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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 603 fasta sequence
[CGAGGCGTTCGGTGCCCGTTAAAGTCATTGTTGTGGGTCGAACCCGTCCTTTGACCCAGATTAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG-AG-AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC-TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGTCGGCGCCGTGAT-GGGGGGTGTGGAGATGACCCGGGCAGCGGTCAGCGGAGGTATCATCAGCGC]
[+] EMBL CA333225 [CGAGGCGTTCGGTGCCCGTTAAAGTCATTGTTGTGGGTCGAACCCGTCCTTTGACCCAGATTAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCGCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGTCGGCGCCGTGAT GGGGGGTGTGGAGATGACCCGGGCAGCG ]
[+] EMBL CA590921 [ ACCCGTCCTTTGACCCAGATTAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGTC ]
[+] EMBL FR0061045 [ CCGTCCTTTGACCCANATTATCCCGCAGNTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGCCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCCTTTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTTGGAGCAGCGGCCAGCACAGGGCCCAAGC ]
[+] EMBL BU807237 [ GATTAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGTCGGCGCCGTGATGGGGGGGTGTGGAGATGACCCGGGCAGCGGTCAGCGGAGGTATCATCAGCGC]
[+] EMBL CA591569 [ tctTAAGGCCGCAGGTGACACCAGGACAGAGTCCCGGCATCCTGTCAGGG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGG ]
[+] EMBL BU805976 [ TAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGG ]
[+] EMBL CA588133 [ AGCCCTTAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGCGCAT AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAA ]
[+] EMBL CA590886 [ AGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGTCGGC ]
[+] EMBL CA588147 [ AGCCCTTAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGCG AGTAGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAG ]
[+] EMBL CA591566 [ GTCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGA ]
[+] EMBL CA590129 [ CATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACAACATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGNGGCCAAAGATGCTGTGGTCGGCGCCGTGAT GGGGGGTGTGGAGATGACCCGGGCAGCG ]
[+] EMBL FR0059224 [ TCCAGTGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTT ]
consensusID : consensus_2707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[TCCCTCTGAAAGGATCATGAGACTGAACTTAAAACACAAGTGAAGAAGAGTCACCTGCTGGATTAAGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGGACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCCTTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTAT]
[+] EMBL CA590875 [TCCCTCTGAAAGGATCATGAGACTGAACTTAAAACACAAGTGAAGAAGAGTCACCTGCTGGATTAAGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGGACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCCTTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2707#0 CGAGGCGTTCGGTGCCCGTTAAAGTCATTGTTGTGGGTCGAACCCGTCCTTTGACCCAGA 60
consensus_2707#1 -------------------------------------------TCCCTCTGAAAGGATCA 17
* ** * *
consensus_2707#0 TTAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTGAGAGATTGAATCC 120
consensus_2707#1 TGAGACTGAACTTAAAACACAAGTGAAGAAGAGTCACCT-GCTGGATTAAGATTGAATCC 76
* ** * * * * * ** ** * ** ** * * ***********
consensus_2707#0 AGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACC 180
consensus_2707#1 AGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGGACCCGGAGCTACGGCACCAGAACC 136
*********************************** ************************
consensus_2707#0 AACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTC 240
consensus_2707#1 AACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTC 196
************************************************************
consensus_2707#0 AGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCCTTTGCTGAA 300
consensus_2707#1 AGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCCTTTGCTGAA 256
************************************************************
consensus_2707#0 AGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGG 360
consensus_2707#1 AGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGG 316
************************************************************
consensus_2707#0 GTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCT 420
consensus_2707#1 GTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCT 376
************************************************************
consensus_2707#0 GAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGT 480
consensus_2707#1 GAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGT 436
************************************************************
consensus_2707#0 GGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGT 540
consensus_2707#1 GGTGTCGGACACCGTGGGTAT--------------------------------------- 457
*********************
consensus_2707#0 CGGCGCCGTGATGGGGGGTGTGGAGATGACCCGGGCAGCGGTCAGCGGAGGTATCATCAG 600
consensus_2707#1 ------------------------------------------------------------
consensus_2707#0 CGC 603
consensus_2707#1 ---
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |