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Takifugu rubripes
cluster # 2698 cluster # 2698       Sequences # 13       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2698#0 length = 589 sequences # 12  
 consensus_2698#1 length = 175 sequences # 1  
consensusID : consensus_2698#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 589
fasta sequence 
                              [AGACCCGGGTAAACAGCCACCATGACGAACACAAAGGGC-AAGAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTACACATAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCAAGTTTTGGTCC]

[+] EMBL FR0055138            [AGACCCGGGTAAACAGCCACCATGACGAACACAAAGGGC AAGAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCATGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTT                                                                                               ]
[+] EMBL CA845268             [    CCGGGTAAACAGCCACCATGACGAACACAAATGTC AACAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGA                                                                                                                                    ]
[+] EMBL FR0057980            [                      TGACGAACACAATTGGC AAGAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAG                                                                                                                                                                                                                                                       ]
[+] EMBL FR0055332            [                              ACAAAGGGCAAAGAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTT                                                                                               ]
[+] EMBL FR0056017            [                                     GC AAGAGGAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGGCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCANGAAGAATGCACCCCAGCTGCTGGAGCCCATCC                                                                                                         ]
[+] EMBL FR0057783            [                                             GAGGGGTACCAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGGTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGGTATCATGGCAAAACAGGACGTGTGTACAATGGAACCCAGCACGCTGGTGGCATCATTGGCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGATTTCTGCAGCGCGTGAAAGAAAACGATGCTAAAAAGCTGTAGGCCAAGCACAATGGGACCTGGGTGGA                                                                                                                                                                                            ]
[+] EMBL FR0056439            [                                                    ACAAGGTACATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACANGCAAGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGT                                                                                                                                                                                                                                                  ]
[+] EMBL CA845101             [                                                                                         GCCCTGTCCCCCTGTCAACCTACATGCGCATCTACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCTCACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAACAAAATGGCACCTGGGTGGAACTGAAACGTCAAGCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCACACTGCTGGAAACCATC                                                                                                          ]
[+] EMBL CA846757             [                                                                                                                                                                                                          ACAGGACGTGTGTACAATGTAACCCTGCACCCTGTTGGCATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATTGAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGATGCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGTTCTCTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTACAC                                                      ]
[+] EMBL CA330393             [                                                                                                                                                                                                                                                                                                                       AGCACTCAAAGAGCAGGGACAGATTTCTGCAGCGCGACAAAGAAAACGATGCTAAAAAGATGGAGGACAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGAGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCA                                                                                                       ]
[+] EMBL CA341110             [                                                                                                                                                                                                                                                                                                                                                                                 GCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTAC                                                        ]
[+] EMBL FR0057046            [                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCCATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTACACATAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCAAGTTTTGGTCC]




>consensus_2698#0
AGACCCGGGTAAACAGCCACCATGACGAACACAAAGGGCAAGAGGAGGGGTACCAGGTAC
ATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATC
TACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCT
CACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGC
ATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATT
GAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGAT
GCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCT
CCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCC
ATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTACACATAAA
AAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCAAGTTTTGGTCC

consensusID : consensus_2698#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence 
                              [GTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCAACNNCCCAGGCCTGGCCTGGGGAGCCCCCCATTCCCCCATAATGAAAGTTTCCATTGGGCATAATGGAAGCTGGAAAAAAATTAAATGGGATTTGGAACCCCTAAAAAA]

[+] EMBL CA845530             [GTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCAACNNCCCAGGCCTGGCCTGGGGAGCCCCCCATTCCCCCATAATGAAAGTTTCCATTGGGCATAATGGAAGCTGGAAAAAAATTAAATGGGATTTGGAACCCCTAAAAAA]




>consensus_2698#1
GTGGAACTGAAACGTCAGCCCGCTCCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAG
AATGCAACNNCCCAGGCCTGGCCTGGGGAGCCCCCCATTCCCCCATAATGAAAGTTTCCA
TTGGGCATAATGGAAGCTGGAAAAAAATTAAATGGGATTTGGAACCCCTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2698#0      AGACCCGGGTAAACAGCCACCATGACGAACACAAAGGGCAAGAGGAGGGGTACCAGGTAC 60
consensus_2698#1      ------------------------------------------------------------
                                                                                  

consensus_2698#0      ATGTTCAGCAGGCCATTCCGCAAGCATGGCCCTGTCCCCCTGTCAACCTACATGCGCATC 120
consensus_2698#1      ------------------------------------------------------------
                                                                                  

consensus_2698#0      TACAAGAAGGGTGACATCGTTGACATCAAGGGTACAGGAACGGTCCAGAAAGGAATGCCT 180
consensus_2698#1      ------------------------------------------------------------
                                                                                  

consensus_2698#0      CACAAGTGTTATCATGGCAAAACAGGACGTGTGTACAATGTAACCCAGCACGCTGTTGGC 240
consensus_2698#1      ------------------------------------------------------------
                                                                                  

consensus_2698#0      ATCATTGTCAACAAGCAGGTCAAGGGTAAGATCCTGGCCAAGAGGATTAATGTGCGCATT 300
consensus_2698#1      ------------------------------------------------------------
                                                                                  

consensus_2698#0      GAGCACGTGAAGCACTCAAAGAGCAGGGACAGTTTTCTGCAGCGCGTCAAAGAAAACGAT 360
consensus_2698#1      ------------------------------------------------------------
                                                                                  

consensus_2698#0      GCTAAAAAGCTGGAGGCCAAGCAGAATGGCACCTGGGTGGAACTGAAACGTCAGCCCGCT 420
consensus_2698#1      ------------------------------------GTGGAACTGAAACGTCAGCCCGCT 24
                                                          ************************

consensus_2698#0      CCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCACCCCAGCTGCTGGAGCCC 480
consensus_2698#1      CCTCCTCGTGATGCTCACTTTGTCAGCACCAAGAAGAATGCA-----ACNNCCCAGGCCT 79
                      ******************************************      *  *    *** 

consensus_2698#0      ATCCCATATGAGTTCATGGCATAATGAGCTGAAAAAAATAAATGTATTTGTACACATAAA 540
consensus_2698#1      GGCCTGGG-GAGCCC----CCCATTCCCCCATAATGAAAGTTTCCATTGG---GCATAAT 131
                        **     ***  *    *  * *   *   **  **    *  *** *    ***** 

consensus_2698#0      AAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCAAGTTTTGGTCC 589
consensus_2698#1      GGAAGCTGGAAAAAAATT--AAATGGGATTTGGAACCCCTAAAAAA--- 175
                        **     ******* *  *   ***    ** ***


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)