGAAGATGGAGAAGTGC 180 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 TAGCCTCACTCAAAACTGGACAGGAAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGAT 240 consensus_2693#1 ------------------------AAGTTGAGTACAATCTGCTTCAGTTTAGCATCTGAT 36 ************************************ consensus_2693#0 GCCTCTGAGATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAGA 300 consensus_2693#1 GCCTCTGAAATCATTCCGTCGGCCCTGATGGCTGCCAGCAAGTCCTGGTGCTGGCTAAAA 96 ******** ************************************************* * consensus_2693#0 ATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAG 360 consensus_2693#1 ATGTGCTGCAGGAAAGCCTTCTCAAACTTTGTGATCTTGCTGGGCTCCATCTTGTCCAAG 156 ************************************************************ consensus_2693#0 TGACCTCTGACACCAGCGTAAATGACCGTGACCTGCTCCTCAATGGCCATTGGGGAGTAC 420 consensus_2693#1 TGACCTCTGACACCACCGTAAATGACCGTGACCTGCTCCTCAATGGCCATTGGGGAGTAC 216 *************** ******************************************** consensus_2693#0 TGTCCCTGTTTCAGCAGCTCAGTCAGTCTAACGCCCCTGTTCAGGAGCTGCTGGGTGGCG 480 consensus_2693#1 TGTCCCTGTTTCAACAACTCAGTCAGTCTAACGCCCCTGTTCAGGAACTGCTGGGTGGCG 276 ************* ** ***************************** ************* consensus_2693#0 GCGTCCAGATCAGAGCCGAACTGGGCGAAGGCGGCGACTTCACGGTACTGAGCCAGCTCC 540 consensus_2693#1 GCGTTCAAATCCAAACCAAACTGAGCAAAAAGGGCAACTTCCCGGACCTGAGCCAGCTCC 336 **** ** *** * ** ***** ** ** *** ***** *** ************* consensus_2693#0 AGTTTCATGGTACCAGCCACCTGTTTCATGGCCCTGGTCTGGGCAGCAGACCCGACTCTG 600 consensus_2693#1 AATTTCATGGTACCAACCCCATGTTATATGGCCCATATCTGGGAAACAAAACCGACTCTG 396 * ************* ** * **** ******* ****** * ** * ********* consensus_2693#0 GACACAGACAGACCCACGTTGATAGCGGGACGAATACCCTTGTAGAACAGCTCAGTCTCC 660 consensus_2693#1 GAACCCAACAGACCCACGATGA-ATAGAGAAAA--------------------------- 428 ** * *********** *** * * ** * consensus_2693#0 AAGAAGATCTGTCCGTCTGT 680 consensus_2693#1 -------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |