cluster # 27

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Takifugu rubripes
cluster # 27 cluster # 27 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_27#0 length = 329 sequences # 1

consensus_27#1 length = 290 sequences # 1

consensusID : consensus_27#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [TAAACTTTCATTCACTGACGATCAGGTACCACGATAGCCGCCATATGCGCATCTATGGGAGGGTAGCGGCGCTTTCGCAGAGCCTATNGGTCATTCATCATCAGCGTATTCTCTCGCACGGATCTCCAGATCCCATCCCGACACAGGTCCTCTGCTTTACAGCCGAATCCTGATCACCTAAACACAACAGCCGGATTTTTTCGGAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACGATGCCTTAGACTTGGAGAGGATCCTTGCACAAGATGGAGATCAATGGGCATCAGGCCATGGACGACCCCATGGAGGAGGGA]

[+] EMBL FR0059161            [TAAACTTTCATTCACTGACGATCAGGTACCACGATAGCCGCCATATGCGCATCTATGGGAGGGTAGCGGCGCTTTCGCAGAGCCTATNGGTCATTCATCATCAGCGTATTCTCTCGCACGGATCTCCAGATCCCATCCCGACACAGGTCCTCTGCTTTACAGCCGAATCCTGATCACCTAAACACAACAGCCGGATTTTTTCGGAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACGATGCCTTAGACTTGGAGAGGATCCTTGCACAAGATGGAGATCAATGGGCATCAGGCCATGGACGACCCCATGGAGGAGGGA]




>consensus_27#0
TAAACTTTCATTCACTGACGATCAGGTACCACGATAGCCGCCATATGCGCATCTATGGGA
GGGTAGCGGCGCTTTCGCAGAGCCTATNGGTCATTCATCATCAGCGTATTCTCTCGCACG
GATCTCCAGATCCCATCCCGACACAGGTCCTCTGCTTTACAGCCGAATCCTGATCACCTA
AACACAACAGCCGGATTTTTTCGGAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGT
AGATAACGATGCCTTAGACTTGGAGAGGATCCTTGCACAAGATGGAGATCAATGGGCATC
AGGCCATGGACGACCCCATGGAGGAGGGA

consensusID : consensus_27#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [GAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACGATGCCTTAGACTTGGAGAGGAATCCTGGCACAAGATGGAGGTAAACAGCGTTAGTAGTGAGATCAATGGGCATCAGGCCATGGACGAGCCCATGGAGGAGGGAGAGTCTTTCTCACACTGCGATGAAGGGACATATGAGGAGATTCCAATCACCCATCATGTGAAAGAGGGTTGTGAGAAAGCCGAGCCGTCTCAGTTCGAACTGCTCAAAGTCCTCGGCCAGGGTTCTTTTGGCAAGGTATTTC]

[+] EMBL FR0060372            [GAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACGATGCCTTAGACTTGGAGAGGAATCCTGGCACAAGATGGAGGTAAACAGCGTTAGTAGTGAGATCAATGGGCATCAGGCCATGGACGAGCCCATGGAGGAGGGAGAGTCTTTCTCACACTGCGATGAAGGGACATATGAGGAGATTCCAATCACCCATCATGTGAAAGAGGGTTGTGAGAAAGCCGAGCCGTCTCAGTTCGAACTGCTCAAAGTCCTCGGCCAGGGTTCTTTTGGCAAGGTATTTC]




>consensus_27#1
GAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACGATGCCTTAGACTTGG
AGAGGAATCCTGGCACAAGATGGAGGTAAACAGCGTTAGTAGTGAGATCAATGGGCATCA
GGCCATGGACGAGCCCATGGAGGAGGGAGAGTCTTTCTCACACTGCGATGAAGGGACATA
TGAGGAGATTCCAATCACCCATCATGTGAAAGAGGGTTGTGAGAAAGCCGAGCCGTCTCA
GTTCGAACTGCTCAAAGTCCTCGGCCAGGGTTCTTTTGGCAAGGTATTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_27#0      --TAAACTTTCATTCACTGACGATCAGGTACCACGATAGCCGCCATATGCGCATCTATGG 58
consensus_27#1      GAGGAACAGATATGCAACGTGGAGCGGGGGTCTAGGTAGATAACG-ATGCCT-----TAG 54
                        ***    ** **  *  ** * **   *  * ***    *  ****       * *

consensus_27#0      GAGGGTAGCGGCGCTTTCGCAGAGCCTATNGGTCATTCATCATCAGCGTATTCTCTCGCA 118
consensus_27#1      ACTTGGAGAGGAATCCTGGCACAAGATGGAGGT-AAACAGCGTTAG--TAGTG------- 104
                        * ** **     * *** *   *   *** *  ** * * **  ** *        

consensus_27#0      CGGATCTCCAGATCCCATCCCGACACAGGTCCTCTGCTTTACAGCCGAATCCTGATCACC 178
consensus_27#1      -AGATCAATGGGCATCAGGCCATGGACGAGCCCATGGAGGA-GGGAGAGTCTTTCTCAC- 161
                      ****    *    **  **      *  **  **    *  *  ** ** *  **** 

consensus_27#0      TAAACACAACAGCCGGATTTTTTCGGAGGAACAGAT-ATGCAACGTGGAGCGGGGGTCTA 237
consensus_27#1      --ACTGCGATGAAGGGACATATGAGGAGATTCCAATCACCCATCATGTGAAAGAGGGTTG 219
                      *   * *     ***  * *  ****   *  ** *  ** * **     * **  * 

consensus_27#0      GGTAGATAACGATGCCTTAGACTTGGAGAGGATCCTTGCACAAGATGGAGATCAATGGGC 297
consensus_27#1      TGAGAAAGCCGAGCCGTCTCAGTTCGAACTGCTCA------AAGTCCTCGGCCAGGGTTC 273
                     *   *   ***  * *   * ** **   * **       ***     *  **  *  *

consensus_27#0      ATCAGGCCATGGACGACCCCATGGAGGAGGGA 329
consensus_27#1      TTTTGGCAAGGTATTTC--------------- 290
                     *  *** * * *   *

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)