These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 603 fasta sequence [CGAGGCGTTCGGTGCCCGTTAAAGTCATTGTTGTGGGTCGAACCCGTCCTTTGACCCAGATTAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG-AG-AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC-TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGTCGGCGCCGTGAT-GGGGGGTGTGGAGATGACCCGGGCAGCGGTCAGCGGAGGTATCATCAGCGC] [+] EMBL CA333225 [CGAGGCGTTCGGTGCCCGTTAAAGTCATTGTTGTGGGTCGAACCCGTCCTTTGACCCAGATTAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCGCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGTCGGCGCCGTGAT GGGGGGTGTGGAGATGACCCGGGCAGCG ] [+] EMBL CA590921 [ ACCCGTCCTTTGACCCAGATTAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGTC ] [+] EMBL FR0061045 [ CCGTCCTTTGACCCANATTATCCCGCAGNTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGCCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCCTTTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTTGGAGCAGCGGCCAGCACAGGGCCCAAGC ] [+] EMBL BU807237 [ GATTAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGTCGGCGCCGTGATGGGGGGGTGTGGAGATGACCCGGGCAGCGGTCAGCGGAGGTATCATCAGCGC] [+] EMBL CA591569 [ tctTAAGGCCGCAGGTGACACCAGGACAGAGTCCCGGCATCCTGTCAGGG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGG ] [+] EMBL BU805976 [ TAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGG ] [+] EMBL CA588133 [ AGCCCTTAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGCGCAT AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAA ] [+] EMBL CA590886 [ AGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGTCGGC ] [+] EMBL CA588147 [ AGCCCTTAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGCG AGTAGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAG ] [+] EMBL CA591566 [ GTCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGA ] [+] EMBL CA590129 [ CATCTCGTCAGTG AG AGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACAACATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGNGGCCAAAGATGCTGTGGTCGGCGCCGTGAT GGGGGGTGTGGAGATGACCCGGGCAGCG ] [+] EMBL FR0059224 [ TCCAGTGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCC TTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTT ] consensusID : consensus_2707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TCCCTCTGAAAGGATCATGAGACTGAACTTAAAACACAAGTGAAGAAGAGTCACCTGCTGGATTAAGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGGACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCCTTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTAT] [+] EMBL CA590875 [TCCCTCTGAAAGGATCATGAGACTGAACTTAAAACACAAGTGAAGAAGAGTCACCTGCTGGATTAAGATTGAATCCAGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGGACCCGGAGCTACGGCACCAGAACCAACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTCAGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCCTTTGCTGAAAGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGGGTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCTGAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGTGGTGTCGGACACCGTGGGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2707#0 CGAGGCGTTCGGTGCCCGTTAAAGTCATTGTTGTGGGTCGAACCCGTCCTTTGACCCAGA 60 consensus_2707#1 -------------------------------------------TCCCTCTGAAAGGATCA 17 * ** * * consensus_2707#0 TTAGCCCGCAGGTGACACCAGGACAGAGTCCCGGCATCTCGTCAGTGAGAGATTGAATCC 120 consensus_2707#1 TGAGACTGAACTTAAAACACAAGTGAAGAAGAGTCACCT-GCTGGATTAAGATTGAATCC 76 * ** * * * * * ** ** * ** ** * * *********** consensus_2707#0 AGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGAACCCGGAGCTACGGCACCAGAACC 180 consensus_2707#1 AGCGGTCATCATGGCAGACAGCAGAGGAGCGAACGGACCCGGAGCTACGGCACCAGAACC 136 *********************************** ************************ consensus_2707#0 AACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTC 240 consensus_2707#1 AACCGATGGAGACCAGCAGAATGTCGTTGCCCGTGTGAGCAACCTCCCGCTGGTCAGCTC 196 ************************************************************ consensus_2707#0 AGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCCTTTGCTGAA 300 consensus_2707#1 AGCCTGTGAGGTCGTGTCCAGGTCCTACACCAGCACCAAGGAGAGCTTGCCTTTGCTGAA 256 ************************************************************ consensus_2707#0 AGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGG 360 consensus_2707#1 AGGAGTGATGGATGCAGCCGAGAGCGGCGTCCGGACGCTGGGAGCAGCGGCCAGCACAGG 316 ************************************************************ consensus_2707#0 GTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCT 420 consensus_2707#1 GTCCAAGCCTCTGCTGGACATCATAGAACCACAGCTTGCCACGGTTAATGAGTACGCTCT 376 ************************************************************ consensus_2707#0 GAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGT 480 consensus_2707#1 GAAAGGTTTGGATAAAATGGAGGAGAAGATGCCGGTTCTTCACCAACCAGCAAACCAGGT 436 ************************************************************ consensus_2707#0 GGTGTCGGACACCGTGGGTATGGTGTACCAGTCCGTGGCGGGGGCCAAAGATGCTGTGGT 540 consensus_2707#1 GGTGTCGGACACCGTGGGTAT--------------------------------------- 457 ********************* consensus_2707#0 CGGCGCCGTGATGGGGGGTGTGGAGATGACCCGGGCAGCGGTCAGCGGAGGTATCATCAG 600 consensus_2707#1 ------------------------------------------------------------ consensus_2707#0 CGC 603 consensus_2707#1 --- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |