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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 609 fasta sequence
[CCAGGGAGGATGGCGGAGGGTGGTGGTACAACCGCTGCCACTCTTCGAACCCCAACGGCCGCTACTACATGGGCGGAGCCTATACAAGGTACATGGCCAAGCACGGCACAGATGATGGCGTGGTCTGGATGAACTGGAAGGGGAGCTGGTATTCACTGAAGACCATCAGCATGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATTGCGCAAGAGGAACTGTCAAGATAAAAGATCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGACAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAATAAAAAAAAAACATAAAAAAAAAACGACCTGAAAAAAAAATCTGGGACGCTGGCTGAAGGCCGAACGGATCGGTGTTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTCCTGAAGCTCGCAACTTCATTCATTCTTGCCTT]
[+] EMBL CA330893 [CCAGGGAGGATGGCGGAGGGTGGTGGTACAACCGCTGCCACTCTTCGAACCCCAACGGCCGCTACTACATGGGCGGAGCCTATACAAGGTACATGGCCAAGCACGGCACAGATGATGGCGTGGTCTGGATGAACTGGAAGGGGAGCTGGTATTCACTGAAGACCATCAGCATGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATTGCGCAAGAGGAACTGTCAAGATAAAAGATCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGAC ]
[+] EMBL CA330926 [ TGGTACAACCGCTGCCACTCTTCGAACCCCAACGGCCGCTACTACATGGGCGGAGCCTATACAAGGTACATGGCCAAGCACGGCACAGATGATGGCGTGGTCTGGATGAACTGGAAGGGGAGCTGGTATTCACTGAAGACCATCAGCATGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATTGCGCAATATTAACTGTCAAGATAAAAGATCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGAC ]
[+] EMBL FR0057902 [ CAAGAGGAACTGTCAAGATAAAAGTGCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGACAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAATAAAAAAAAAACATAAAAAAAAAACGACCTGAAAAAAAAATCTGGGACGCTGGCTGAAGGCCGAACGGATCGGTGTTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTCCTGAAGCTCGCAACTTCATTCATTCTTGCCTT]
consensusID : consensus_2714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 478 fasta sequence
[CTACAGCAGAGTATACGCTCAGGGTCTGCTCAGAGGAAGAAGGGTTCCCCCTACATGTGTCGGGGTACTCTGGGGAGGGGGGCGATGCCCTAGTGCTGTCCGGGTCAGATATGGCACCGTCCTTGTCACACGACGGGATGAAGTTCAGCACTTTCGACAAGGACAATGATAAGTGGGACCAGAACTGTGCAGAGGTGTACGGGGGAGGGTGGTGGTACAACAGGTGCCA-GTCAGCCAATCTCAATGGCGTTTATTATCGAGGTTCGTACAACCCAGAGAAAAACCCAGCAGTCCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAATACTCGTGCTCACTTCAA]
[+] EMBL CA330131 [CTACAGCAGAGTATACGCTCAGGGTCTGCTCAGAGGAAGAAGGGTTCCCCCTACATGTGTCGGGGTACTCTGGGGAGGGGGGCGATGCCCTAGTGCTGTCCGGGTCAGATATGGCACCGTCCTTGTCACACGACGGGATGAAGTTCAGCACTTTCGACAAGGACAATGATAAGTGGGACCAGAACTGTGCAGAGGTGTACGGGGGAGGGTGGTGGTACAACAGGTGTTATGTTAGCCAATCTCAATGGCGTTTATTATCGAGGTTCGTACAACCCAGAGAAAAACCCAGCAGTCCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCA ]
[+] EMBL CA333605 [ TCAGAGGAAGAAGGGTTCCCCCTACATGTGTCGGGGTACTCTGGGGAGGGGGGCGATGCCCTAGTGCTGTCCGGGTCAGATATGGCACCGTCCTTGTCACACGACGGGATGAAGTTCAGCACTTTCGACAAGGACAATGATAAGTGGGACCAGAACTGTGCAGAGGTGTACGGGGGAGGGTGGTGGTACAACAGGTGCCA GTCAGCCAATCTCAATGGCGTTTATTATCGAGGTTCGTACAACCCAGAGAAAAACCCAGCAGTCCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAATACTCGTGCTCA ]
[+] EMBL CA333596 [ GCAGTCCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAAT ]
[+] EMBL CA333632 [ CCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAATACTCGTGCTCACTTCAA]
[+] EMBL CA333556 [ CCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAATACTCGTGCTCA ]
[+] EMBL CA333646 [ AAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAATACTCGTGCTCA ]
consensusID : consensus_2714#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[GTCTGGATATCGCGTGCAGTGATGGCGCCGTCGTCTATGCTCCATTTGATGTGACACTCAATGGACGGGTTATTGTCTACACCGACCCCGCGAAGAAGGCCATCAACGACGGCATCAACCTGAGAGGAGAAAATCTCTGTTTCAAGCTGTTCTACGTCCGTCCTGATAAAGTCTCTGGGACGCTGAGGAAGGGCGAACGGATCGGGGTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTCCTGAAGCTCGCAGCTTCATTCATTCTTGCATTCTTTAATAAAAGCAAAAGCAAAAGTGTTAAAAAAAA]
[+] EMBL FR0057897 [GTCTGGATATCGCGTGCAGTGATGGCGCCGTCGTCTATGCTCCATTTGATGTGACACTCAATGGACGGGTTATTGTCTACACCGACCCCGCGAAGAAGGCCATCAACGACGGCATCAACCTGAGAGGAGAAAATCTCTGTTTCAAGCTGTTCTACGTCCGTCCTGATAAAGTCTCTGGGACGCTGAGGAAGGGCGAACGGATCGGGGTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTCCTGAAGCTCGCAGCTTCATTCATTCTTGCATTCTTTAATAAAAGCAAAAGCAAAAGTGTTAAAAAAAA]
consensusID : consensus_2714#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 373 fasta sequence
[TCAGATCAATCACATTTGAACAGTAGAAAATCAAACTCAAACTTGAAGCTGATGGACAGAAAAAATTAAAAAGCAGCTGATCTGATGAACATTCTCACAGCTTTCAGGCTGTAGCTGCTGTTGAATGTTGACCACACAACGCCATTGTGGACTGCTGGGTTTTTCTCTGGGTTGTACTCGTGCCGAATTCGGCACGAGGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATTGCGCAAGAGGAACTGTCAAGATAAAAGTTCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGACAGACAAAGAGAAAAGAAAAACCCCGGGGGGGGGCCCGGGACCCAA]
[+] EMBL FR0057842 [TCAGATCAATCACATTTGAACAGTAGAAAATCAAACTCAAACTTGAAGCTGATGGACAGAAAAAATTAAAAAGCAGCTGATCTGATGAACATTCTCACAGCTTTCAGGCTGTAGCTGCTGTTGAATGTTGACCACACAACGCCATTGTGGACTGCTGGGTTTTTCTCTGGGTTGTACTCGTGCCGAATTCGGCACGAGGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATTGCGCAAGAGGAACTGTCAAGATAAAAGTTCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGACAGACAAAGAGAAAAGAAAAACCCCGGGGGGGGGCCCGGGACCCAA]
[+] EMBL CA330899 [ AATCAAACTCAAACTTGAAGCTGATGGACAGAAAAAATTAAAAAGCAGCTGATCTGATGAACATTCTCACAGCTTTCAGGCTGTAGCTGCTGTTGAATGTTGACCACACAACGC ]
consensusID : consensus_2714#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[GTTACGGTGAAAACTACTGTTAACATTAAAAGGATAATTTATTTGGAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAGTTTTGGTCCCTTTAAGGGGGGGTTAAACCTGAGAGGAGAAAATCTCTGTTTCAAGCTGTTCTACGTCCGTCCTGATAAAGTCTCTGGGACGCTGAGGAAGGGCGAACGGATCGGGGTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGCGTTGCCCTGAAGCTCGCAACTTTATTCATTCTTG]
[+] EMBL FR0057923 [GTTACGGTGAAAACTACTGTTAACATTAAAAGGATAATTTATTTGGAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAGTTTTGGTCCCTTTAAGGGGGGGTTAAACCTGAGAGGAGAAAATCTCTGTTTCAAGCTGTTCTACGTCCGTCCTGATAAAGTCTCTGGGACGCTGAGGAAGGGCGAACGGATCGGGGTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGCGTTGCCCTGAAGCTCGCAACTTTATTCATTCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2714#2 ------------------------------------------------------------
consensus_2714#4 ------------------------------------------------------------
consensus_2714#0 CCAGGGAGGATGGCGGAGGGTGGTGGTACAACCGCTGCCACTCTTCGAACCCCAACGGCC 60
consensus_2714#3 ------------------------------------------------------------
consensus_2714#1 ------------------------------------------------------------
consensus_2714#2 ------------------------------------------------------------
consensus_2714#4 ------------------------------------------------------------
consensus_2714#0 GCTACTACATGGGCGGAGCCTATACAAGGTACATGGCCAAGCACGGCACAGATGATGGCG 120
consensus_2714#3 ------------------------------------------------------------
consensus_2714#1 ------------------CTACAGCAGAGTATACGCTCAGGGTCTGCTCAGAGGAAGAAG 42
consensus_2714#2 ------------------------------------------------------------
consensus_2714#4 ------------------------------------------------------------
consensus_2714#0 TGGTCTGGATGAACTGGAAGGGGAGCTGGTATTCACTGAAGACCATCAGCATGAAGATTC 180
consensus_2714#3 ------------------------------------------------------------
consensus_2714#1 GGTTCCCCCTACATGTGTCGGGGTACTCTGGGGAGGGGGGCGATGCCCTAGTGCTGTCCG 102
consensus_2714#2 ---------------------------------------GT---CTGGATATCGCGTGCA 18
consensus_2714#4 -----------------------------------------------GTTACGGTGAAAA 13
consensus_2714#0 GACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAA---GGCGATTGCGCAAGAG 237
consensus_2714#3 -------------------------------------TCAG---ATCAATCACATTTGAA 20
consensus_2714#1 GGTCAGATATGGCACCGTCCTTGTCACACGACGGGATGAAGTTCAGCACTTTCGACAAGG 162
*
consensus_2714#2 GTGATGGCGCCGTCGTCT--ATGCTCCATTTGATGTGA--------CACTCAATG-GACG 67
consensus_2714#4 CTACTGTTAACATTAAAAGGATAATTTATTTGGAAAAA--------AAAAAAAAA-AAAA 64
consensus_2714#0 GAACTGTCAAGATAAAAGATCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATA-AAAG 296
consensus_2714#3 -CAGTAGAAAATCAAACTCAAACTTGAAGCTGATGGACAGA---AAAAATTAAAA-AGCA 75
consensus_2714#1 ACAATGATAAGTGGGACCAGAACTGTGCAGAGGTGTACGGGGGAGGGTGGTGGTACAACA 222
* *
consensus_2714#2 GGTTATTGTCTACACCG-ACCCCGCGAAGAAGGCCATCAACGACGGCATCAACCTGAGAG 126
consensus_2714#4 CCTCGGGGGGGGCCCCGGACCCCAGTTTTGGTCCCTTTAAGGGGGGGTTAAACCTGAGAG 124
consensus_2714#0 CATGACAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAA 356
consensus_2714#3 GCTGATCTGATGAACATTCTCACAGCTTTCAGGCTGT-AGCTGCTGTTGAATGTTGACCA 134
consensus_2714#1 GGTGCCAGTCAGCCAATCTCAATGGCGTTTA--TTATCGAGGTTCGTACAACCCAGAGAA 280
* * *
consensus_2714#2 GAGAAAATCTCTGTTTCAAGCTGT-TCTACGTC--CGTCCTGATAAAGTC---TCTGGGA 180
consensus_2714#4 GAGAAAATCTCTGTTTCAAGCTGT-TCTACGTC--CGTCCTGATAAAGTC---TCTGGGA 178
consensus_2714#0 AAAAAAAAAATAAAAAAAAAACAT-AAAAAAAAAACGACCTGAAAAAAAAA--TCTGGGA 413
consensus_2714#3 CACAACGCCATTGTGGACTGCTGGGTTTTTCTCTGGGTTGTACTCGTGCCGAATTCGGCA 194
consensus_2714#1 AAACCCAGCAGTCCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAA 340
* * *
consensus_2714#2 CGCTGAG-----GAAGGGCGAACGGATCGGG---GT-CCTGCTGCCCATGCAGACCGTCT 231
consensus_2714#4 CGCTGAG-----GAAGGGCGAACGGATCGGG---GT-CCTGCTGCCCATGCAGACCGTCT 229
consensus_2714#0 CGCTGGCT----GAAGGCCGAACGGATCGGT---GTTCCTGCTGCCCATGCAGACCGTCT 466
consensus_2714#3 CGAGGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATT 254
consensus_2714#1 AGCTGTGA----GAATGTTCATCAGATCAGC---TGCTTTTTAATTTTTTCTGTCCATCA 393
* * ** * *** * *
consensus_2714#2 ACC-CTGGAATAACTTCACACGTGCA-TGTGCAGATGTG--TGAC--AAA---TCTGACC 282
consensus_2714#4 ACC-CTGGAATAACTTCACACGTGCA-TGTGCAGATGTG--TGAC--AAA---TCTGACC 280
consensus_2714#0 ACC-CTGGAATAACTTCACACGTGCA-TGTGCAGATGTG--TGAC--AAA---TCTGACC 517
consensus_2714#3 GCG-CAAGAGGAACTGTCAAGATAAA-AGTTCGAGTGCAGCTGAT--AAGAGCTCTCCCT 310
consensus_2714#1 GCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAAT 453
* * * * * * * ** * ** *** * **
consensus_2714#2 CCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTC 342
consensus_2714#4 CCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGCGTTGCC 340
consensus_2714#0 CCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTC 577
consensus_2714#3 TCACAATAAAAGCATGAC-AGACAAAGAGAAAAGAAAAAC-------CCCGGGGGGGGGC 362
consensus_2714#1 CAATAA-ATACTCGTGCTCACTTCAA---------------------------------- 478
* * * * ** * **
consensus_2714#2 CTGAAGCTCGCAGCTTCATTCATTCTTGCATTCTTTAATAAAAGCAAAAGCAAAAGTGTT 402
consensus_2714#4 CTGAAGCTCGCAACTTTATTCATTCTTG-------------------------------- 368
consensus_2714#0 CTGAAGCTCGCAACTTCATTCATTCTTGCCTT---------------------------- 609
consensus_2714#3 CCGGGACCCAA------------------------------------------------- 373
consensus_2714#1 ------------------------------------------------------------
consensus_2714#2 AAAAAAAA 410
consensus_2714#4 --------
consensus_2714#0 --------
consensus_2714#3 --------
consensus_2714#1 --------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |